RchiOBHm_Chr5g0076621

oligopeptide transporter

Basic Information

Type: gene
Biological Identity
rosa_chinensis
5
Physical Location & Seq
Reverse (-)
82228037 .. 82230214
2178 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ35127

Sequence Viewer

Length: 1482 bp
ATGAGACCAAAGGGAGGCCGTACTAGGCTGCAGTACTTCAGCTTAGTATCTGTATGCAGCTTCGCTTACTACATTATTCCAAGTTTTTTCTTCCCCTCCATAGGCGCTCTCTCCTTTGTTTGTTGGATATGGAAGGACTCCGTCACCGCCCAACAGATTGGTTCCGGCCTCAATGGCCTTGGCATTGGCTCGTTTGGCCTTGATTGGTCAACAGTTGCTAGCTTCTTGAAGAGCCCATTAGCCACACCCGGTTTTGTCTTCATGAACATGTTGGCTGATGCCAAGAAGTTCCCCTTCTTTTCTTCTTCTACTTTCGACTCCACTGGCAAACGCTATAATGTTTCCCGAGTTCTGGACCAGAAAACTTTCGATATTAATTTGAAAGAGTATAACAGTTACAGTAAACTCTATCTCTCTATGTACTTTGCCTCGAGTTATGGGTGGAGCTTTGCTGGTCTGACAGCAACTATTTCACATGTTGCACTCTTCCATGGAAAAGACATCTGGGATATGTGGAAAAAGACTTCTACCGCAGCGAAAGATCAGCTTGGGGACATCCACACACGGTTGATGAAGAAGAACTACGAGGCAGTCCCACAATGGTGGTTTCACATCATGCTTGTTTTAATGGTTGGCCTTTCCATCTGGGTCTGTGAAGGTTTTGGGAAACAGCTCCAACTTCCATGGTGGGGAGTCTTACTGGCTTGTGCCATTGCACTAACTTTCACCTTACCCATTGGCATTATTCAAGCCACAACAAACATGCAACCGGGGCACAATGTGATCACAGAGTTGGTTATTGGGTATCTTTATCCTGGGAAGCCTCTTGCCAATGTGACTTTCAAAACATATGGCTATATCAGCATGTCACAAGCACTCATGTTTCTCGGTGACTTCAAATTAGGTCACTATATGAAGATCCCTCCCAAGTCCATGTTTATTGCGCAGTTAGCTGGAACACTGGTCGCTTCAAGTACCTTTTTCAGCACATCCTGGTGGCTTCTCAACACTGTTGAGAACATCTGTGATCCATCAAAACTGCCAGAGGGAAGTCCATGGACATGTCCTAGTGATGAGGTCTTCTACAATGCCTCAATCATTTGGGGAGTTATAGGCCCTCTCAGAATGTTCACTAAGCATGGAAACTACCCGGAGATGAACTGGTTCTTCCTACTTGGTTTACTTGCACCTATACCAGTTTGGCTCCTAGCGCGCAAATTCCCCAAGCTAGAGTGGATTAAGCTCATAAACATGCCTGTCATCATTGGAACCACAGCAGTCATGCCACCAGCTAAAGCTATCCACTACTTGATGTGGTTCACAGTTGGAATTTTCTTTAGCTTCTATGTTTATCGACAACACAGGGCATGGTGGGCTAGGCATAACTATATCCTATCAGCTGCTTTGGATGCCGGTGTGGCCTTCACGGCAATTCTTGTGTATTTCACCCTTCAGAGTAAGGGTATTAAAAATAGAAGCTAA

Protein Analysis

493

Amino Acids

55.81

Weight (kDa)

9.51

Isoelectric Point (pI)

