Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0000850

Physical Location & Seq

Genomic Coordinates Forward (+)

7531134 .. 7535819

Gene Structure 4686 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00005570.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2196 bp

ATGACAGTCTCTGTCGAAGGTCCAGACTCTCAAGCAACTATTCCTGGTGGGACAAGGATCGACGTCCTTGATGATGAGTTCAACGACAGCCCAATTGAGCAGGTGAGGCTAACAGTTCCGATCACCGACGACCCTTCAGTTCCCGCCTTAACCTTTCGTACGTGGGTTCTAGGCCTTTTGTCATGCTGCACTCTTGCCTTTTTGAACCAGTTCTTTGGTTACCGCCAAAACCAGCTCTACATTTCTTCAGTCTCAGCACAAATCCTCGTCCTCCCTCTCGGAAAACTGATGGCTAAAACTCTCCCAACAAAACAATTCCGAGTTATGGGATGGACATTTTCGTTCAACCCCGGACCTTTCAACTTGAAAGAGCATGTGTTGATCACCATCTTTGCGAATTCAGGATCAAATAGTGTTTATGCAGTTGGCATTATCACTATTGTGAAGGCTTTCTACCGCAGAAGCATGCATCCTATGGCAGCCTTCTTGTTAGCCCAAAGCACTCAATTGCTTGGATATGGGGCGCTTCATGAATGGGAAATGAGACCAAAGGGAGGCCGTACTAGGCTGCAGTACTTCAGCTTAGTATTTGTATGCAGCTTCGCTTATTATATTATTCCAAGTTTTTTCTTCCCCTCCATAGGCGCTCTCTCCTTTGTTTGTTGGATATGGAAGGACTCCGTCACCGCCCAACAGATTGGTTCCGGCCTCAATGGCCTTGGCATTGGCTCGTTTGGCCTTGATTGGTCAACTGTTGCTAGCTTCTTGAAGAGCCCATTAGCCACACCCGGTTTTGTCTTCATGAACATGTTGGCTGGTTTTGTCTTCATTTTCTACGTTCTTACCCCCATTTTTTATTGGTCCAATGTAAAAGATGCCAAGAAGTTTCCCTTCTTTTCTTCTTCTACTTTCGACTCCACTGGCAAACGCTATAATGTTTCCCGAGTTCTGGACCAGAAAACTTTCGATATTAATTTGAAAGAGTATAACAGTTACAGTAAACTCCATCTCTCTATGTACTTTGCCTCGAGTTACGGGTGGAGCTTTGCTGGTCTGACAGCAACTATTTCACATGTTGCACTCTTCCATGGAAAAGACATCTGGGATATGTGGAAAAAGACTTCTACCGCAGCGAAAGATCAGCTTGGGGACATCCACACACGGTTGATGAAGAAGAACTACGAGGCAGTCCCACAATGGTGGTTTCACATCATGCTTGTTTTAATGGTTGGCCTTTCCATCTGGGTCTGTGAAGGTTTTGGGAAACAGCTCCAACTTCCATGGTGGGGAGTCTTACTGGCTTGTGCCATTGCACTAACTTTCACCTTACCCATTGGCATTATTCAAGCCACAACAAACATGCAACCGGGGCTCAATGTGATCACAGAGTTGGTTATTGGGTATCTTTATCCTGGGAAGCCTCTTGCCAATGTGACTTTCAAAACATATGGCTATATCAGCATGTCACAAGCACTCATGTTTCTCGGTGACTTCAAATTAGGTCACTATATGAAGATCCCTCCCAAGTCCATGTTTATTGCGCAGTTAGCTGGAACACTGGTCGCTTCAAGTACCTTTTTCAGCACATCCTGGTGGCTTCTCAACACTGTTGAGAACATCTGTGATCCATCAAAACTGCCAGAGGGAAGTCCATGGACATGTCCTAGTGATGAGGTCTTCTACAATGCCTCAATAATATGGGGAGTTATAGGCCCTCTCAGAATGTTCACTAAGCATGGAAACTACCCGGAGATGAACTGGTTCTTCCTACTTGGTTTACTTGCACCTATACCAGTTTGGTTCCTAGCGCGCAAATTCCCCAAGCTAGAGTGGATTAAGCTCATAAACATGCCTGTCATCATTGGAACCACAGCAGTCATGCCACCAGCTAAAGCTGTCCACTACTTGATGTGGTTCACAGTTGGAATTTTCTTTAGCTTCTATGTTTATCGACAACACAGGGCATGGTGGGCTAGGCATAACTACATCCTATCAGCTGCTTTGGATGCCGGTGTGGCCTTCACGGCAGTTCTTGTGTATTTCACCCTTCAGAGTAATGGTATTAATGGTCCAAAATGGTGGGGTCAGGACAGCACTGATCATTGTCCGTTGGCCAAGTGCCCCACAGCTCCAGGACTATGGCAAATTGGTATACATGAAGCTGTACAGTTCATTATTTTGATTTACTCTGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006857 