Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000850

Physical Location & Seq

Genomic Coordinates Forward (+)

7477869 .. 7478446

Gene Structure 578 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00005490.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 216 bp

ATGGAAAAGGCTCTCTACAAAATGCTGCTTGCCAACCATCTTAATTGGTGGCTTCTCACAGATGTCGAAAACATCTGTGATGTATCAAAGTTTCCAAAGCGAAGTCCATGGACAAGTCCCGGTGATAATGTGCTCTACAATGCCTCAATCACATGGGGAGACATAGGTCCACTCAGAATGCTCACCAATAAAGGCATCTACCCGGAGGTGAACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006857 GO:0008150 GO:0015833 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0035672 GO:0035673 GO:0042886 GO:0042887 GO:0044425 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OPT

Protein Analysis

71

Amino Acids

8.18

Weight (kDa)

6.53

Isoelectric Point (pI)

49.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000850)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26590 AT5G55930
fragaria_vesca	FvH4_3g42570 FvH4_3g42651 FvH4_3g42660 FvH4_3g42660 FvH4_3g42660 FvH4_3g42660
malus_domestica	MD03G1029800.v1.1 MD03G1029900.v1.1 MD03G1030000.v1.1 MD07G1217200.v1.1 MD11G1034800.v1.1 MD11G1035000.v1.1 MD11G1035100.v1.1
prunus_persica	Prupe.6G026000_v2.0.a1 Prupe.6G026100_v2.0.a1 Prupe.6G026200_v2.0.a1 Prupe.6G026200_v2.0.a1 Prupe.6G026300_v2.0.a1
pyrus_communis	pycom03g02480 pycom03g02500 pycom11g02890 pycom11g02900
rosa_chinensis	RchiOBHm_Chr5g0076291 RchiOBHm_Chr5g0076301 RchiOBHm_Chr5g0076311 RchiOBHm_Chr5g0076621 RchiOBHm_Chr5g0076671
rosa_laevigata	RLG00000036614 RLG00000036615 RLG00000036616 RLG00000036617
rosa_multiflora	Rmu_co8320621.1_g000001 Rmu_co8419599.1_g000001 Rmu_co8455339.1_g000001 Rmu_sc0005961.1_g000002 Rmu_sc0005961.1_g000003 Rmu_sc0013948.1_g000002 Rmu_sc0035770.1_g000001 Rmu_sc0040547.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005490 Rroxscaffold_1G00005550 Rroxscaffold_1G00005560 Rroxscaffold_1G00005570
rosa_rugosa	Rorug05G0446700.1 Rorug05G0447000 Rorug05G0447100 Rorug05G0447200 Rorug05G0447200 Rorug05G0447300
rosa_samantha	Rh5AG501900 Rh5AG502000 Rh5AG502100 Rh5BG523700 Rh5BG523800 Rh5BG523900 Rh5CG547400 Rh5CG547500 Rh5CG547600 Rh5DG535900 Rh5DG536000 Rh5DG536100 Rh7AG436800
rosa_wichuraiana	Rw0G015040 Rw0G015060 Rw5G046590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Alw21I	GWGCWC	1 cut(s)	135
Alw26I	GTCTC	1 cut(s)	153
ApeKI	GCWGC	1 cut(s)	25
AspS9I	GGNCC	1 cut(s)	167
AsuC2I	CCSGG	2 cut(s)	120, 203
AsuHPI	GGTGA	2 cut(s)	134, 175
AvaII	GGWCC	1 cut(s)	167
Bbv12I	GWGCWC	1 cut(s)	135
BbvI	GCAGC	1 cut(s)	12
BccI	CCATC	1 cut(s)	45
BcnI	CCSGG	2 cut(s)	120, 203
BcoDI	GTCTC	1 cut(s)	153
BfaI	CTAG	1 cut(s)	214