35.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
OPT PF03169 7 - 482 3.2e-104 OPT oligopeptide transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 945
AccII CGCG 1 cut(s) 1213
AciI CCGC 2 cut(s) 147, 531
AclWI GGATC 2 cut(s) 913, 1022
AcsI RAATTY 2 cut(s) 1217, 1329
AcuI CTGAAG 2 cut(s) 22, 1436
AdeI CACNNNGTG 1 cut(s) 781
AfaI GTAC 4 cut(s) 22, 35, 422, 976
AfiI CCNNNNNNNGG 4 cut(s) 14, 101, 352, 689
AflIII ACRYGT 3 cut(s) 267, 475, 1061
AgsI TTSAA 6 cut(s) 229, 382, 749, 844, 898, 972
AjnI CCWGG 2 cut(s) 814, 992
AjuI GAANNNNNNNTTGG 2 cut(s) 824, 856
AleI CACNNNNGTG 1 cut(s) 601
AlwI GGATC 2 cut(s) 913, 1022
Ama87I CYCGRG 2 cut(s) 345, 430
AoxI GGCC 7 cut(s) 16, 166, 175, 196, 634, 1114, 1419
ApeKI GCWGC 4 cut(s) 28, 57, 533, 1400
ApoI RAATTY 2 cut(s) 1217, 1329
AseI ATTAAT 1 cut(s) 375
Asp700I GAANNNNTTC 2 cut(s) 365, 1163
AspLEI GCGC 4 cut(s) 107, 946, 1213, 1215
AspS9I GGNCC 2 cut(s) 355, 1115
AsuC2I CCSGG 3 cut(s) 249, 771, 1151
AsuHPI GGTGA 4 cut(s) 136, 718, 902, 1438
AsuNHI GCTAGC 1 cut(s) 218
AvaI CYCGRG 2 cut(s) 345, 430
AvaII GGWCC 1 cut(s) 355
BaeGI GKGCMC 1 cut(s) 777
BanII GRGCYC 1 cut(s) 236
BarI GAAGNNNNNNTAC 2 cut(s) 566, 598
BbsI GAAGAC 2 cut(s) 250, 1072
BbvI GCAGC 4 cut(s) 15, 69, 545, 1387
BccI CCATC 2 cut(s) 650, 1039
BceAI ACGGC 2 cut(s) 3, 1443
BciT130I CCWGG 2 cut(s) 816, 994
BclI TGATCA 1 cut(s) 783
BcnI CCSGG 3 cut(s) 249, 771, 1151
BfaI CTAG 6 cut(s) 24, 219, 1068, 1208, 1229, 1377
BfmI CTRYAG 1 cut(s) 29
BfoI RGCGCY 1 cut(s) 108
BglI GCCNNNNNGGC 3 cut(s) 174, 1418, 1427
BisI GCNGC 4 cut(s) 29, 58, 534, 1401
BlsI GCNGC 4 cut(s) 30, 59, 535, 1402
BmcAI AGTACT 1 cut(s) 35
Bme1390I CCNGG 5 cut(s) 249, 771, 816, 994, 1151
Bme18I GGWCC 1 cut(s) 355
BmeT110I CYCGRG 2 cut(s) 345, 430
BmgT120I GGNCC 2 cut(s) 355, 1115
BmiI GGNNCC 3 cut(s) 163, 1205, 1270
BmrFI CCNGG 5 cut(s) 249, 771, 816, 994, 1151
BmsI GCATC 2 cut(s) 268, 1399
BmtI GCTAGC 1 cut(s) 222
BpiI GAAGAC 2 cut(s) 250, 1072
BpuMI CCSGG 3 cut(s) 249, 771, 1151
BsaJI CCNNGG 6 cut(s) 178, 490, 683, 770, 815, 1055
Bsc4I CCNNNNNNNGG 4 cut(s) 14, 101, 352, 689
Bse118I RCCGGY 1 cut(s) 1412
Bse1I ACTGG 5 cut(s) 328, 705, 966, 1166, 1196
Bse3DI GCAATG 1 cut(s) 711
BseBI CCWGG 2 cut(s) 816, 994
BseDI CCNNGG 6 cut(s) 178, 490, 683, 770, 815, 1055
BseGI GGATG 3 cut(s) 555, 989, 1414
BseLI CCNNNNNNNGG 4 cut(s) 14, 101, 352, 689
BseMI GCAATG 1 cut(s) 711
BseMII CTCAG 1 cut(s) 1135
BseNI ACTGG 5 cut(s) 328, 705, 966, 1166, 1196
BsePI GCGCGC 1 cut(s) 1211
BseSI GKGCMC 1 cut(s) 777
BseXI GCAGC 4 cut(s) 15, 69, 545, 1387
Bsh1236I CGCG 1 cut(s) 1213