GO:0008150 GO:0015833 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0035672 GO:0035673 GO:0042886 GO:0042887 GO:0044425 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OPT

Protein Analysis

731

Amino Acids

82.31

Weight (kDa)

9.11

Isoelectric Point (pI)

35.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OPT	PF03169	50 - 176	1.3e-29	OPT oligopeptide transporter protein
OPT	PF03169	187 - 681	1e-113	OPT oligopeptide transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000850)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26590 AT5G55930
fragaria_vesca	FvH4_3g42570 FvH4_3g42651 FvH4_3g42660 FvH4_3g42660 FvH4_3g42660 FvH4_3g42660
malus_domestica	MD03G1029800.v1.1 MD03G1029900.v1.1 MD03G1030000.v1.1 MD07G1217200.v1.1 MD11G1034800.v1.1 MD11G1035000.v1.1 MD11G1035100.v1.1
prunus_persica	Prupe.6G026000_v2.0.a1 Prupe.6G026100_v2.0.a1 Prupe.6G026200_v2.0.a1 Prupe.6G026200_v2.0.a1 Prupe.6G026300_v2.0.a1
pyrus_communis	pycom03g02480 pycom03g02500 pycom11g02890 pycom11g02900
rosa_chinensis	RchiOBHm_Chr5g0076291 RchiOBHm_Chr5g0076301 RchiOBHm_Chr5g0076311 RchiOBHm_Chr5g0076621 RchiOBHm_Chr5g0076671
rosa_laevigata	RLG00000036614 RLG00000036615 RLG00000036616 RLG00000036617
rosa_multiflora	Rmu_co8320621.1_g000001 Rmu_co8419599.1_g000001 Rmu_co8455339.1_g000001 Rmu_sc0005961.1_g000002 Rmu_sc0005961.1_g000003 Rmu_sc0013948.1_g000002 Rmu_sc0035770.1_g000001 Rmu_sc0040547.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005490 Rroxscaffold_1G00005550 Rroxscaffold_1G00005560 Rroxscaffold_1G00005570
rosa_rugosa	Rorug05G0446700.1 Rorug05G0447000 Rorug05G0447100 Rorug05G0447200 Rorug05G0447200 Rorug05G0447300
rosa_samantha	Rh5AG501900 Rh5AG502000 Rh5AG502100 Rh5BG523700 Rh5BG523800 Rh5BG523900 Rh5CG547400 Rh5CG547500 Rh5CG547600 Rh5DG535900 Rh5DG536000 Rh5DG536100 Rh7AG436800
rosa_wichuraiana	Rw0G015040 Rw0G015060 Rw5G046590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	91
AatII	GACGTC	1 cut(s)	66
Acc16I	TGCGCA	1 cut(s)	1542
Acc36I	ACCTGC	1 cut(s)	91
AccI	GTMKAC	1 cut(s)	2152
AccII	CGCG	1 cut(s)	1810
AciI	CCGC	5 cut(s)	144, 223, 457, 687, 1128
AclWI	GGATC	4 cut(s)	65, 412, 1510, 1619
AcoI	YGGCCR	1 cut(s)	2112