BisI	GCNGC	1 cut(s)	26
BlsI	GCNGC	1 cut(s)	27
Bme1390I	CCNGG	2 cut(s)	120, 203
Bme18I	GGWCC	1 cut(s)	167
BmgT120I	GGNCC	1 cut(s)	167
BmrFI	CCNGG	2 cut(s)	120, 203
BmsI	GCATC	1 cut(s)	204
BoxI	GACNNNNGTC	1 cut(s)	165
BpuMI	CCSGG	2 cut(s)	120, 203
BsaJI	CCNNGG	1 cut(s)	107
BseDI	CCNNGG	1 cut(s)	107
BseMII	CTCAG	1 cut(s)	187
BseXI	GCAGC	1 cut(s)	12
BsiHKAI	GWGCWC	1 cut(s)	135
BsiSI	CCGG	2 cut(s)	120, 203
BslFI	GGGAC	1 cut(s)	102
BsmAI	GTCTC	1 cut(s)	153
BsmFI	GGGAC	1 cut(s)	102
BsmI	GAATGC	1 cut(s)	183
Bsp1286I	GDGCHC	1 cut(s)	135
Bsp19I	CCATGG	1 cut(s)	107
BspCNI	CTCAG	1 cut(s)	186
BssECI	CCNNGG	1 cut(s)	107
BssT1I	CCWWGG	1 cut(s)	107
BstC8I	GCNNGC	1 cut(s)	30
BstDEI	CTNAG	1 cut(s)	173
BstDSI	CCRYGG	1 cut(s)	107
BstMAI	GTCTC	1 cut(s)	153
BstPAI	GACNNNNGTC	1 cut(s)	165
BstSCI	CCNGG	2 cut(s)	118, 201
BstV1I	GCAGC	1 cut(s)	12
BtgI	CCRYGG	1 cut(s)	107
Cac8I	GCNNGC	1 cut(s)	30
Cfr13I	GGNCC	1 cut(s)	167
CviAII	CATG	2 cut(s)	108, 153
CviJI	RGCY	2 cut(s)	11, 52
CviKI_1	RGCY	2 cut(s)	11, 52
DdeI	CTNAG	1 cut(s)	173
Eco130I	CCWWGG	1 cut(s)	107
Eco47I	GGWCC	1 cut(s)	167
EcoT14I	CCWWGG	1 cut(s)	107
ErhI	CCWWGG	1 cut(s)	107
FaeI	CATG	2 cut(s)	111, 156
FaiI	YATR	3 cut(s)	109, 154, 164
FaqI	GGGAC	1 cut(s)	102
FatI	CATG	2 cut(s)	107, 152
Fnu4HI	GCNGC	1 cut(s)	26
Fsp4HI	GCNGC	1 cut(s)	26
FspBI	CTAG	1 cut(s)	214
GluI	GCNGC	1 cut(s)	26
HapII	CCGG	2 cut(s)	120, 203
Hin1II	CATG	2 cut(s)	111, 156
HpaII	CCGG	2 cut(s)	120, 203
HphI	GGTGA	2 cut(s)	134, 175
Hpy166II	GTNNAC	2 cut(s)	170, 211
Hpy188I	TCNGA	1 cut(s)	176
Hpy8I	GTNNAC	2 cut(s)	170, 211
HpyF3I	CTNAG	1 cut(s)	173
Hsp92II	CATG	2 cut(s)	111, 156
LpnPI	CCDG	1 cut(s)	133
Lsp1109I	GCAGC	1 cut(s)	12
LweI	GCATC	1 cut(s)	204
MaeI	CTAG	1 cut(s)	214
MhlI	GDGCHC	1 cut(s)	135
MluCI	AATT	1 cut(s)	43
MnlI	CCTC	2 cut(s)	154, 199
MseI	TTAA	1 cut(s)	42
MspI	CCGG	2 cut(s)	120, 203
MspR9I	CCNGG	2 cut(s)	120, 203
Mva1269I	GAATGC	1 cut(s)	183
NciI	CCSGG	2 cut(s)	120, 203
NcoI	CCATGG	1 cut(s)	107
NlaIII	CATG	2 cut(s)	111, 156
PctI	GAATGC	1 cut(s)	183
PkrI	GCNGC	1 cut(s)	27
PshAI	GACNNNNGTC	1 cut(s)	165
PspPI	GGNCC	1 cut(s)	167
SaqAI	TTAA	1 cut(s)	42
SatI	GCNGC	1 cut(s)	26
Sau96I	GGNCC	1 cut(s)	167
ScrFI	CCNGG	2 cut(s)	120, 203
SduI	GDGCHC	1 cut(s)	135
SetI	ASST	2 cut(s)	169, 210
SfaNI	GCATC	1 cut(s)	204
SgeI	CNNG	6 cut(s)	41, 120, 126, 131, 132, 165
SinI	GGWCC	1 cut(s)	167
Sse9I	AATT	1 cut(s)	43
SspMI	CTAG	1 cut(s)	214
StyD4I	CCNGG	2 cut(s)	118, 201
StyI	CCWWGG	1 cut(s)	107
TaqI	TCGA	1 cut(s)	66
TasI	AATT	1 cut(s)	43
Tru1I	TTAA	1 cut(s)	42
Tru9I	TTAA	1 cut(s)	42
TseI	GCWGC	1 cut(s)	25
VpaK11BI	GGWCC	1 cut(s)	167
XspI	CTAG	1 cut(s)	214

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.