Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr11

Orthogroup ID

OG0000850

Physical Location & Seq

Genomic Coordinates Forward (+)

2280205 .. 2281686

Gene Structure 1482 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom11g02890.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 930 bp

ATGGCTGCGACCCTTCCAACCAGAAAATTCCGAGTCCCCTTCACAAAATGGTCGTTTACAATGAATCCAGGGCCTTTCAATCTGAAAGAACATGTGAGATCGATCACCATATTTGCTAACTCGGGAGCAGGCGGTGTTTATGCAGTACACATCATCACAATTGTCAAGGCCTTCTACCACAGGAAGCAGCATCCTGCAGCAGCCTTCTTGTTAGCACAGACTACTCAGATGCTTGGGTATGGATGGGCAGGCTTATTCAGAAAATACCTTGTTGACTCCCCTTACATGTGGTGGCCTGCAAATCTGGTTCAAGTTTCTCTCTTCAGGGCATTACATGAGAAGGAAAAGAGACCAAAGGGAGGCCTTACTAGGCTGCAGTTCTTCCTCATGGTTTTCGTATGCAGCTTTGCTTACTACATTTTTCCCGGATTTCTCTTCCCCTCCATCTCTGCTTTCTCCATTGTTTGCTTGATATGGAAGAGCTCCATCACTGCTCAACAGATTGGTTCTGGCATGAATGGCCTTGGCATTGGCTCTTTTGGCTTCGATTGGTCCACCATTGCTGGCTTCTTGGGCAGCCCTTTAGCCACACCAGGGTTTGCCATTATCAACTTGTTAGTTGGTTTTGTCTTGATCCTCTACATTATTACCCCCATTTCTTATTGGTCCAATGCGTATGATGCTAAGAAGTTTCCAATCTTCACCTCTCATACTTTCGACTCGAAGGGCCAGACCTATGATCTTTCCCGGGTTCTGAATCAAACAACTTTCGACATCGATCGTGAAGCGTATAACAATTACAGTAAACTCTATCTCAGTACCTTCTTTGCCTTCAGTTATGGCTTGAGCTTTGCCACTCTTACAGCTACTATTTCACATGTTGCCCTCTTCCATGGAAACAATTTGGCGTATGTGGAAGAAGACAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006857 GO:0008150 GO:0015833 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0035672 GO:0035673 GO:0042886 GO:0042887 GO:0044425 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OPT

Protein Analysis

310

Amino Acids

34.74

Weight (kDa)

9.52

Isoelectric Point (pI)