AcsI	RAATTY	3 cut(s)	397, 1814, 1926
AcuI	CTGAAG	4 cut(s)	120, 231, 562, 2033
AcyI	GRCGYC	1 cut(s)	63
AfaI	GTAC	6 cut(s)	160, 562, 575, 1019, 1573, 2166
AfiI	CCNNNNNNNGG	5 cut(s)	325, 554, 641, 949, 1286
AflIII	ACRYGT	3 cut(s)	807, 1072, 1658
AjnI	CCWGG	4 cut(s)	43, 1411, 1589, 2131
AjuI	GAANNNNNNNTTGG	2 cut(s)	1421, 1453
AleI	CACNNNNGTG	2 cut(s)	440, 1198
Alw26I	GTCTC	3 cut(s)	13, 256, 538
AlwI	GGATC	4 cut(s)	65, 412, 1510, 1619
AlwNI	CAGNNNCTG	1 cut(s)	11
Ama87I	CYCGRG	2 cut(s)	942, 1027
AoxI	GGCC	9 cut(s)	172, 556, 706, 715, 736, 1231, 1711, 2016, 2112
ApeKI	GCWGC	6 cut(s)	186, 479, 568, 597, 1130, 1997
ApoI	RAATTY	3 cut(s)	397, 1814, 1926
AseI	ATTAAT	2 cut(s)	972, 2064
Asp700I	GAANNNNTTC	4 cut(s)	209, 449, 962, 1760
AspLEI	GCGC	5 cut(s)	526, 647, 1543, 1810, 1812
AspS9I	GGNCC	6 cut(s)	20, 353, 861, 952, 1712, 2069
AsuC2I	CCSGG	4 cut(s)	351, 789, 1368, 1748
AsuHPI	GGTGA	7 cut(s)	115, 115, 376, 676, 1315, 1499, 2035
AsuNHI	GCTAGC	1 cut(s)	758
AvaI	CYCGRG	2 cut(s)	942, 1027
AvaII	GGWCC	5 cut(s)	20, 353, 861, 952, 2069
BaeGI	GKGCMC	1 cut(s)	2123
BalI	TGGCCA	1 cut(s)	2114
BanII	GRGCYC	2 cut(s)	776, 1374
BarI	GAAGNNNNNNTAC	4 cut(s)	437, 469, 1163, 1195
BbsI	GAAGAC	3 cut(s)	790, 817, 1669
BbvI	GCAGC	6 cut(s)	173, 491, 555, 609, 1142, 1984
BccI	CCATC	6 cut(s)	283, 324, 395, 1014, 1247, 1636
BceAI	ACGGC	2 cut(s)	543, 2040
BciT130I	CCWGG	4 cut(s)	45, 1413, 1591, 2133
BclI	TGATCA	3 cut(s)	381, 1380, 2098
BcnI	CCSGG	4 cut(s)	351, 789, 1368, 1748
BcoDI	GTCTC	3 cut(s)	13, 256, 538
BfaI	CTAG	7 cut(s)	170, 564, 759, 1665, 1805, 1826, 1974
BfmI	CTRYAG	1 cut(s)	569
BfoI	RGCGCY	2 cut(s)	527, 648
BfuAI	ACCTGC	1 cut(s)	91
BglI	GCCNNNNNGGC	3 cut(s)	714, 2015, 2024
BisI	GCNGC	6 cut(s)	187, 480, 569, 598, 1131, 1998
BlsI	GCNGC	6 cut(s)	188, 481, 570, 599, 1132, 1999
BmcAI	AGTACT	1 cut(s)	575
Bme1390I	CCNGG	8 cut(s)	45, 351, 789, 1368, 1413, 1591, 1748, 2133
Bme18I	GGWCC	5 cut(s)	20, 353, 861, 952, 2069
BmeT110I	CYCGRG	2 cut(s)	942, 1027
BmgT120I	GGNCC	6 cut(s)	20, 353, 861, 952, 1712, 2069
BmiI	GGNNCC	3 cut(s)	703, 1802, 1867
BmrFI	CCNGG	8 cut(s)	45, 351, 789, 1368, 1413, 1591, 1748, 2133
BmsI	GCATC	3 cut(s)	478, 865, 1996
BmtI	GCTAGC	1 cut(s)	762
BpiI	GAAGAC	3 cut(s)	790, 817, 1669
BpmI	CTGGAG	1 cut(s)	2115
BpuEI	CTTGAG	1 cut(s)	15
BpuMI	CCSGG	4 cut(s)	351, 789, 1368, 1748
BsaAI	YACGTR	1 cut(s)	162
BsaBI	GATNNNNATC	1 cut(s)	386
BsaHI	GRCGYC	1 cut(s)	63
