Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8320621.1

Orthogroup ID

OG0000850

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 929

Gene Structure 928 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8320621.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 841 bp

ctgctaattcatactttgaaatacagggcattgcatgaaaaggaaaagagaccaaaaggaggccgtacaaggctacaattcttcttcttggttttcgtatgcagctttgcttactacattgttccggcttatctattcccctccatatctgctttctccattgtttgtttgatatggaagaactccattactgcccaacagattggttccggggcccatggacttggcattggctcatttggacttgattggtctactgttgcaggtttcttaggcagtccattggctacacccggatttgccaccattaacatcttacttggttttgtgctgattgtctacattgttacccccattgcttattggaacaatgcatatggtgctcataagttcccaattatttcctctcatacttttgatgcgatgggcaacacctacaacattaccaggattctaaatcagaaaaacttcaacatcgatatgtctgaatataacagctacagcaaactccatctcagtaccttctttgccttcacttatggactgagcttcgcaactctcactgctacaatttcacatgttgcacttttccatggaaaaacaatctggcacatgtggagaatgacagctagtgctgtgaaagatcaagttggtgacatccacacaaggctgatgaagaagaattatgatgcagtccctcaatggtggtttcatttcatccttgtctcaatggtgggtcttgccatctttgcttgtgaaggttttggcaaacagctccaacttccatggtggggagttttaatggcttgtggcattgcactgttcttcaccttacccattg

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006857 GO:0008150 GO:0015833 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0035672 GO:0035673 GO:0042886 GO:0042887 GO:0044425 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OPT

Protein Analysis

280

Amino Acids

31.52

Weight (kDa)

9.5

Isoelectric Point (pI)

