Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000005

Orthogroup ID

OG0000850

Physical Location & Seq

Genomic Coordinates Reverse (-)

61953295 .. 61956990

Gene Structure 3696 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug05G0447200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

ATGAGAAGTTTATCTAAATCAGGTCTCGGCTCAGAGTGGTATCACAGTCATAATTTCAAAAAAGAATTAGCTAAGAAAACGAAGAAAACTTCTTCAATTATTTTCTTCTTAAAGAAACCGATGCAAAGAGTGATCAGACAAAACGCTGACCTCGCTGCGTTTCGCTCATTCGAACTGAATTCCTACTTGAAACGACTTCGTAGAAAGAAGAGGGTAAAAGAAATGGCACCCTTCAAAGCTCTGGAGCTAGAGTACCCAATAATCGACTCCAATTTCCAGACTTTTTGCGCCTCACATGGCATTCTCTCAGTGGAAGATTTCCTCATTCACGACCTGTATGAGTTGGCTGCGTTTGCAAAACAACAGCCCACCTCGGAAAAACTAGAGCAGGGCATTACCCAGATCCTCTCTATTATTGATGCTCAGCACCAACCATGGGTGAATGGTATGCAACTTTTAGATGATGCTCTACATAGGAAACACGTAATTCCAACTGGCTGTGAAGGGGTTGATTTGTTACTGGGAGGTGGATTACTTGAGGGACAATTAACTGAACTTGTTGGGCCGTCATCTTCTGGTAAAACGCAAGTCTGCCTGCTTGCTGCCTCATATCTTGCATCAAAGCACATGGGTACTGTTGTATATCTAGACACAGGAAACTCTTTCTCCACCCAACGAATTGCAGAGTTTGTTGGTCGATTCTCTAACCACATGTTTAGTCAGGTTATACCATTACTTTTGGGCCAAAGGAATTTTCAGAAAGTAATGAACAACATCTTGTGCCATTCCGTGTTTGACATCTTTACAATGTTCAATGTGTTACATCAGCTGGAGTTCAATTTGAAATCTCAGCTGCAGAAAGGAGGGCAGGTGCGGTTGCTTATTGTTGATTCGATCTCTTCACTAATTACCCCAATTCTTGGGAATATAGGTTCACAGGGACGTGCTTTGATGACATCTGCTGGATATTTGTTAAAGAAATTAGCACATGAGCATAATATTGTGGTACTGGTGACCAATCACACAGTAGGTGGAGAGAGAGGTATTCCAAAACCAGCTCTTGGCCAGATCTGGAAGACCGTCGCACATGTGAGGCTTCTGCTTTCCGCTGACCATGGAAATGATACCCGGAGTATTTCTGTGCTAAAACACCCATCTATGGCTTCTGGCAAGGTTGCAAGGTTTAGAGTGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006857 GO:0008150 GO:0015833 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0035672 GO:0035673 GO:0042886 GO:0042887 GO:0044425 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OPT

Protein Analysis

397

Amino Acids

44.29

Weight (kDa)

9.75

Isoelectric Point (pI)

24.67

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RecA_N	PF00154	150 - 225	1.9e-06	RecA N-terminal domain
Rad51	PF08423	163 - 389	2.9e-16	Rad51