BsaI	GGTCTC	1 cut(s)	538
BsaJI	CCNNGG	7 cut(s)	349, 718, 1087, 1280, 1367, 1412, 1652
Bsc4I	CCNNNNNNNGG	5 cut(s)	325, 554, 641, 949, 1286
Bse118I	RCCGGY	1 cut(s)	2009
Bse1I	ACTGG	6 cut(s)	208, 925, 1302, 1563, 1763, 1793
Bse3DI	GCAATG	1 cut(s)	1308
Bse8I	GATNNNNATC	1 cut(s)	386
BseBI	CCWGG	4 cut(s)	45, 1413, 1591, 2133
BseDI	CCNNGG	7 cut(s)	349, 718, 1087, 1280, 1367, 1412, 1652
BseGI	GGATG	6 cut(s)	335, 469, 1152, 1586, 1986, 2011
BseJI	GATNNNNATC	1 cut(s)	386
BseLI	CCNNNNNNNGG	5 cut(s)	325, 554, 641, 949, 1286
BseMI	GCAATG	1 cut(s)	1308
BseMII	CTCAG	2 cut(s)	267, 1732
BseNI	ACTGG	6 cut(s)	208, 925, 1302, 1563, 1763, 1793
BsePI	GCGCGC	1 cut(s)	1808
BseSI	GKGCMC	1 cut(s)	2123
BseXI	GCAGC	6 cut(s)	173, 491, 555, 609, 1142, 1984
BsgI	GTGCAG	1 cut(s)	172
Bsh1236I	CGCG	1 cut(s)	1810
BshFI	GGCC	9 cut(s)	174, 558, 708, 717, 738, 1233, 1713, 2018, 2114
BsiHKCI	CYCGRG	2 cut(s)	942, 1027
BsiSI	CCGG	6 cut(s)	351, 705, 789, 1367, 1748, 2010
BsiWI	CGTACG	1 cut(s)	158
BslFI	GGGAC	3 cut(s)	64, 1163, 1175
BslI	CCNNNNNNNGG	5 cut(s)	325, 554, 641, 949, 1286
BsmAI	GTCTC	3 cut(s)	13, 256, 538
BsmFI	GGGAC	3 cut(s)	64, 1163, 1175
BsnI	GGCC	9 cut(s)	174, 558, 708, 717, 738, 1233, 1713, 2018, 2114
Bso31I	GGTCTC	1 cut(s)	538
BsoBI	CYCGRG	2 cut(s)	942, 1027
Bsp1286I	GDGCHC	3 cut(s)	776, 1374, 2123
Bsp1407I	TGTACA	1 cut(s)	2164
Bsp143I	GATC	9 cut(s)	57, 120, 381, 404, 1138, 1380, 1515, 1624, 2098
Bsp19I	CCATGG	3 cut(s)	1087, 1280, 1652
BspACI	CCGC	5 cut(s)	144, 223, 457, 687, 1128
BspANI	GGCC	9 cut(s)	174, 558, 708, 717, 738, 1233, 1713, 2018, 2114
BspCNI	CTCAG	2 cut(s)	266, 1731
BspFNI	CGCG	1 cut(s)	1810
BspHI	TCATGA	2 cut(s)	529, 801
BspLI	GGNNCC	3 cut(s)	703, 1802, 1867
BspMAI	CTGCAG	1 cut(s)	573
BspMI	ACCTGC	1 cut(s)	91
BspOI	GCTAGC	1 cut(s)	762
BspPI	GGATC	4 cut(s)	65, 412, 1510, 1619
BspQI	GCTCTTC	1 cut(s)	764
BspTNI	GGTCTC	1 cut(s)	538
BsrDI	GCAATG	1 cut(s)	1308
BsrFI	RCCGGY	1 cut(s)	2009
BsrGI	TGTACA	1 cut(s)	2164
BsrI	ACTGG	6 cut(s)	208, 925, 1302, 1563, 1763, 1793
BssAI	RCCGGY	1 cut(s)	2009
BssECI	CCNNGG	7 cut(s)	349, 718, 1087, 1280, 1367, 1412, 1652
BssHII	GCGCGC	1 cut(s)	1808
BssMI	GATC	9 cut(s)	57, 120, 381, 404, 1138, 1380, 1515, 1624, 2098
BssNAI	GTATAC	1 cut(s)	2153
BssNI	GRCGYC	1 cut(s)	63
BssT1I	CCWWGG	4 cut(s)	718, 1087, 1280, 1652
Bst1107I	GTATAC	1 cut(s)	2153
Bst2UI	CCWGG	4 cut(s)	45, 1413, 1591, 2133