33.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000850)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26590 AT5G55930
fragaria_vesca	FvH4_3g42570 FvH4_3g42651 FvH4_3g42660 FvH4_3g42660 FvH4_3g42660 FvH4_3g42660
malus_domestica	MD03G1029800.v1.1 MD03G1029900.v1.1 MD03G1030000.v1.1 MD07G1217200.v1.1 MD11G1034800.v1.1 MD11G1035000.v1.1 MD11G1035100.v1.1
prunus_persica	Prupe.6G026000_v2.0.a1 Prupe.6G026100_v2.0.a1 Prupe.6G026200_v2.0.a1 Prupe.6G026200_v2.0.a1 Prupe.6G026300_v2.0.a1
pyrus_communis	pycom03g02480 pycom03g02500 pycom11g02890 pycom11g02900
rosa_chinensis	RchiOBHm_Chr5g0076291 RchiOBHm_Chr5g0076301 RchiOBHm_Chr5g0076311 RchiOBHm_Chr5g0076621 RchiOBHm_Chr5g0076671
rosa_laevigata	RLG00000036614 RLG00000036615 RLG00000036616 RLG00000036617
rosa_multiflora	Rmu_co8320621.1_g000001 Rmu_co8419599.1_g000001 Rmu_co8455339.1_g000001 Rmu_sc0005961.1_g000002 Rmu_sc0005961.1_g000003 Rmu_sc0013948.1_g000002 Rmu_sc0035770.1_g000001 Rmu_sc0040547.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005490 Rroxscaffold_1G00005550 Rroxscaffold_1G00005560 Rroxscaffold_1G00005570
rosa_rugosa	Rorug05G0446700.1 Rorug05G0447000 Rorug05G0447100 Rorug05G0447200 Rorug05G0447200 Rorug05G0447300
rosa_samantha	Rh5AG501900 Rh5AG502000 Rh5AG502100 Rh5BG523700 Rh5BG523800 Rh5BG523900 Rh5CG547400 Rh5CG547500 Rh5CG547600 Rh5DG535900 Rh5DG536000 Rh5DG536100 Rh7AG436800
rosa_wichuraiana	Rw0G015040 Rw0G015060 Rw5G046590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	132
AclWI	GGATC	1 cut(s)	628
AcsI	RAATTY	1 cut(s)	26
AcuI	CTGAAG	2 cut(s)	307, 817
AfaI	GTAC	2 cut(s)	147, 820
AfiI	CCNNNNNNNGG	2 cut(s)	359, 594
AflIII	ACRYGT	3 cut(s)	91, 285, 877
AgsI	TTSAA	2 cut(s)	79, 311
AjnI	CCWGG	2 cut(s)	67, 592
AluBI	AGCT	4 cut(s)	405, 483, 849, 866
AluI	AGCT	4 cut(s)	405, 483, 849, 866
Alw21I	GWGCWC	1 cut(s)	485
Alw26I	GTCTC	1 cut(s)	343
AlwI	GGATC	1 cut(s)	628
Ama87I	CYCGRG	2 cut(s)	121, 747
AoxI	GGCC	6 cut(s)	71, 168, 293, 361, 520, 727
ApeKI	GCWGC	7 cut(s)	5, 187, 197, 200, 373, 402, 576
ApoI	RAATTY	1 cut(s)	26
AspS9I	GGNCC	4 cut(s)	71, 552, 666, 727
AsuC2I	CCSGG	3 cut(s)	426, 748, 749
AsuHPI	GGTGA	2 cut(s)	97, 694
AvaI	CYCGRG	2 cut(s)	121, 747
AvaII	GGWCC	2 cut(s)	552, 666
BanII	GRGCYC	1 cut(s)	485
Bbv12I	GWGCWC	1 cut(s)	485
BbvI	GCAGC	6 cut(s)	199, 209, 212, 360, 414, 588
BccI	CCATC	3 cut(s)	237, 452, 494
BciT130I	CCWGG	2 cut(s)	69, 594
BcnI	CCSGG	3 cut(s)	426, 748, 749
BcoDI	GTCTC	1 cut(s)	343
BfaI	CTAG	2 cut(s)	369, 928