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000850)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26590 AT5G55930
fragaria_vesca	FvH4_3g42570 FvH4_3g42651 FvH4_3g42660 FvH4_3g42660 FvH4_3g42660 FvH4_3g42660
malus_domestica	MD03G1029800.v1.1 MD03G1029900.v1.1 MD03G1030000.v1.1 MD07G1217200.v1.1 MD11G1034800.v1.1 MD11G1035000.v1.1 MD11G1035100.v1.1
prunus_persica	Prupe.6G026000_v2.0.a1 Prupe.6G026100_v2.0.a1 Prupe.6G026200_v2.0.a1 Prupe.6G026200_v2.0.a1 Prupe.6G026300_v2.0.a1
pyrus_communis	pycom03g02480 pycom03g02500 pycom11g02890 pycom11g02900
rosa_chinensis	RchiOBHm_Chr5g0076291 RchiOBHm_Chr5g0076301 RchiOBHm_Chr5g0076311 RchiOBHm_Chr5g0076621 RchiOBHm_Chr5g0076671
rosa_laevigata	RLG00000036614 RLG00000036615 RLG00000036616 RLG00000036617
rosa_multiflora	Rmu_co8320621.1_g000001 Rmu_co8419599.1_g000001 Rmu_co8455339.1_g000001 Rmu_sc0005961.1_g000002 Rmu_sc0005961.1_g000003 Rmu_sc0013948.1_g000002 Rmu_sc0035770.1_g000001 Rmu_sc0040547.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005490 Rroxscaffold_1G00005550 Rroxscaffold_1G00005560 Rroxscaffold_1G00005570
rosa_rugosa	Rorug05G0446700.1 Rorug05G0447000 Rorug05G0447100 Rorug05G0447200 Rorug05G0447200 Rorug05G0447300
rosa_samantha	Rh5AG501900 Rh5AG502000 Rh5AG502100 Rh5BG523700 Rh5BG523800 Rh5BG523900 Rh5CG547400 Rh5CG547500 Rh5CG547600 Rh5DG535900 Rh5DG536000 Rh5DG536100 Rh7AG436800
rosa_wichuraiana	Rw0G015040 Rw0G015060 Rw5G046590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	859
Acc36I	ACCTGC	1 cut(s)	859
AccB1I	GGYRCC	1 cut(s)	226
AccB7I	CCANNNNNTGG	2 cut(s)	920, 1061
AciI	CCGC	2 cut(s)	874, 1107
AclWI	GGATC	1 cut(s)	397
AcoI	YGGCCR	1 cut(s)	1063
AcsI	RAATTY	2 cut(s)	178, 751
AfaI	GTAC	3 cut(s)	254, 634, 1008
AfiI	CCNNNNNNNGG	4 cut(s)	436, 920, 1061, 1159
AflIII	ACRYGT	3 cut(s)	481, 711, 1087
AgsI	TTSAA	7 cut(s)	58, 96, 190, 235, 814, 838, 844
AjiI	CACGTC	1 cut(s)	944
AjuI	GAANNNNNNNTTGG	2 cut(s)	738, 770
AloI	GAACNNNNNNTCC	2 cut(s)	916, 948
AluBI	AGCT	6 cut(s)	71, 239, 247, 829, 853, 1058
AluI	AGCT	6 cut(s)	71, 239, 247, 829, 853, 1058
Alw26I	GTCTC	1 cut(s)	29
AlwI	GGATC	1 cut(s)	397
AoxI	GGCC	3 cut(s)	563, 742, 1063
ApeKI	GCWGC	4 cut(s)	155, 347, 602, 853
ApoI	RAATTY	2 cut(s)	178, 751
AspLEI	GCGC	1 cut(s)	290
AspS9I	GGNCC	2 cut(s)	563, 742
AsuC2I	CCSGG	1 cut(s)	1129
AsuHPI	GGTGA	2 cut(s)	451, 1024
AsuII	TTCGAA	1 cut(s)	171
BaeI	ACNNNNGTAYC	2 cut(s)	624, 657
BalI	TGGCCA	1 cut(s)	1065
BanI	GGYRCC	1 cut(s)	226
BbsI	GAAGAC	1 cut(s)	1082
BbvI	GCAGC	4 cut(s)	142, 334, 589, 840