Bst4CI	ACNGT	9 cut(s)	7, 115, 754, 992, 998, 1164, 1609, 1921, 2169
Bst6I	CTCTTC	2 cut(s)	764, 1088
BstACI	GRCGYC	1 cut(s)	63
BstAUI	TGTACA	1 cut(s)	2164
BstBAI	YACGTR	1 cut(s)	162
BstC8I	GCNNGC	3 cut(s)	467, 760, 1810
BstDEI	CTNAG	4 cut(s)	253, 583, 1718, 1731
BstDSI	CCRYGG	3 cut(s)	1087, 1280, 1652
BstEII	GGTNACC	1 cut(s)	218
BstF5I	GGATG	6 cut(s)	335, 469, 1152, 1586, 1986, 2011
BstFNI	CGCG	1 cut(s)	1810
BstH2I	RGCGCY	2 cut(s)	527, 648
BstHHI	GCGC	5 cut(s)	526, 647, 1543, 1810, 1812
BstKTI	GATC	9 cut(s)	60, 123, 384, 407, 1141, 1383, 1518, 1627, 2101
BstMAI	GTCTC	3 cut(s)	13, 256, 538
BstMBI	GATC	9 cut(s)	57, 120, 381, 404, 1138, 1380, 1515, 1624, 2098
BstNI	CCWGG	4 cut(s)	45, 1413, 1591, 2133
BstNSI	RCATGY	8 cut(s)	377, 469, 811, 1076, 1363, 1465, 1662, 1852
BstPI	GGTNACC	1 cut(s)	218
BstSCI	CCNGG	8 cut(s)	43, 349, 787, 1366, 1411, 1589, 1746, 2131
BstSFI	CTRYAG	1 cut(s)	569
BstSLI	GKGCMC	1 cut(s)	2123
BstUI	CGCG	1 cut(s)	1810
BstV1I	GCAGC	6 cut(s)	173, 491, 555, 609, 1142, 1984
BstV2I	GAAGAC	3 cut(s)	790, 817, 1669
BstX2I	RGATCY	1 cut(s)	1515
BstXI	CCANNNNNNTGG	5 cut(s)	215, 698, 1200, 2079, 2139
BstYI	RGATCY	1 cut(s)	1515
BstZ17I	GTATAC	1 cut(s)	2153
BsuRI	GGCC	9 cut(s)	174, 558, 708, 717, 738, 1233, 1713, 2018, 2114
BtgI	CCRYGG	3 cut(s)	1087, 1280, 1652
BtsCI	GGATG	6 cut(s)	335, 469, 1152, 1586, 1986, 2011
BtsIMutI	CAGTG	4 cut(s)	918, 1556, 1605, 2094
BveI	ACCTGC	1 cut(s)	91
Cac8I	GCNNGC	3 cut(s)	467, 760, 1810
CaiI	CAGNNNCTG	1 cut(s)	11
CciI	TCATGA	2 cut(s)	529, 801
CfoI	GCGC	5 cut(s)	526, 647, 1543, 1810, 1812
Cfr10I	RCCGGY	1 cut(s)	2009
Cfr13I	GGNCC	6 cut(s)	20, 353, 861, 952, 1712, 2069
Csp6I	GTAC	6 cut(s)	159, 561, 574, 1018, 1572, 2165
CviQI	GTAC	6 cut(s)	159, 561, 574, 1018, 1572, 2165
DdeI	CTNAG	4 cut(s)	253, 583, 1718, 1731
DpnI	GATC	9 cut(s)	59, 122, 383, 406, 1140, 1382, 1517, 1626, 2100
DpnII	GATC	9 cut(s)	57, 120, 381, 404, 1138, 1380, 1515, 1624, 2098
EaeI	YGGCCR	1 cut(s)	2112
Eam1104I	CTCTTC	2 cut(s)	764, 1088
EarI	CTCTTC	2 cut(s)	764, 1088
Eco130I	CCWWGG	4 cut(s)	718, 1087, 1280, 1652
Eco147I	AGGCCT	1 cut(s)	174
Eco24I	GRGCYC	2 cut(s)	776, 1374
Eco31I	GGTCTC	1 cut(s)	538
Eco47I	GGWCC	5 cut(s)	20, 353, 861, 952, 2069
Eco57I	CTGAAG	4 cut(s)	120, 231, 562, 2033
Eco88I	CYCGRG	2 cut(s)	942, 1027
Eco91I	GGTNACC	1 cut(s)	218
EcoO109I	RGGNCCY	1 cut(s)	1712
EcoO65I	GGTNACC	1 cut(s)	218
EcoRI	GAATTC	1 cut(s)	397