BshFI GGCC 7 cut(s) 18, 168, 177, 198, 636, 1116, 1421
BsiHKCI CYCGRG 2 cut(s) 345, 430
BsiSI CCGG 5 cut(s) 165, 249, 770, 1151, 1413
BslFI GGGAC 2 cut(s) 566, 578
BslI CCNNNNNNNGG 4 cut(s) 14, 101, 352, 689
BsmFI GGGAC 2 cut(s) 566, 578
BsnI GGCC 7 cut(s) 18, 168, 177, 198, 636, 1116, 1421
BsoBI CYCGRG 2 cut(s) 345, 430
Bsp1286I GDGCHC 2 cut(s) 236, 777
Bsp143I GATC 4 cut(s) 541, 783, 918, 1027
Bsp19I CCATGG 3 cut(s) 490, 683, 1055
BspACI CCGC 2 cut(s) 147, 531
BspANI GGCC 7 cut(s) 18, 168, 177, 198, 636, 1116, 1421
BspCNI CTCAG 1 cut(s) 1134
BspFNI CGCG 1 cut(s) 1213
BspHI TCATGA 1 cut(s) 261
BspLI GGNNCC 3 cut(s) 163, 1205, 1270
BspMAI CTGCAG 1 cut(s) 33
BspOI GCTAGC 1 cut(s) 222
BspPI GGATC 2 cut(s) 913, 1022
BspQI GCTCTTC 1 cut(s) 224
BsrDI GCAATG 1 cut(s) 711
BsrFI RCCGGY 1 cut(s) 1412
BsrI ACTGG 5 cut(s) 328, 705, 966, 1166, 1196
BssAI RCCGGY 1 cut(s) 1412
BssECI CCNNGG 6 cut(s) 178, 490, 683, 770, 815, 1055
BssHII GCGCGC 1 cut(s) 1211
BssMI GATC 4 cut(s) 541, 783, 918, 1027
BssT1I CCWWGG 4 cut(s) 178, 490, 683, 1055
Bst2UI CCWGG 2 cut(s) 816, 994
Bst4CI ACNGT 6 cut(s) 214, 395, 401, 567, 1012, 1324
Bst6I CTCTTC 2 cut(s) 224, 491
BstC8I GCNNGC 2 cut(s) 220, 1213
BstDEI CTNAG 3 cut(s) 43, 1121, 1134
BstDSI CCRYGG 3 cut(s) 490, 683, 1055
BstF5I GGATG 3 cut(s) 555, 989, 1414
BstFNI CGCG 1 cut(s) 1213
BstH2I RGCGCY 1 cut(s) 108
BstHHI GCGC 4 cut(s) 107, 946, 1213, 1215
BstKTI GATC 4 cut(s) 544, 786, 921, 1030
BstMBI GATC 4 cut(s) 541, 783, 918, 1027
BstNI CCWGG 2 cut(s) 816, 994
BstNSI RCATGY 6 cut(s) 271, 479, 766, 868, 1065, 1255
BstSCI CCNGG 5 cut(s) 247, 769, 814, 992, 1149
BstSFI CTRYAG 1 cut(s) 29
BstSLI GKGCMC 1 cut(s) 777
BstUI CGCG 1 cut(s) 1213
BstV1I GCAGC 4 cut(s) 15, 69, 545, 1387
BstV2I GAAGAC 2 cut(s) 250, 1072
BstX2I RGATCY 1 cut(s) 918
BstXI CCANNNNNNTGG 2 cut(s) 158, 603
BstYI RGATCY 1 cut(s) 918
BsuRI GGCC 7 cut(s) 18, 168, 177, 198, 636, 1116, 1421
BtgI CCRYGG 3 cut(s) 490, 683, 1055
BtsCI GGATG 3 cut(s) 555, 989, 1414
BtsIMutI CAGTG 3 cut(s) 321, 959, 1008
Cac8I GCNNGC 2 cut(s) 220, 1213
CciI TCATGA 1 cut(s) 261
CfoI GCGC 4 cut(s) 107, 946, 1213, 1215
Cfr10I RCCGGY 1 cut(s) 1412
Cfr13I GGNCC 2 cut(s) 355, 1115
Csp6I GTAC 4 cut(s) 21, 34, 421, 975
CviQI GTAC 4 cut(s) 21, 34, 421, 975
DdeI CTNAG 3 cut(s) 43, 1121, 1134
DpnI GATC 4 cut(s) 543, 785, 920, 1029
DpnII GATC 4 cut(s) 541, 783, 918, 1027
DraIII CACNNNGTG 1 cut(s) 781
Eam1104I CTCTTC 2 cut(s) 224, 491
EarI CTCTTC 2 cut(s) 224, 491
Eco130I CCWWGG 4 cut(s) 178, 490, 683, 1055
Eco24I GRGCYC 1 cut(s) 236
Eco47I GGWCC 1 cut(s) 355
Eco57I CTGAAG 2 cut(s) 22, 1436