BccI	CCATC	1 cut(s)	1162
BceAI	ACGGC	1 cut(s)	550
BclI	TGATCA	1 cut(s)	132
BcnI	CCSGG	1 cut(s)	1129
BcoDI	GTCTC	1 cut(s)	29
BfaI	CTAG	3 cut(s)	248, 383, 647
BfmI	CTRYAG	1 cut(s)	854
BfuAI	ACCTGC	1 cut(s)	859
BglII	AGATCT	1 cut(s)	1068
BisI	GCNGC	4 cut(s)	156, 348, 603, 854
BlpI	GCTNAGC	1 cut(s)	423
BlsI	GCNGC	4 cut(s)	157, 349, 604, 855
Bme1390I	CCNGG	1 cut(s)	1129
BmgBI	CACGTC	1 cut(s)	944
BmgT120I	GGNCC	2 cut(s)	563, 742
BmiI	GGNNCC	1 cut(s)	228
BmrFI	CCNGG	1 cut(s)	1129
BmrI	ACTGGG	1 cut(s)	530
BmsI	GCATC	4 cut(s)	111, 409, 454, 626
BmuI	ACTGGG	1 cut(s)	530
BpiI	GAAGAC	1 cut(s)	1082
BpmI	CTGGAG	2 cut(s)	263, 851
Bpu1102I	GCTNAGC	1 cut(s)	423
Bpu14I	TTCGAA	1 cut(s)	171
BpuEI	CTTGAG	1 cut(s)	557
BpuMI	CCSGG	1 cut(s)	1129
BsaAI	YACGTR	1 cut(s)	484
BsaI	GGTCTC	1 cut(s)	29
BsaJI	CCNNGG	3 cut(s)	372, 434, 1114
BsaXI	ACNNNNNCTCC	6 cut(s)	236, 266, 650, 680, 855, 885
Bsc4I	CCNNNNNNNGG	4 cut(s)	436, 920, 1061, 1159
Bse1I	ACTGG	3 cut(s)	499, 525, 1014
BseDI	CCNNGG	3 cut(s)	372, 434, 1114
BseLI	CCNNNNNNNGG	4 cut(s)	436, 920, 1061, 1159
BseMII	CTCAG	4 cut(s)	45, 321, 437, 863
BseNI	ACTGG	3 cut(s)	499, 525, 1014
BseXI	GCAGC	4 cut(s)	142, 334, 589, 840
BshFI	GGCC	3 cut(s)	565, 744, 1065
BshNI	GGYRCC	1 cut(s)	226
BsiSI	CCGG	1 cut(s)	1129
BslFI	GGGAC	2 cut(s)	555, 954
BslI	CCNNNNNNNGG	4 cut(s)	436, 920, 1061, 1159
BsmAI	GTCTC	1 cut(s)	29
BsmFI	GGGAC	2 cut(s)	555, 954
BsmI	GAATGC	1 cut(s)	300
BsnI	GGCC	3 cut(s)	565, 744, 1065
Bso31I	GGTCTC	1 cut(s)	29
Bsp119I	TTCGAA	1 cut(s)	171
Bsp143I	GATC	4 cut(s)	132, 402, 894, 1068
Bsp1720I	GCTNAGC	1 cut(s)	423
Bsp19I	CCATGG	2 cut(s)	434, 1114
BspACI	CCGC	2 cut(s)	874, 1107
BspANI	GGCC	3 cut(s)	565, 744, 1065
BspCNI	CTCAG	4 cut(s)	44, 320, 436, 862
BspLI	GGNNCC	1 cut(s)	228
BspMAI	CTGCAG	1 cut(s)	858
BspMI	ACCTGC	1 cut(s)	859
BspPI	GGATC	1 cut(s)	397
BspT104I	TTCGAA	1 cut(s)	171
BspT107I	GGYRCC	1 cut(s)	226
BspTNI	GGTCTC	1 cut(s)	29
BsrI	ACTGG	3 cut(s)	499, 525, 1014
BssECI	CCNNGG	3 cut(s)	372, 434, 1114
BssMI	GATC	4 cut(s)	132, 402, 894, 1068
BssT1I	CCWWGG	2 cut(s)	434, 1114
Bst4CI	ACNGT	4 cut(s)	47, 637, 1027, 1081
Bst6I	CTCTTC	2 cut(s)	203, 904
BstBAI	YACGTR	1 cut(s)	484
BstBI	TTCGAA	1 cut(s)	171
BstC8I	GCNNGC	2 cut(s)	596, 600
BstDEI	CTNAG	5 cut(s)	31, 72, 307, 423, 849
BstDSI	CCRYGG	2 cut(s)	434, 1114
BstEII	GGTNACC	1 cut(s)	1012
BstHHI	GCGC	1 cut(s)	290
BstKTI	GATC	4 cut(s)	135, 405, 897, 1071
BstMAI	GTCTC	1 cut(s)	29
BstMBI	GATC	4 cut(s)	132, 402, 894, 1068
BstMWI	GCNNNNNNNGC	2 cut(s)	152, 353
BstNSI	RCATGY	2 cut(s)	715, 1091