BfmI	CTRYAG	2 cut(s)	195, 374
BisI	GCNGC	7 cut(s)	6, 188, 198, 201, 374, 403, 577
BlsI	GCNGC	7 cut(s)	7, 189, 199, 202, 375, 404, 578
Bme1390I	CCNGG	5 cut(s)	69, 426, 594, 748, 749
Bme18I	GGWCC	2 cut(s)	552, 666
BmeT110I	CYCGRG	2 cut(s)	121, 747
BmgT120I	GGNCC	4 cut(s)	71, 552, 666, 727
BmrFI	CCNGG	5 cut(s)	69, 426, 594, 748, 749
BmsI	GCATC	3 cut(s)	199, 219, 670
BpuEI	CTTGAG	1 cut(s)	865
BpuMI	CCSGG	3 cut(s)	426, 748, 749
Bsa29I	ATCGAT	2 cut(s)	101, 777
BsaI	GGTCTC	1 cut(s)	343
BsaJI	CCNNGG	5 cut(s)	68, 523, 593, 747, 892
Bsc4I	CCNNNNNNNGG	2 cut(s)	359, 594
Bse3DI	GCAATG	1 cut(s)	558
BseBI	CCWGG	2 cut(s)	69, 594
BseCI	ATCGAT	2 cut(s)	101, 777
BseDI	CCNNGG	5 cut(s)	68, 523, 593, 747, 892
BseGI	GGATG	2 cut(s)	190, 248
BseLI	CCNNNNNNNGG	2 cut(s)	359, 594
BseMI	GCAATG	1 cut(s)	558
BseMII	CTCAG	2 cut(s)	239, 829
BseXI	GCAGC	6 cut(s)	199, 209, 212, 360, 414, 588
Bsh1285I	CGRYCG	1 cut(s)	781
BshFI	GGCC	6 cut(s)	73, 170, 295, 363, 522, 729
BshVI	ATCGAT	2 cut(s)	101, 777
BsiEI	CGRYCG	1 cut(s)	781
BsiHKAI	GWGCWC	1 cut(s)	485
BsiHKCI	CYCGRG	2 cut(s)	121, 747
BsiSI	CCGG	2 cut(s)	426, 748
BslFI	GGGAC	1 cut(s)	20
BslI	CCNNNNNNNGG	2 cut(s)	359, 594
BsmAI	GTCTC	1 cut(s)	343
BsmFI	GGGAC	1 cut(s)	20
BsnI	GGCC	6 cut(s)	73, 170, 295, 363, 522, 729
Bso31I	GGTCTC	1 cut(s)	343
BsoBI	CYCGRG	2 cut(s)	121, 747
Bsp1286I	GDGCHC	1 cut(s)	485
Bsp143I	GATC	5 cut(s)	98, 102, 633, 739, 778
Bsp19I	CCATGG	1 cut(s)	892
BspACI	CCGC	1 cut(s)	132
BspANI	GGCC	6 cut(s)	73, 170, 295, 363, 522, 729
BspCNI	CTCAG	2 cut(s)	238, 828
BspDI	ATCGAT	2 cut(s)	101, 777
BspMAI	CTGCAG	2 cut(s)	199, 378
BspPI	GGATC	1 cut(s)	628
BspQI	GCTCTTC	1 cut(s)	473
BspTNI	GGTCTC	1 cut(s)	343
BsrDI	GCAATG	1 cut(s)	558
BssECI	CCNNGG	5 cut(s)	68, 523, 593, 747, 892
BssMI	GATC	5 cut(s)	98, 102, 633, 739, 778
BssT1I	CCWWGG	2 cut(s)	523, 892
Bst2UI	CCWGG	2 cut(s)	69, 594
Bst4CI	ACNGT	1 cut(s)	803
Bst6I	CTCTTC	4 cut(s)	326, 440, 473, 893
BstC8I	GCNNGC	4 cut(s)	130, 250, 297, 565
BstDEI	CTNAG	3 cut(s)	225, 684, 815
BstDSI	CCRYGG	1 cut(s)	892
BstF5I	GGATG	2 cut(s)	190, 248
BstKTI	GATC	5 cut(s)	101, 105, 636, 742, 781
BstMAI	GTCTC	1 cut(s)	343
BstMBI	GATC	5 cut(s)	98, 102, 633, 739, 778
BstMCI	CGRYCG	1 cut(s)	781
BstMWI	GCNNNNNNNGC	4 cut(s)	519, 540, 573, 680
BstNI	CCWGG	2 cut(s)	69, 594
BstNSI	RCATGY	3 cut(s)	95, 289, 881
BstSCI	CCNGG	5 cut(s)	67, 424, 592, 746, 747
BstSFI	CTRYAG	2 cut(s)	195, 374
BstV1I	GCAGC	6 cut(s)	199, 209, 212, 360, 414, 588
Bsu15I	ATCGAT	2 cut(s)	101, 777
BsuRI	GGCC	6 cut(s)	73, 170, 295, 363, 522, 729