Eco88I CYCGRG 2 cut(s) 345, 430
EcoO109I RGGNCCY 1 cut(s) 1115
EcoRII CCWGG 2 cut(s) 814, 992
EcoT14I CCWWGG 4 cut(s) 178, 490, 683, 1055
EcoT38I GRGCYC 1 cut(s) 236
ErhI CCWWGG 4 cut(s) 178, 490, 683, 1055
FalI AAGNNNNNCTT 4 cut(s) 278, 310, 531, 563
FaqI GGGAC 2 cut(s) 566, 578
FauNDI CATATG 1 cut(s) 850
FbaI TGATCA 1 cut(s) 783
Fnu4HI GCNGC 4 cut(s) 29, 58, 534, 1401
FokI GGATG 3 cut(s) 542, 976, 1421
FriOI GRGCYC 1 cut(s) 236
Fsp4HI GCNGC 4 cut(s) 29, 58, 534, 1401
FspBI CTAG 6 cut(s) 24, 219, 1068, 1208, 1229, 1377
FspI TGCGCA 1 cut(s) 945
GlaI GCGC 4 cut(s) 106, 945, 1212, 1214
GluI GCNGC 4 cut(s) 29, 58, 534, 1401
HaeII RGCGCY 1 cut(s) 108
HaeIII GGCC 7 cut(s) 18, 168, 177, 198, 636, 1116, 1421
HapII CCGG 5 cut(s) 165, 249, 770, 1151, 1413
HhaI GCGC 4 cut(s) 107, 946, 1213, 1215
Hin6I GCGC 4 cut(s) 105, 944, 1211, 1213
HinP1I GCGC 4 cut(s) 105, 944, 1211, 1213
HincII GTYRAC 1 cut(s) 210
HindII GTYRAC 1 cut(s) 210
HinfI GANTC 3 cut(s) 137, 317, 693
HpaII CCGG 5 cut(s) 165, 249, 770, 1151, 1413
HphI GGTGA 4 cut(s) 136, 718, 902, 1438
Hpy166II GTNNAC 5 cut(s) 210, 404, 1131, 1181, 1320
Hpy188I TCNGA 3 cut(s) 459, 1124, 1455
Hpy188III TCNNGA 4 cut(s) 226, 262, 345, 353
Hpy8I GTNNAC 5 cut(s) 210, 404, 1131, 1181, 1320
HpyAV CCTTC 5 cut(s) 127, 304, 650, 1432, 1460
HpyCH4III ACNGT 6 cut(s) 214, 395, 401, 567, 1012, 1324
HpyCH4V TGCA 6 cut(s) 31, 57, 482, 716, 766, 1187
HpyF3I CTNAG 3 cut(s) 43, 1121, 1134
HspAI GCGC 4 cut(s) 105, 944, 1211, 1213
Ksp22I TGATCA 1 cut(s) 783
Kzo9I GATC 4 cut(s) 541, 783, 918, 1027
LguI GCTCTTC 1 cut(s) 224
LmnI GCTCC 3 cut(s) 444, 678, 1209
Lsp1109I GCAGC 4 cut(s) 15, 69, 545, 1387
LweI GCATC 2 cut(s) 268, 1399
MaeI CTAG 6 cut(s) 24, 219, 1068, 1208, 1229, 1377
MaeIII GTNAC 6 cut(s) 142, 395, 835, 867, 890, 905
MalI GATC 4 cut(s) 543, 785, 920, 1029
MboI GATC 4 cut(s) 541, 783, 918, 1027
MflI RGATCY 1 cut(s) 918
MhlI GDGCHC 2 cut(s) 236, 777
MluCI AATT 5 cut(s) 376, 899, 1217, 1329, 1431
MlyI GAGTC 3 cut(s) 131, 311, 702
MmeI TCCRAC 3 cut(s) 104, 700, 1306
MroXI GAANNNNTTC 2 cut(s) 365, 1163
MseI TTAA 4 cut(s) 375, 626, 1239, 1467
MslI CAYNNNNRTG 5 cut(s) 266, 601, 994, 1060, 1250
MspA1I CMGCKG 1 cut(s) 1400
MspI CCGG 5 cut(s) 165, 249, 770, 1151, 1413
MspR9I CCNGG 5 cut(s) 249, 771, 816, 994, 1151
MvaI CCWGG 2 cut(s) 816, 994
MvnI CGCG 1 cut(s) 1213
NciI CCSGG 3 cut(s) 249, 771, 1151
NcoI CCATGG 3 cut(s) 490, 683, 1055
NdeI CATATG 1 cut(s) 850
NdeII GATC 4 cut(s) 541, 783, 918, 1027
NheI GCTAGC 1 cut(s) 218
NlaIV GGNNCC 3 cut(s) 163, 1205, 1270
NmuCI GTSAC 5 cut(s) 142, 835, 867, 890, 905