BstPI	GGTNACC	1 cut(s)	1012
BstSCI	CCNGG	1 cut(s)	1127
BstSFI	CTRYAG	1 cut(s)	854
BstV1I	GCAGC	4 cut(s)	142, 334, 589, 840
BstV2I	GAAGAC	1 cut(s)	1082
BstX2I	RGATCY	2 cut(s)	402, 1068
BstYI	RGATCY	2 cut(s)	402, 1068
BsuRI	GGCC	3 cut(s)	565, 744, 1065
BtgI	CCRYGG	2 cut(s)	434, 1114
BtrI	CACGTC	1 cut(s)	944
BtsIMutI	CAGTG	1 cut(s)	315
BveI	ACCTGC	1 cut(s)	859
Cac8I	GCNNGC	2 cut(s)	596, 600
CfoI	GCGC	1 cut(s)	290
Cfr13I	GGNCC	2 cut(s)	563, 742
Csp6I	GTAC	3 cut(s)	253, 633, 1007
CviAII	CATG	7 cut(s)	296, 435, 628, 712, 989, 1088, 1115
CviQI	GTAC	3 cut(s)	253, 633, 1007
DdeI	CTNAG	5 cut(s)	31, 72, 307, 423, 849
DpnI	GATC	4 cut(s)	134, 404, 896, 1070
DpnII	GATC	4 cut(s)	132, 402, 894, 1068
EaeI	YGGCCR	1 cut(s)	1063
Eam1104I	CTCTTC	2 cut(s)	203, 904
EarI	CTCTTC	2 cut(s)	203, 904
Eco130I	CCWWGG	2 cut(s)	434, 1114
Eco31I	GGTCTC	1 cut(s)	29
Eco91I	GGTNACC	1 cut(s)	1012
EcoO65I	GGTNACC	1 cut(s)	1012
EcoRI	GAATTC	1 cut(s)	178
EcoT14I	CCWWGG	2 cut(s)	434, 1114
ErhI	CCWWGG	2 cut(s)	434, 1114
FaeI	CATG	7 cut(s)	299, 438, 631, 715, 992, 1091, 1118
FaqI	GGGAC	2 cut(s)	555, 954
FatI	CATG	7 cut(s)	295, 434, 627, 711, 988, 1087, 1114
FbaI	TGATCA	1 cut(s)	132
Fnu4HI	GCNGC	4 cut(s)	156, 348, 603, 854
Fsp4HI	GCNGC	4 cut(s)	156, 348, 603, 854
FspBI	CTAG	3 cut(s)	248, 383, 647
GlaI	GCGC	1 cut(s)	289
GluI	GCNGC	4 cut(s)	156, 348, 603, 854
GsuI	CTGGAG	2 cut(s)	263, 851
HaeIII	GGCC	3 cut(s)	565, 744, 1065
HapII	CCGG	1 cut(s)	1129
HhaI	GCGC	1 cut(s)	290
Hin1II	CATG	7 cut(s)	299, 438, 631, 715, 992, 1091, 1118
Hin6I	GCGC	1 cut(s)	288
HinP1I	GCGC	1 cut(s)	288
HinfI	GANTC	3 cut(s)	266, 699, 890
HpaII	CCGG	1 cut(s)	1129
HphI	GGTGA	2 cut(s)	451, 1024
Hpy166II	GTNNAC	1 cut(s)	935
Hpy188I	TCNGA	4 cut(s)	34, 137, 376, 759
Hpy188III	TCNNGA	5 cut(s)	242, 277, 329, 647, 1072
Hpy8I	GTNNAC	1 cut(s)	935
Hpy99I	CGWCG	1 cut(s)	1085
HpyAV	CCTTC	2 cut(s)	241, 497
HpyCH4III	ACNGT	4 cut(s)	47, 637, 1027, 1081
HpyCH4IV	ACGT	2 cut(s)	483, 943
HpyCH4V	TGCA	7 cut(s)	124, 356, 451, 617, 683, 856, 1178
HpyF10VI	GCNNNNNNNGC	2 cut(s)	152, 353
HpyF3I	CTNAG	5 cut(s)	31, 72, 307, 423, 849
HpySE526I	ACGT	2 cut(s)	483, 943
Hsp92II	CATG	7 cut(s)	299, 438, 631, 715, 992, 1091, 1118
HspAI	GCGC	1 cut(s)	288
Ksp22I	TGATCA	1 cut(s)	132
Kzo9I	GATC	4 cut(s)	132, 402, 894, 1068
LmnI	GCTCC	1 cut(s)	244
Lsp1109I	GCAGC	4 cut(s)	142, 334, 589, 840
LweI	GCATC	4 cut(s)	111, 409, 454, 626
MaeI	CTAG	3 cut(s)	248, 383, 647
MaeII	ACGT	2 cut(s)	483, 943
MaeIII	GTNAC	3 cut(s)	516, 819, 1012
MalI	GATC	4 cut(s)	134, 404, 896, 1070