EcoRII	CCWGG	4 cut(s)	43, 1411, 1589, 2131
EcoT14I	CCWWGG	4 cut(s)	718, 1087, 1280, 1652
EcoT22I	ATGCAT	1 cut(s)	471
EcoT38I	GRGCYC	2 cut(s)	776, 1374
ErhI	CCWWGG	4 cut(s)	718, 1087, 1280, 1652
FalI	AAGNNNNNCTT	4 cut(s)	875, 907, 1128, 1160
FaqI	GGGAC	3 cut(s)	64, 1163, 1175
FauI	CCCGC	1 cut(s)	151
FauNDI	CATATG	1 cut(s)	1447
FbaI	TGATCA	3 cut(s)	381, 1380, 2098
FblI	GTMKAC	1 cut(s)	2152
Fnu4HI	GCNGC	6 cut(s)	187, 480, 569, 598, 1131, 1998
FokI	GGATG	6 cut(s)	342, 456, 1139, 1573, 1973, 2018
FriOI	GRGCYC	2 cut(s)	776, 1374
Fsp4HI	GCNGC	6 cut(s)	187, 480, 569, 598, 1131, 1998
FspBI	CTAG	7 cut(s)	170, 564, 759, 1665, 1805, 1826, 1974
FspI	TGCGCA	1 cut(s)	1542
GlaI	GCGC	5 cut(s)	525, 646, 1542, 1809, 1811
GluI	GCNGC	6 cut(s)	187, 480, 569, 598, 1131, 1998
GsuI	CTGGAG	1 cut(s)	2115
HaeII	RGCGCY	2 cut(s)	527, 648
HaeIII	GGCC	9 cut(s)	174, 558, 708, 717, 738, 1233, 1713, 2018, 2114
HapII	CCGG	6 cut(s)	351, 705, 789, 1367, 1748, 2010
HhaI	GCGC	5 cut(s)	526, 647, 1543, 1810, 1812
Hin1I	GRCGYC	1 cut(s)	63
Hin6I	GCGC	5 cut(s)	524, 645, 1541, 1808, 1810
HinP1I	GCGC	5 cut(s)	524, 645, 1541, 1808, 1810
HincII	GTYRAC	1 cut(s)	750
HindII	GTYRAC	1 cut(s)	750
HinfI	GANTC	4 cut(s)	26, 677, 914, 1290
HpaII	CCGG	6 cut(s)	351, 705, 789, 1367, 1748, 2010
HphI	GGTGA	7 cut(s)	115, 115, 376, 676, 1315, 1499, 2035
Hpy166II	GTNNAC	7 cut(s)	750, 1001, 1728, 1778, 1900, 1917, 2153
Hpy188I	TCNGA	6 cut(s)	120, 281, 320, 1056, 1721, 2052
Hpy188III	TCNNGA	8 cut(s)	23, 402, 530, 766, 802, 942, 950, 2087
Hpy8I	GTNNAC	7 cut(s)	750, 1001, 1728, 1778, 1900, 1917, 2153
Hpy99I	CGWCG	2 cut(s)	65, 131
HpyAV	CCTTC	9 cut(s)	11, 144, 439, 493, 667, 901, 1247, 2029, 2057
HpyCH4III	ACNGT	9 cut(s)	7, 115, 754, 992, 998, 1164, 1609, 1921, 2169
HpyCH4IV	ACGT	3 cut(s)	63, 161, 837
HpyCH4V	TGCA	9 cut(s)	189, 422, 469, 571, 597, 1079, 1313, 1363, 1784
HpyF3I	CTNAG	4 cut(s)	253, 583, 1718, 1731
HpySE526I	ACGT	3 cut(s)	63, 161, 837
Hsp92I	GRCGYC	1 cut(s)	63
HspAI	GCGC	5 cut(s)	524, 645, 1541, 1808, 1810
Ksp22I	TGATCA	3 cut(s)	381, 1380, 2098
Kzo9I	GATC	9 cut(s)	57, 120, 381, 404, 1138, 1380, 1515, 1624, 2098
LguI	GCTCTTC	1 cut(s)	764
LmnI	GCTCC	3 cut(s)	1041, 1275, 2134
Lsp1109I	GCAGC	6 cut(s)	173, 491, 555, 609, 1142, 1984
LweI	GCATC	3 cut(s)	478, 865, 1996
MaeI	CTAG	7 cut(s)	170, 564, 759, 1665, 1805, 1826, 1974
MaeII	ACGT	3 cut(s)	63, 161, 837
MaeIII	GTNAC	8 cut(s)	218, 682, 992, 1031, 1432, 1464, 1487, 1502
