Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7A

Orthogroup ID

OG0000850

Physical Location & Seq

Genomic Coordinates Forward (+)

58810245 .. 58810526

Gene Structure 282 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7AG436800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 282 bp

ATGCCACCGGCTACATCAGTAAACTTCAATTGCTGGATTGTTATTGGAACTATTTTCGGCTACTACATCTTTAGATATAGAACGGCATGGTGGCAGAGGTACAATTATGTTCTTTCGGCTGCCTTAGACGCTGGATTGGCTTGCATGGCGGTGCTCTTATACTTCACATTAACCATGAACGGGAAGAGCATATCTTGGTGGGGTGCGGATGGTGAACACTGTGAATTGGCTTCATGTCCCACAGCCAAAGGAATCGTTGTTGATGGTTGTCCTGTCTTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006857 GO:0008150 GO:0015833 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0035672 GO:0035673 GO:0042886 GO:0042887 GO:0044425 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OPT

Protein Analysis

93

Amino Acids

10.39

Weight (kDa)

6.5

Isoelectric Point (pI)

22.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OPT	PF03169	1 - 56	7.1e-11	OPT oligopeptide transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0000850)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26590 AT5G55930
fragaria_vesca	FvH4_3g42570 FvH4_3g42651 FvH4_3g42660 FvH4_3g42660 FvH4_3g42660 FvH4_3g42660
malus_domestica	MD03G1029800.v1.1 MD03G1029900.v1.1 MD03G1030000.v1.1 MD07G1217200.v1.1 MD11G1034800.v1.1 MD11G1035000.v1.1 MD11G1035100.v1.1
prunus_persica	Prupe.6G026000_v2.0.a1 Prupe.6G026100_v2.0.a1 Prupe.6G026200_v2.0.a1 Prupe.6G026200_v2.0.a1 Prupe.6G026300_v2.0.a1
pyrus_communis	pycom03g02480 pycom03g02500 pycom11g02890 pycom11g02900
rosa_chinensis	RchiOBHm_Chr5g0076291 RchiOBHm_Chr5g0076301 RchiOBHm_Chr5g0076311 RchiOBHm_Chr5g0076621 RchiOBHm_Chr5g0076671
rosa_laevigata	RLG00000036614 RLG00000036615 RLG00000036616 RLG00000036617
rosa_multiflora	Rmu_co8320621.1_g000001 Rmu_co8419599.1_g000001 Rmu_co8455339.1_g000001 Rmu_sc0005961.1_g000002 Rmu_sc0005961.1_g000003 Rmu_sc0013948.1_g000002 Rmu_sc0035770.1_g000001 Rmu_sc0040547.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005490 Rroxscaffold_1G00005550 Rroxscaffold_1G00005560 Rroxscaffold_1G00005570
rosa_rugosa	Rorug05G0446700.1 Rorug05G0447000 Rorug05G0447100 Rorug05G0447200 Rorug05G0447200 Rorug05G0447300
rosa_samantha	Rh5AG501900 Rh5AG502000 Rh5AG502100 Rh5BG523700 Rh5BG523800 Rh5BG523900 Rh5CG547400 Rh5CG547500 Rh5CG547600 Rh5DG535900 Rh5DG536000 Rh5DG536100 Rh7AG436800
rosa_wichuraiana	Rw0G015040 Rw0G015060 Rw5G046590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	149, 206
AfaI	GTAC	1 cut(s)	101
AfiI	CCNNNNNNNGG	1 cut(s)	180
AgsI	TTSAA	1 cut(s)	28
Alw21I	GWGCWC	1 cut(s)	156
ApeKI	GCWGC	1 cut(s)	119
AsuHPI	GGTGA	1 cut(s)	224
BbsI	GAAGAC	1 cut(s)	268
Bbv12I	GWGCWC	1 cut(s)	156
BbvI	GCAGC	1 cut(s)	106
BccI	CCATC	2 cut(s)	203, 257
BceAI	ACGGC	1 cut(s)	99