NsbI TGCGCA 1 cut(s) 945
NspI RCATGY 6 cut(s) 271, 479, 766, 868, 1065, 1255
OliI CACNNNNGTG 1 cut(s) 601
PaeR7I CTCGAG 1 cut(s) 430
PagI TCATGA 1 cut(s) 261
PauI GCGCGC 1 cut(s) 1211
PciI ACATGT 3 cut(s) 267, 475, 1061
PciSI GCTCTTC 1 cut(s) 224
PdmI GAANNNNTTC 2 cut(s) 365, 1163
PflFI GACNNNGTC 1 cut(s) 140
PkrI GCNGC 4 cut(s) 30, 59, 535, 1402
PleI GAGTC 3 cut(s) 131, 311, 701
PpsI GAGTC 3 cut(s) 131, 311, 701
PscI ACATGT 3 cut(s) 267, 475, 1061
PshBI ATTAAT 1 cut(s) 375
Psp6I CCWGG 2 cut(s) 814, 992
PspGI CCWGG 2 cut(s) 814, 992
PspN4I GGNNCC 3 cut(s) 163, 1205, 1270
PspPI GGNCC 2 cut(s) 355, 1115
PspXI VCTCGAGB 1 cut(s) 430
PstI CTGCAG 1 cut(s) 33
PsuI RGATCY 1 cut(s) 918
PsyI GACNNNGTC 1 cut(s) 140
PteI GCGCGC 1 cut(s) 1211
PvuII CAGCTG 1 cut(s) 1400
RsaI GTAC 4 cut(s) 22, 35, 422, 976
RsaNI GTAC 4 cut(s) 21, 34, 421, 975
RseI CAYNNNNRTG 5 cut(s) 266, 601, 994, 1060, 1250
SapI GCTCTTC 1 cut(s) 224
SaqAI TTAA 4 cut(s) 375, 626, 1239, 1467
SatI GCNGC 4 cut(s) 29, 58, 534, 1401
Sau3AI GATC 4 cut(s) 541, 783, 918, 1027
Sau96I GGNCC 2 cut(s) 355, 1115
ScaI AGTACT 1 cut(s) 35
SchI GAGTC 3 cut(s) 131, 311, 702
ScrFI CCNGG 5 cut(s) 249, 771, 816, 994, 1151
SduI GDGCHC 2 cut(s) 236, 777
SfaNI GCATC 2 cut(s) 268, 1399
SfcI CTRYAG 1 cut(s) 29
SfiI GGCCNNNNNGGCC 1 cut(s) 174
Sfr274I CTCGAG 1 cut(s) 430
SinI GGWCC 1 cut(s) 355
SlaI CTCGAG 1 cut(s) 430
SmiMI CAYNNNNRTG 5 cut(s) 266, 601, 994, 1060, 1250
SmlI CTYRAG 1 cut(s) 430
SmoI CTYRAG 1 cut(s) 430
Sse9I AATT 5 cut(s) 376, 899, 1217, 1329, 1431
SsiI CCGC 2 cut(s) 147, 531
SspMI CTAG 6 cut(s) 24, 219, 1068, 1208, 1229, 1377
StyD4I CCNGG 5 cut(s) 247, 769, 814, 992, 1149
StyI CCWWGG 4 cut(s) 178, 490, 683, 1055
TaaI ACNGT 6 cut(s) 214, 395, 401, 567, 1012, 1324
TaqI TCGA 4 cut(s) 315, 369, 431, 1354
TasI AATT 5 cut(s) 376, 899, 1217, 1329, 1431
TatI WGTACW 2 cut(s) 33, 420
Tru1I TTAA 4 cut(s) 375, 626, 1239, 1467
Tru9I TTAA 4 cut(s) 375, 626, 1239, 1467
TscAI CASTG 3 cut(s) 328, 966, 1015
TseFI GTSAC 5 cut(s) 142, 835, 867, 890, 905
TseI GCWGC 4 cut(s) 28, 57, 533, 1400
Tsp45I GTSAC 5 cut(s) 142, 835, 867, 890, 905
TspDTI ATGAA 5 cut(s) 250, 278, 587, 929, 1172
TspGWI ACGGA 1 cut(s) 130
TspRI CASTG 3 cut(s) 328, 966, 1015
Tth111I GACNNNGTC 1 cut(s) 140
VpaK11BI GGWCC 1 cut(s) 355
VspI ATTAAT 1 cut(s) 375
XapI RAATTY 2 cut(s) 1217, 1329
XceI RCATGY 6 cut(s) 271, 479, 766, 868, 1065, 1255
XhoI CTCGAG 1 cut(s) 430
XmnI GAANNNNTTC 2 cut(s) 365, 1163
XspI CTAG 6 cut(s) 24, 219, 1068, 1208, 1229, 1377
ZrmI AGTACT 1 cut(s) 35
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.