31.63

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000850)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26590 AT5G55930
fragaria_vesca	FvH4_3g42570 FvH4_3g42651 FvH4_3g42660 FvH4_3g42660 FvH4_3g42660 FvH4_3g42660
malus_domestica	MD03G1029800.v1.1 MD03G1029900.v1.1 MD03G1030000.v1.1 MD07G1217200.v1.1 MD11G1034800.v1.1 MD11G1035000.v1.1 MD11G1035100.v1.1
prunus_persica	Prupe.6G026000_v2.0.a1 Prupe.6G026100_v2.0.a1 Prupe.6G026200_v2.0.a1 Prupe.6G026200_v2.0.a1 Prupe.6G026300_v2.0.a1
pyrus_communis	pycom03g02480 pycom03g02500 pycom11g02890 pycom11g02900
rosa_chinensis	RchiOBHm_Chr5g0076291 RchiOBHm_Chr5g0076301 RchiOBHm_Chr5g0076311 RchiOBHm_Chr5g0076621 RchiOBHm_Chr5g0076671
rosa_laevigata	RLG00000036614 RLG00000036615 RLG00000036616 RLG00000036617
rosa_multiflora	Rmu_co8320621.1_g000001 Rmu_co8419599.1_g000001 Rmu_co8455339.1_g000001 Rmu_sc0005961.1_g000002 Rmu_sc0005961.1_g000003 Rmu_sc0013948.1_g000002 Rmu_sc0035770.1_g000001 Rmu_sc0040547.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005490 Rroxscaffold_1G00005550 Rroxscaffold_1G00005560 Rroxscaffold_1G00005570
rosa_rugosa	Rorug05G0446700.1 Rorug05G0447000 Rorug05G0447100 Rorug05G0447200 Rorug05G0447200 Rorug05G0447300
rosa_samantha	Rh5AG501900 Rh5AG502000 Rh5AG502100 Rh5BG523700 Rh5BG523800 Rh5BG523900 Rh5CG547400 Rh5CG547500 Rh5CG547600 Rh5DG535900 Rh5DG536000 Rh5DG536100 Rh7AG436800
rosa_wichuraiana	Rw0G015040 Rw0G015060 Rw5G046590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	254
AccI	GTMKAC	2 cut(s)	254, 339
AfaI	GTAC	2 cut(s)	67, 520
AfiI	CCNNNNNNNGG	2 cut(s)	59, 791
AflIII	ACRYGT	2 cut(s)	577, 612
AgsI	TTSAA	2 cut(s)	19, 472
AjnI	CCWGG	1 cut(s)	446
AluBI	AGCT	5 cut(s)	105, 498, 549, 629, 775
AluI	AGCT	5 cut(s)	105, 498, 549, 629, 775
Alw21I	GWGCWC	1 cut(s)	385
Alw26I	GTCTC	2 cut(s)	43, 730
AoxI	GGCC	2 cut(s)	61, 213
ApaI	GGGCCC	1 cut(s)	217
ApeKI	GCWGC	1 cut(s)	102
Asp700I	GAANNNNTTC	1 cut(s)	467
AspS9I	GGNCC	2 cut(s)	213, 214
AsuC2I	CCSGG	2 cut(s)	211, 294
AsuHPI	GGTGA	2 cut(s)	665, 820
BaeGI	GKGCMC	1 cut(s)	217
BanII	GRGCYC	1 cut(s)	217
Bbv12I	GWGCWC	1 cut(s)	385
BbvI	GCAGC	1 cut(s)	114
BccI	CCATC	3 cut(s)	418, 519, 752
BceAI	ACGGC	1 cut(s)	48
BciT130I	CCWGG	1 cut(s)	448
BcnI	CCSGG	2 cut(s)	211, 294
BcoDI	GTCTC	2 cut(s)	43, 730
BfaI	CTAG	1 cut(s)	630
BfmI	CTRYAG	1 cut(s)	499
BfuAI	ACCTGC	1 cut(s)	254
BisI	GCNGC	1 cut(s)	103
BlsI	GCNGC	1 cut(s)	104
Bme1390I	CCNGG	3 cut(s)	211, 294, 448
BmgT120I	GGNCC	2 cut(s)	213, 214
BmiI	GGNNCC	3 cut(s)	208, 214, 215
BmrFI	CCNGG	3 cut(s)	211, 294, 448
BmsI	GCATC	2 cut(s)	409, 679
BpuMI	CCSGG	2 cut(s)	211, 294
Bsa29I	ATCGAT	1 cut(s)	477
BsaI	GGTCTC	1 cut(s)	43
BsaJI	CCNNGG	4 cut(s)	210, 217, 592, 785
Bsc4I	CCNNNNNNNGG	2 cut(s)	59, 791
Bse3DI	GCAATG	3 cut(s)	29, 354, 813