BsuTUI	ATCGAT	2 cut(s)	101, 777
BtgI	CCRYGG	1 cut(s)	892
BtsCI	GGATG	2 cut(s)	190, 248
BtsI	GCAGTG	1 cut(s)	489
BtsIMutI	CAGTG	1 cut(s)	489
Cac8I	GCNNGC	4 cut(s)	130, 250, 297, 565
Cfr13I	GGNCC	4 cut(s)	71, 552, 666, 727
Cfr9I	CCCGGG	1 cut(s)	747
ClaI	ATCGAT	2 cut(s)	101, 777
Csp6I	GTAC	2 cut(s)	146, 819
CviAII	CATG	7 cut(s)	92, 286, 335, 388, 514, 878, 893
CviQI	GTAC	2 cut(s)	146, 819
DdeI	CTNAG	3 cut(s)	225, 684, 815
DpnI	GATC	5 cut(s)	100, 104, 635, 741, 780
DpnII	GATC	5 cut(s)	98, 102, 633, 739, 778
Eam1104I	CTCTTC	4 cut(s)	326, 440, 473, 893
EarI	CTCTTC	4 cut(s)	326, 440, 473, 893
Ecl136II	GAGCTC	1 cut(s)	483
Eco130I	CCWWGG	2 cut(s)	523, 892
Eco147I	AGGCCT	2 cut(s)	170, 363
Eco24I	GRGCYC	1 cut(s)	485
Eco31I	GGTCTC	1 cut(s)	343
Eco47I	GGWCC	2 cut(s)	552, 666
Eco53kI	GAGCTC	1 cut(s)	483
Eco57I	CTGAAG	2 cut(s)	307, 817
Eco88I	CYCGRG	2 cut(s)	121, 747
EcoICRI	GAGCTC	1 cut(s)	483
EcoO109I	RGGNCCY	1 cut(s)	71
EcoRII	CCWGG	2 cut(s)	67, 592
EcoT14I	CCWWGG	2 cut(s)	523, 892
EcoT38I	GRGCYC	1 cut(s)	485
ErhI	CCWWGG	2 cut(s)	523, 892
FaeI	CATG	7 cut(s)	95, 289, 338, 391, 517, 881, 896
FaqI	GGGAC	1 cut(s)	20
FatI	CATG	7 cut(s)	91, 285, 334, 387, 513, 877, 892
Fnu4HI	GCNGC	7 cut(s)	6, 188, 198, 201, 374, 403, 577
FokI	GGATG	2 cut(s)	177, 255
FriOI	GRGCYC	1 cut(s)	485
Fsp4HI	GCNGC	7 cut(s)	6, 188, 198, 201, 374, 403, 577
FspBI	CTAG	2 cut(s)	369, 928
GluI	GCNGC	7 cut(s)	6, 188, 198, 201, 374, 403, 577
HaeIII	GGCC	6 cut(s)	73, 170, 295, 363, 522, 729
HapII	CCGG	2 cut(s)	426, 748
Hin1II	CATG	7 cut(s)	95, 289, 338, 391, 517, 881, 896
HincII	GTYRAC	1 cut(s)	274
HindII	GTYRAC	1 cut(s)	274
HinfI	GANTC	5 cut(s)	33, 64, 275, 719, 757
HpaII	CCGG	2 cut(s)	426, 748
HphI	GGTGA	2 cut(s)	97, 694
Hpy166II	GTNNAC	5 cut(s)	57, 148, 274, 555, 806
Hpy188I	TCNGA	5 cut(s)	32, 84, 228, 260, 756
Hpy188III	TCNNGA	3 cut(s)	123, 631, 782
Hpy8I	GTNNAC	5 cut(s)	57, 148, 274, 555, 806
HpyAV	CCTTC	8 cut(s)	23, 49, 181, 214, 334, 718, 832, 841
HpyCH4III	ACNGT	1 cut(s)	803
HpyCH4V	TGCA	5 cut(s)	143, 197, 299, 376, 402
HpyF10VI	GCNNNNNNNGC	4 cut(s)	519, 540, 573, 680
HpyF3I	CTNAG	3 cut(s)	225, 684, 815
Hsp92II	CATG	7 cut(s)	95, 289, 338, 391, 517, 881, 896
Kzo9I	GATC	5 cut(s)	98, 102, 633, 739, 778
LguI	GCTCTTC	1 cut(s)	473
LmnI	GCTCC	2 cut(s)	125, 488
Lsp1109I	GCAGC	6 cut(s)	199, 209, 212, 360, 414, 588
LweI	GCATC	3 cut(s)	199, 219, 670
MaeI	CTAG	2 cut(s)	369, 928
MalI	GATC	5 cut(s)	100, 104, 635, 741, 780
MboI	GATC	5 cut(s)	98, 102, 633, 739, 778