BisI	GCNGC	1 cut(s)	120
BlsI	GCNGC	1 cut(s)	121
BpiI	GAAGAC	1 cut(s)	268
Bsc4I	CCNNNNNNNGG	1 cut(s)	180
Bse118I	RCCGGY	1 cut(s)	7
BseGI	GGATG	1 cut(s)	214
BseLI	CCNNNNNNNGG	1 cut(s)	180
BseXI	GCAGC	1 cut(s)	106
BsiHKAI	GWGCWC	1 cut(s)	156
BsiSI	CCGG	1 cut(s)	8
BslFI	GGGAC	1 cut(s)	222
BslI	CCNNNNNNNGG	1 cut(s)	180
BsmFI	GGGAC	1 cut(s)	222
Bsp1286I	GDGCHC	1 cut(s)	156
BspACI	CCGC	2 cut(s)	149, 206
BspQI	GCTCTTC	1 cut(s)	179
BsrFI	RCCGGY	1 cut(s)	7
BssAI	RCCGGY	1 cut(s)	7
Bst4CI	ACNGT	1 cut(s)	221
Bst6I	CTCTTC	1 cut(s)	179
BstC8I	GCNNGC	1 cut(s)	142
BstDEI	CTNAG	1 cut(s)	124
BstF5I	GGATG	1 cut(s)	214
BstMWI	GCNNNNNNNGC	3 cut(s)	128, 137, 146
BstV1I	GCAGC	1 cut(s)	106
BstV2I	GAAGAC	1 cut(s)	268
BtsCI	GGATG	1 cut(s)	214
BtsIMutI	CAGTG	1 cut(s)	217
Cac8I	GCNNGC	1 cut(s)	142
Cfr10I	RCCGGY	1 cut(s)	7
CseI	GACGC	1 cut(s)	137
Csp6I	GTAC	1 cut(s)	100
CviAII	CATG	4 cut(s)	87, 145, 175, 234
CviJI	RGCY	6 cut(s)	11, 60, 119, 140, 230, 245
CviKI_1	RGCY	6 cut(s)	11, 60, 119, 140, 230, 245
CviQI	GTAC	1 cut(s)	100
DdeI	CTNAG	1 cut(s)	124
Eam1104I	CTCTTC	1 cut(s)	179
EarI	CTCTTC	1 cut(s)	179
FaeI	CATG	4 cut(s)	90, 148, 178, 237
FaiI	YATR	8 cut(s)	78, 88, 108, 146, 160, 176, 191, 235
FaqI	GGGAC	1 cut(s)	222
FatI	CATG	4 cut(s)	86, 144, 174, 233
Fnu4HI	GCNGC	1 cut(s)	120
FokI	GGATG	1 cut(s)	221
Fsp4HI	GCNGC	1 cut(s)	120
GluI	GCNGC	1 cut(s)	120
HapII	CCGG	1 cut(s)	8
HgaI	GACGC	1 cut(s)	137
Hin1II	CATG	4 cut(s)	90, 148, 178, 237
HinfI	GANTC	1 cut(s)	252
HpaII	CCGG	1 cut(s)	8
HphI	GGTGA	1 cut(s)	224
Hpy166II	GTNNAC	2 cut(s)	22, 215
Hpy8I	GTNNAC	2 cut(s)	22, 215
HpyCH4III	ACNGT	1 cut(s)	221
HpyCH4V	TGCA	1 cut(s)	144
HpyF10VI	GCNNNNNNNGC	3 cut(s)	128, 137, 146
HpyF3I	CTNAG	1 cut(s)	124
Hsp92II	CATG	4 cut(s)	90, 148, 178, 237
LguI	GCTCTTC	1 cut(s)	179
LpnPI	CCDG	3 cut(s)	19, 21, 117
Lsp1109I	GCAGC	1 cut(s)	106
MboII	GAAGA	2 cut(s)	196, 268
MfeI	CAATTG	1 cut(s)	28
MhlI	GDGCHC	1 cut(s)	156
MluCI	AATT	3 cut(s)	28, 103, 224
MnlI	CCTC	1 cut(s)	90
MseI	TTAA	1 cut(s)	170
MslI	CAYNNNNRTG	1 cut(s)	149
MspI	CCGG	1 cut(s)	8
MunI	CAATTG	1 cut(s)	28
MwoI	GCNNNNNNNGC	3 cut(s)	128, 137, 146
NlaIII	CATG	4 cut(s)	90, 148, 178, 237
PciSI	GCTCTTC	1 cut(s)	179
PfeI	GAWTC	1 cut(s)	252
PkrI	GCNGC	1 cut(s)	121
RsaI	GTAC	1 cut(s)	101
RsaNI	GTAC	1 cut(s)	100
RseI	CAYNNNNRTG	1 cut(s)	149
SapI	GCTCTTC	1 cut(s)	179
SaqAI	TTAA	1 cut(s)	170
SatI	GCNGC	1 cut(s)	120
SduI	GDGCHC	1 cut(s)	156
SetI	ASST	1 cut(s)	101
SmiMI	CAYNNNNRTG	1 cut(s)	149
Sse9I	AATT	3 cut(s)	28, 103, 224
SsiI	CCGC	2 cut(s)	149, 206
TaaI	ACNGT	1 cut(s)	221
TasI	AATT	3 cut(s)	28, 103, 224
TfiI	GAWTC	1 cut(s)	252
Tru1I	TTAA	1 cut(s)	170
Tru9I	TTAA	1 cut(s)	170
TscAI	CASTG	1 cut(s)	224
TseI	GCWGC	1 cut(s)	119
TspDTI	ATGAA	2 cut(s)	191, 222
TspRI	CASTG	1 cut(s)	224

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.