BseBI	CCWGG	1 cut(s)	448
BseCI	ATCGAT	1 cut(s)	477
BseDI	CCNNGG	4 cut(s)	210, 217, 592, 785
BseGI	GGATG	2 cut(s)	657, 717
BseLI	CCNNNNNNNGG	2 cut(s)	59, 791
BseMI	GCAATG	3 cut(s)	29, 354, 813
BseMII	CTCAG	2 cut(s)	529, 536
BseSI	GKGCMC	1 cut(s)	217
BseXI	GCAGC	1 cut(s)	114
BshFI	GGCC	2 cut(s)	63, 215
BshVI	ATCGAT	1 cut(s)	477
BsiHKAI	GWGCWC	1 cut(s)	385
BsiSI	CCGG	3 cut(s)	125, 210, 294
BslFI	GGGAC	1 cut(s)	680
BslI	CCNNNNNNNGG	2 cut(s)	59, 791
BsmAI	GTCTC	2 cut(s)	43, 730
BsmFI	GGGAC	1 cut(s)	680
BsnI	GGCC	2 cut(s)	63, 215
Bso31I	GGTCTC	1 cut(s)	43
Bsp120I	GGGCCC	1 cut(s)	213
Bsp1286I	GDGCHC	2 cut(s)	217, 385
Bsp143I	GATC	1 cut(s)	643
Bsp19I	CCATGG	3 cut(s)	217, 592, 785
BspANI	GGCC	2 cut(s)	63, 215
BspCNI	CTCAG	2 cut(s)	528, 537
BspDI	ATCGAT	1 cut(s)	477
BspLI	GGNNCC	3 cut(s)	208, 214, 215
BspMI	ACCTGC	1 cut(s)	254
BspTNI	GGTCTC	1 cut(s)	43
BsrDI	GCAATG	3 cut(s)	29, 354, 813
BssECI	CCNNGG	4 cut(s)	210, 217, 592, 785
BssMI	GATC	1 cut(s)	643
BssT1I	CCWWGG	3 cut(s)	217, 592, 785
Bst2UI	CCWGG	1 cut(s)	448
Bst4CI	ACNGT	2 cut(s)	259, 822
BstAPI	GCANNNNNTGC	1 cut(s)	380
BstDEI	CTNAG	3 cut(s)	271, 515, 545
BstDSI	CCRYGG	3 cut(s)	217, 592, 785
BstF5I	GGATG	2 cut(s)	657, 717
BstKTI	GATC	1 cut(s)	646
BstMAI	GTCTC	2 cut(s)	43, 730
BstMBI	GATC	1 cut(s)	643
BstMWI	GCNNNNNNNGC	2 cut(s)	380, 749
BstNI	CCWGG	1 cut(s)	448
BstNSI	RCATGY	2 cut(s)	581, 616
BstSCI	CCNGG	3 cut(s)	209, 292, 446
BstSFI	CTRYAG	1 cut(s)	499
BstSLI	GKGCMC	1 cut(s)	217
BstV1I	GCAGC	1 cut(s)	114
BstXI	CCANNNNNNTGG	2 cut(s)	203, 224
Bsu15I	ATCGAT	1 cut(s)	477
BsuRI	GGCC	2 cut(s)	63, 215
BsuTUI	ATCGAT	1 cut(s)	477
BtgI	CCRYGG	3 cut(s)	217, 592, 785
BtgZI	GCGATG	1 cut(s)	437
BtsCI	GGATG	2 cut(s)	657, 717
BtsI	GCAGTG	1 cut(s)	561
BtsIMutI	CAGTG	2 cut(s)	561, 818
BveI	ACCTGC	1 cut(s)	254
Cfr13I	GGNCC	2 cut(s)	213, 214
ClaI	ATCGAT	1 cut(s)	477
Csp6I	GTAC	2 cut(s)	66, 519
CviAII	CATG	6 cut(s)	35, 218, 578, 593, 613, 786
CviQI	GTAC	2 cut(s)	66, 519
DdeI	CTNAG	3 cut(s)	271, 515, 545
DpnI	GATC	1 cut(s)	645
DpnII	GATC	1 cut(s)	643
Eco130I	CCWWGG	3 cut(s)	217, 592, 785
Eco24I	GRGCYC	1 cut(s)	217
Eco31I	GGTCTC	1 cut(s)	43
EcoO109I	RGGNCCY	1 cut(s)	213
EcoRII	CCWGG	1 cut(s)	446
EcoT14I	CCWWGG	3 cut(s)	217, 592, 785
EcoT22I	ATGCAT	1 cut(s)	376
EcoT38I	GRGCYC	1 cut(s)	217
ErhI	CCWWGG	3 cut(s)	217, 592, 785
FaeI	CATG	6 cut(s)	38, 221, 581, 596, 616, 789
FaqI	GGGAC	1 cut(s)	680
FatI	CATG	6 cut(s)	34, 217, 577, 592, 612, 785
FauNDI	CATATG	1 cut(s)	376
FblI	GTMKAC	2 cut(s)	254, 339
Fnu4HI	GCNGC	1 cut(s)	103
FokI	GGATG	2 cut(s)	644, 704
FriOI	GRGCYC	1 cut(s)	217
Fsp4HI	GCNGC	1 cut(s)	103
FspBI	CTAG	1 cut(s)	630
GluI	GCNGC	1 cut(s)	103
HaeIII	GGCC	2 cut(s)	63, 215
HapII	CCGG	3 cut(s)	125, 210, 294
Hin1II	CATG	6 cut(s)	38, 221, 581, 596, 616, 789