MboII	GAAGA	7 cut(s)	313, 373, 427, 490, 691, 880, 929
MfeI	CAATTG	1 cut(s)	159
MhlI	GDGCHC	1 cut(s)	485
MluCI	AATT	4 cut(s)	26, 159, 796, 901
MlyI	GAGTC	3 cut(s)	42, 269, 713
MmeI	TCCRAC	1 cut(s)	41
MnlI	CCTC	6 cut(s)	353, 395, 451, 647, 715, 896
MspI	CCGG	2 cut(s)	426, 748
MspR9I	CCNGG	5 cut(s)	69, 426, 594, 748, 749
MunI	CAATTG	1 cut(s)	159
MvaI	CCWGG	2 cut(s)	69, 594
MwoI	GCNNNNNNNGC	4 cut(s)	519, 540, 573, 680
NciI	CCSGG	3 cut(s)	426, 748, 749
NcoI	CCATGG	1 cut(s)	892
NdeII	GATC	5 cut(s)	98, 102, 633, 739, 778
NlaIII	CATG	7 cut(s)	95, 289, 338, 391, 517, 881, 896
NspI	RCATGY	3 cut(s)	95, 289, 881
PceI	AGGCCT	2 cut(s)	170, 363
PciI	ACATGT	3 cut(s)	91, 285, 877
PciSI	GCTCTTC	1 cut(s)	473
PfeI	GAWTC	2 cut(s)	64, 757
PfoI	TCCNGGA	1 cut(s)	424
PkrI	GCNGC	7 cut(s)	7, 189, 199, 202, 375, 404, 578
Ple19I	CGATCG	1 cut(s)	781
PleI	GAGTC	3 cut(s)	41, 269, 713
PpsI	GAGTC	3 cut(s)	41, 269, 713
PscI	ACATGT	3 cut(s)	91, 285, 877
Psp124BI	GAGCTC	1 cut(s)	485
Psp6I	CCWGG	2 cut(s)	67, 592
PspGI	CCWGG	2 cut(s)	67, 592
PspPI	GGNCC	4 cut(s)	71, 552, 666, 727
PstI	CTGCAG	2 cut(s)	199, 378
PvuI	CGATCG	1 cut(s)	781
RsaI	GTAC	2 cut(s)	147, 820
RsaNI	GTAC	2 cut(s)	146, 819
SacI	GAGCTC	1 cut(s)	485
SapI	GCTCTTC	1 cut(s)	473
SatI	GCNGC	7 cut(s)	6, 188, 198, 201, 374, 403, 577
Sau3AI	GATC	5 cut(s)	98, 102, 633, 739, 778
Sau96I	GGNCC	4 cut(s)	71, 552, 666, 727
SchI	GAGTC	3 cut(s)	42, 269, 713
ScrFI	CCNGG	5 cut(s)	69, 426, 594, 748, 749
SduI	GDGCHC	1 cut(s)	485
SetI	ASST	8 cut(s)	270, 407, 485, 707, 737, 824, 851, 868
SfaNI	GCATC	3 cut(s)	199, 219, 670
SfcI	CTRYAG	2 cut(s)	195, 374
SinI	GGWCC	2 cut(s)	552, 666
SmaI	CCCGGG	1 cut(s)	749
SmlI	CTYRAG	1 cut(s)	844
SmoI	CTYRAG	1 cut(s)	844
Sse9I	AATT	4 cut(s)	26, 159, 796, 901
SseBI	AGGCCT	2 cut(s)	170, 363
SsiI	CCGC	1 cut(s)	132
SspMI	CTAG	2 cut(s)	369, 928
SstI	GAGCTC	1 cut(s)	485
StuI	AGGCCT	2 cut(s)	170, 363
StyD4I	CCNGG	5 cut(s)	67, 424, 592, 746, 747
StyI	CCWWGG	2 cut(s)	523, 892
TaaI	ACNGT	1 cut(s)	803
TaqI	TCGA	6 cut(s)	101, 546, 717, 722, 771, 777
TasI	AATT	4 cut(s)	26, 159, 796, 901
TatI	WGTACW	1 cut(s)	145
TfiI	GAWTC	2 cut(s)	64, 757
TscAI	CASTG	1 cut(s)	496
TseI	GCWGC	7 cut(s)	5, 187, 197, 200, 373, 402, 576
TspDTI	ATGAA	2 cut(s)	77, 530
TspMI	CCCGGG	1 cut(s)	747
TspRI	CASTG	1 cut(s)	496
VpaK11BI	GGWCC	2 cut(s)	552, 666
XapI	RAATTY	1 cut(s)	26
XceI	RCATGY	3 cut(s)	95, 289, 881
XmaI	CCCGGG	1 cut(s)	747
XspI	CTAG	2 cut(s)	369, 928

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.