MalI	GATC	9 cut(s)	59, 122, 383, 406, 1140, 1382, 1517, 1626, 2100
MboI	GATC	9 cut(s)	57, 120, 381, 404, 1138, 1380, 1515, 1624, 2098
MfeI	CAATTG	2 cut(s)	93, 506
MflI	RGATCY	1 cut(s)	1515
MhlI	GDGCHC	3 cut(s)	776, 1374, 2123
MlsI	TGGCCA	1 cut(s)	2114
MluCI	AATT	9 cut(s)	93, 314, 397, 506, 973, 1496, 1814, 1926, 2145
MluNI	TGGCCA	1 cut(s)	2114
MlyI	GAGTC	4 cut(s)	20, 671, 908, 1299
MmeI	TCCRAC	3 cut(s)	644, 1297, 1903
Mox20I	TGGCCA	1 cut(s)	2114
Mph1103I	ATGCAT	1 cut(s)	471
MroXI	GAANNNNTTC	4 cut(s)	209, 449, 962, 1760
MscI	TGGCCA	1 cut(s)	2114
MseI	TTAA	5 cut(s)	149, 972, 1223, 1836, 2064
MslI	CAYNNNNRTG	6 cut(s)	440, 806, 1198, 1591, 1657, 1847
Msp20I	TGGCCA	1 cut(s)	2114
MspA1I	CMGCKG	1 cut(s)	1997
MspI	CCGG	6 cut(s)	351, 705, 789, 1367, 1748, 2010
MspR9I	CCNGG	8 cut(s)	45, 351, 789, 1368, 1413, 1591, 1748, 2133
MunI	CAATTG	2 cut(s)	93, 506
MvaI	CCWGG	4 cut(s)	45, 1413, 1591, 2133
MvnI	CGCG	1 cut(s)	1810
NciI	CCSGG	4 cut(s)	351, 789, 1368, 1748
NcoI	CCATGG	3 cut(s)	1087, 1280, 1652
NdeI	CATATG	1 cut(s)	1447
NdeII	GATC	9 cut(s)	57, 120, 381, 404, 1138, 1380, 1515, 1624, 2098
NheI	GCTAGC	1 cut(s)	758
NlaIV	GGNNCC	3 cut(s)	703, 1802, 1867
NmuCI	GTSAC	5 cut(s)	682, 1432, 1464, 1487, 1502
NsbI	TGCGCA	1 cut(s)	1542
NsiI	ATGCAT	1 cut(s)	471
NspI	RCATGY	8 cut(s)	377, 469, 811, 1076, 1363, 1465, 1662, 1852
OliI	CACNNNNGTG	2 cut(s)	440, 1198
PaeI	GCATGC	1 cut(s)	469
PaeR7I	CTCGAG	1 cut(s)	1027
PagI	TCATGA	2 cut(s)	529, 801
PaqCI	CACCTGC	1 cut(s)	91
PauI	GCGCGC	1 cut(s)	1808
PceI	AGGCCT	1 cut(s)	174
PciI	ACATGT	3 cut(s)	807, 1072, 1658
PciSI	GCTCTTC	1 cut(s)	764
PdmI	GAANNNNTTC	4 cut(s)	209, 449, 962, 1760
Pfl23II	CGTACG	1 cut(s)	158
PflFI	GACNNNGTC	1 cut(s)	680
PfoI	TCCNGGA	1 cut(s)	2131
PkrI	GCNGC	6 cut(s)	188, 481, 570, 599, 1132, 1999
PleI	GAGTC	4 cut(s)	20, 671, 908, 1298
PpsI	GAGTC	4 cut(s)	20, 671, 908, 1298
Ppu21I	YACGTR	1 cut(s)	162
PscI	ACATGT	3 cut(s)	807, 1072, 1658
PshBI	ATTAAT	2 cut(s)	972, 2064
Psp6I	CCWGG	4 cut(s)	43, 1411, 1589, 2131
PspEI	GGTNACC	1 cut(s)	218
PspGI	CCWGG	4 cut(s)	43, 1411, 1589, 2131
PspLI	CGTACG	1 cut(s)	158
PspN4I	GGNNCC	3 cut(s)	703, 1802, 1867
PspPI	GGNCC	6 cut(s)	20, 353, 861, 952, 1712, 2069
PspXI	VCTCGAGB	1 cut(s)	1027
PstI	CTGCAG	1 cut(s)	573
PstNI	CAGNNNCTG	1 cut(s)	11
PsuI	RGATCY	1 cut(s)	1515
PsyI	GACNNNGTC	1 cut(s)	680
PteI	GCGCGC	1 cut(s)	1808