MboI	GATC	4 cut(s)	132, 402, 894, 1068
MboII	GAAGA	8 cut(s)	84, 94, 97, 220, 326, 564, 891, 1087
MflI	RGATCY	2 cut(s)	402, 1068
MlsI	TGGCCA	1 cut(s)	1065
MluNI	TGGCCA	1 cut(s)	1065
MlyI	GAGTC	1 cut(s)	260
MmeI	TCCRAC	1 cut(s)	515
Mox20I	TGGCCA	1 cut(s)	1065
MscI	TGGCCA	1 cut(s)	1065
MseI	TTAA	3 cut(s)	110, 548, 974
MslI	CAYNNNNRTG	1 cut(s)	1119
Msp20I	TGGCCA	1 cut(s)	1065
MspA1I	CMGCKG	3 cut(s)	829, 853, 1109
MspI	CCGG	1 cut(s)	1129
MspR9I	CCNGG	1 cut(s)	1129
Mva1269I	GAATGC	1 cut(s)	300
MwoI	GCNNNNNNNGC	2 cut(s)	152, 353
NciI	CCSGG	1 cut(s)	1129
NcoI	CCATGG	2 cut(s)	434, 1114
NdeII	GATC	4 cut(s)	132, 402, 894, 1068
NlaIII	CATG	7 cut(s)	299, 438, 631, 715, 992, 1091, 1118
NlaIV	GGNNCC	1 cut(s)	228
NmeAIII	GCCGAG	1 cut(s)	6
NmuCI	GTSAC	1 cut(s)	1012
NspI	RCATGY	2 cut(s)	715, 1091
NspV	TTCGAA	1 cut(s)	171
PaqCI	CACCTGC	1 cut(s)	859
PciI	ACATGT	2 cut(s)	711, 1087
PctI	GAATGC	1 cut(s)	300
PfeI	GAWTC	2 cut(s)	699, 890
PflMI	CCANNNNNTGG	2 cut(s)	920, 1061
PkrI	GCNGC	4 cut(s)	157, 349, 604, 855
PleI	GAGTC	1 cut(s)	260
PpsI	GAGTC	1 cut(s)	260
Ppu21I	YACGTR	1 cut(s)	484
PscI	ACATGT	2 cut(s)	711, 1087
PspEI	GGTNACC	1 cut(s)	1012
PspN4I	GGNNCC	1 cut(s)	228
PspPI	GGNCC	2 cut(s)	563, 742
PstI	CTGCAG	1 cut(s)	858
PsuI	RGATCY	2 cut(s)	402, 1068
PvuII	CAGCTG	2 cut(s)	829, 853
RsaI	GTAC	3 cut(s)	254, 634, 1008
RsaNI	GTAC	3 cut(s)	253, 633, 1007
RseI	CAYNNNNRTG	1 cut(s)	1119
SaqAI	TTAA	3 cut(s)	110, 548, 974
SatI	GCNGC	4 cut(s)	156, 348, 603, 854
Sau3AI	GATC	4 cut(s)	132, 402, 894, 1068
Sau96I	GGNCC	2 cut(s)	563, 742
SchI	GAGTC	1 cut(s)	260
ScrFI	CCNGG	1 cut(s)	1129
SfaNI	GCATC	4 cut(s)	111, 409, 454, 626
SfcI	CTRYAG	1 cut(s)	854
SfuI	TTCGAA	1 cut(s)	171
SmiMI	CAYNNNNRTG	1 cut(s)	1119
SmlI	CTYRAG	1 cut(s)	536
SmoI	CTYRAG	1 cut(s)	536
SsiI	CCGC	2 cut(s)	874, 1107
SspI	AATATT	1 cut(s)	1000
SspMI	CTAG	3 cut(s)	248, 383, 647
StyD4I	CCNGG	1 cut(s)	1127
StyI	CCWWGG	2 cut(s)	434, 1114
TaaI	ACNGT	4 cut(s)	47, 637, 1027, 1081
TaiI	ACGT	2 cut(s)	486, 946
TaqI	TCGA	4 cut(s)	171, 264, 697, 893
TfiI	GAWTC	2 cut(s)	699, 890
Tru1I	TTAA	3 cut(s)	110, 548, 974
Tru9I	TTAA	3 cut(s)	110, 548, 974
TscAI	CASTG	1 cut(s)	315
TseFI	GTSAC	1 cut(s)	1012
TseI	GCWGC	4 cut(s)	155, 347, 602, 853
Tsp45I	GTSAC	1 cut(s)	1012
TspDTI	ATGAA	1 cut(s)	782
TspGWI	ACGGA	1 cut(s)	778
TspRI	CASTG	1 cut(s)	315
Van91I	CCANNNNNTGG	2 cut(s)	920, 1061
XapI	RAATTY	2 cut(s)	178, 751
XbaI	TCTAGA	1 cut(s)	646
XceI	RCATGY	2 cut(s)	715, 1091
XspI	CTAG	3 cut(s)	248, 383, 647

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.