HinfI	GANTC	1 cut(s)	451
HpaII	CCGG	3 cut(s)	125, 210, 294
HphI	GGTGA	2 cut(s)	665, 820
Hpy166II	GTNNAC	2 cut(s)	255, 340
Hpy188I	TCNGA	2 cut(s)	462, 487
Hpy8I	GTNNAC	2 cut(s)	255, 340
HpyAV	CCTTC	3 cut(s)	532, 541, 752
HpyCH4III	ACNGT	2 cut(s)	259, 822
HpyCH4V	TGCA	7 cut(s)	34, 102, 263, 374, 584, 692, 818
HpyF10VI	GCNNNNNNNGC	2 cut(s)	380, 749
HpyF3I	CTNAG	3 cut(s)	271, 515, 545
Hsp92II	CATG	6 cut(s)	38, 221, 581, 596, 616, 789
Kzo9I	GATC	1 cut(s)	643
LmnI	GCTCC	1 cut(s)	780
LpnPI	CCDG	8 cut(s)	10, 138, 223, 249, 307, 433, 460, 592
Lsp1109I	GCAGC	1 cut(s)	114
LweI	GCATC	2 cut(s)	409, 679
MaeI	CTAG	1 cut(s)	630
MaeIII	GTNAC	2 cut(s)	346, 653
MalI	GATC	1 cut(s)	645
MboI	GATC	1 cut(s)	643
MboII	GAAGA	6 cut(s)	73, 76, 190, 688, 691, 817
MhlI	GDGCHC	2 cut(s)	217, 385
MluCI	AATT	5 cut(s)	6, 77, 396, 570, 682
MmeI	TCCRAC	1 cut(s)	802
MnlI	CCTC	4 cut(s)	53, 151, 415, 708
Mph1103I	ATGCAT	1 cut(s)	376
MroXI	GAANNNNTTC	1 cut(s)	467
MseI	TTAA	2 cut(s)	309, 800
MslI	CAYNNNNRTG	1 cut(s)	479
MspI	CCGG	3 cut(s)	125, 210, 294
MspR9I	CCNGG	3 cut(s)	211, 294, 448
MvaI	CCWGG	1 cut(s)	448
MwoI	GCNNNNNNNGC	2 cut(s)	380, 749
NciI	CCSGG	2 cut(s)	211, 294
NcoI	CCATGG	3 cut(s)	217, 592, 785
NdeI	CATATG	1 cut(s)	376
NdeII	GATC	1 cut(s)	643
NlaIII	CATG	6 cut(s)	38, 221, 581, 596, 616, 789
NlaIV	GGNNCC	3 cut(s)	208, 214, 215
NmuCI	GTSAC	1 cut(s)	653
NsiI	ATGCAT	1 cut(s)	376
NspI	RCATGY	2 cut(s)	581, 616
PciI	ACATGT	2 cut(s)	577, 612
PdmI	GAANNNNTTC	1 cut(s)	467
PfeI	GAWTC	1 cut(s)	451
PkrI	GCNGC	1 cut(s)	104
PscI	ACATGT	2 cut(s)	577, 612
Psp6I	CCWGG	1 cut(s)	446
PspGI	CCWGG	1 cut(s)	446
PspN4I	GGNNCC	3 cut(s)	208, 214, 215
PspOMI	GGGCCC	1 cut(s)	213
PspPI	GGNCC	2 cut(s)	213, 214
RsaI	GTAC	2 cut(s)	67, 520
RsaNI	GTAC	2 cut(s)	66, 519
RseI	CAYNNNNRTG	1 cut(s)	479
SaqAI	TTAA	2 cut(s)	309, 800
SatI	GCNGC	1 cut(s)	103
Sau3AI	GATC	1 cut(s)	643
Sau96I	GGNCC	2 cut(s)	213, 214
ScrFI	CCNGG	3 cut(s)	211, 294, 448
SduI	GDGCHC	2 cut(s)	217, 385
SfaNI	GCATC	2 cut(s)	409, 679
SfcI	CTRYAG	1 cut(s)	499
SmiMI	CAYNNNNRTG	1 cut(s)	479
Sse9I	AATT	5 cut(s)	6, 77, 396, 570, 682
SspMI	CTAG	1 cut(s)	630
StyD4I	CCNGG	3 cut(s)	209, 292, 446
StyI	CCWWGG	3 cut(s)	217, 592, 785
TaaI	ACNGT	2 cut(s)	259, 822
TaqI	TCGA	1 cut(s)	477
TasI	AATT	5 cut(s)	6, 77, 396, 570, 682
TfiI	GAWTC	1 cut(s)	451
Tru1I	TTAA	2 cut(s)	309, 800
Tru9I	TTAA	2 cut(s)	309, 800
TscAI	CASTG	2 cut(s)	568, 825
TseFI	GTSAC	1 cut(s)	653
TseI	GCWGC	1 cut(s)	102
Tsp45I	GTSAC	1 cut(s)	653
TspDTI	ATGAA	4 cut(s)	51, 689, 701, 706
TspRI	CASTG	2 cut(s)	568, 825
XceI	RCATGY	2 cut(s)	581, 616
XmiI	GTMKAC	2 cut(s)	254, 339
XmnI	GAANNNNTTC	1 cut(s)	467
XspI	CTAG	1 cut(s)	630
Zsp2I	ATGCAT	1 cut(s)	376

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.