PvuII	CAGCTG	1 cut(s)	1997
RsaI	GTAC	6 cut(s)	160, 562, 575, 1019, 1573, 2166
RsaNI	GTAC	6 cut(s)	159, 561, 574, 1018, 1572, 2165
RseI	CAYNNNNRTG	6 cut(s)	440, 806, 1198, 1591, 1657, 1847
SapI	GCTCTTC	1 cut(s)	764
SaqAI	TTAA	5 cut(s)	149, 972, 1223, 1836, 2064
SatI	GCNGC	6 cut(s)	187, 480, 569, 598, 1131, 1998
Sau3AI	GATC	9 cut(s)	57, 120, 381, 404, 1138, 1380, 1515, 1624, 2098
Sau96I	GGNCC	6 cut(s)	20, 353, 861, 952, 1712, 2069
ScaI	AGTACT	1 cut(s)	575
SchI	GAGTC	4 cut(s)	20, 671, 908, 1299
ScrFI	CCNGG	8 cut(s)	45, 351, 789, 1368, 1413, 1591, 1748, 2133
SduI	GDGCHC	3 cut(s)	776, 1374, 2123
SfaNI	GCATC	3 cut(s)	478, 865, 1996
SfcI	CTRYAG	1 cut(s)	569
SfiI	GGCCNNNNNGGCC	1 cut(s)	714
Sfr274I	CTCGAG	1 cut(s)	1027
SinI	GGWCC	5 cut(s)	20, 353, 861, 952, 2069
SlaI	CTCGAG	1 cut(s)	1027
SmiMI	CAYNNNNRTG	6 cut(s)	440, 806, 1198, 1591, 1657, 1847
SmlI	CTYRAG	2 cut(s)	30, 1027
SmoI	CTYRAG	2 cut(s)	30, 1027
SphI	GCATGC	1 cut(s)	469
Sse9I	AATT	9 cut(s)	93, 314, 397, 506, 973, 1496, 1814, 1926, 2145
SseBI	AGGCCT	1 cut(s)	174
SsiI	CCGC	5 cut(s)	144, 223, 457, 687, 1128
SspMI	CTAG	7 cut(s)	170, 564, 759, 1665, 1805, 1826, 1974
StuI	AGGCCT	1 cut(s)	174
StyD4I	CCNGG	8 cut(s)	43, 349, 787, 1366, 1411, 1589, 1746, 2131
StyI	CCWWGG	4 cut(s)	718, 1087, 1280, 1652
TaaI	ACNGT	9 cut(s)	7, 115, 754, 992, 998, 1164, 1609, 1921, 2169
TaiI	ACGT	3 cut(s)	66, 164, 840
TaqI	TCGA	6 cut(s)	15, 60, 912, 966, 1028, 1951
TasI	AATT	9 cut(s)	93, 314, 397, 506, 973, 1496, 1814, 1926, 2145
TatI	WGTACW	3 cut(s)	573, 1017, 2164
Tru1I	TTAA	5 cut(s)	149, 972, 1223, 1836, 2064
Tru9I	TTAA	5 cut(s)	149, 972, 1223, 1836, 2064
TscAI	CASTG	4 cut(s)	925, 1563, 1612, 2101
TseFI	GTSAC	5 cut(s)	682, 1432, 1464, 1487, 1502
TseI	GCWGC	6 cut(s)	186, 479, 568, 597, 1130, 1997
Tsp45I	GTSAC	5 cut(s)	682, 1432, 1464, 1487, 1502
TspGWI	ACGGA	2 cut(s)	670, 2097
TspRI	CASTG	4 cut(s)	925, 1563, 1612, 2101
Tth111I	GACNNNGTC	1 cut(s)	680
VpaK11BI	GGWCC	5 cut(s)	20, 353, 861, 952, 2069
VspI	ATTAAT	2 cut(s)	972, 2064
XapI	RAATTY	3 cut(s)	397, 1814, 1926
XceI	RCATGY	8 cut(s)	377, 469, 811, 1076, 1363, 1465, 1662, 1852
XhoI	CTCGAG	1 cut(s)	1027
XmiI	GTMKAC	1 cut(s)	2152
XmnI	GAANNNNTTC	4 cut(s)	209, 449, 962, 1760
XspI	CTAG	7 cut(s)	170, 564, 759, 1665, 1805, 1826, 1974
ZraI	GACGTC	1 cut(s)	64
ZrmI	AGTACT	1 cut(s)	575
Zsp2I	ATGCAT	1 cut(s)	471

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.