Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr3

Orthogroup ID

OG0000850

Physical Location & Seq

Genomic Coordinates Forward (+)

1899845 .. 1900619

Gene Structure 775 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom03g02500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

ATGTTTGTTGTGCAGTTAGTTGGAACGCTAGTAGCTTCAAGTGTCTACTTTGGCACATCCTGGTGGCTTCTCACAAGCATCGAGTACATCTGCGATCCATCGAAGCTGCCAGAGGGAAGTCCGTGGACATGCCCTGGTGACGATGTGTTCTACAATGCTTCGATCATATGGGGGGTCATAGGCCCACTCAGGATGTTCGGCAGCAAAGGTGTCTACCCGGAAATGAACTGGTTCTTCCTCATTGGCTTGCTTGCACCCGTTCCGATTTGGTTCCTCTCCAAAAAGTTCCCCAATCGGAAGTGGATTAAGCTCATAAACATGCCGATCATTCTGGGGGCAACGGGAAACATGCCGCCTGCTAGGGCTGTGAACTATTTGACATGGATTTCAGTTGGGATTTTCTTCAACATCTACGTGTACCGAAAGTACAAGGGGTGGTGGGCTAGACATAACTACATTCTATCTGCTGCTTTGGATGCTGGTGTGGCATTCACAGCTGTTCTTCTGTATTTCACCCTTCAAACCAAGGATATAATGGGGCCCAGCTGGTGGGGTCTCGAAGTGGATGACCATTGTCCGCTGGCCACGTGCCCAACGGCGCCAGGTGTAGTTGCCAAAGGTTGTCCAGTTCACTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005623 GO:0005886 GO:0005887 GO:0006810 GO:0006857 GO:0008150 GO:0015833 GO:0016020 GO:0016021 GO:0022857 GO:0031224 GO:0031226 GO:0035672 GO:0035673 GO:0042886 GO:0042887 GO:0044425 GO:0044459 GO:0044464 GO:0051179 GO:0051234 GO:0055085 GO:0071702 GO:0071705 GO:0071944 GO:1904680

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

OPT

Protein Analysis

212

Amino Acids

23.68

Weight (kDa)

8.78

Isoelectric Point (pI)

35.18

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
OPT	PF03169	1 - 172	2.2e-32	OPT oligopeptide transporter protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000850)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G26590 AT5G55930
fragaria_vesca	FvH4_3g42570 FvH4_3g42651 FvH4_3g42660 FvH4_3g42660 FvH4_3g42660 FvH4_3g42660
malus_domestica	MD03G1029800.v1.1 MD03G1029900.v1.1 MD03G1030000.v1.1 MD07G1217200.v1.1 MD11G1034800.v1.1 MD11G1035000.v1.1 MD11G1035100.v1.1
prunus_persica	Prupe.6G026000_v2.0.a1 Prupe.6G026100_v2.0.a1 Prupe.6G026200_v2.0.a1 Prupe.6G026200_v2.0.a1 Prupe.6G026300_v2.0.a1
pyrus_communis	pycom03g02480 pycom03g02500 pycom11g02890 pycom11g02900
rosa_chinensis	RchiOBHm_Chr5g0076291 RchiOBHm_Chr5g0076301 RchiOBHm_Chr5g0076311 RchiOBHm_Chr5g0076621 RchiOBHm_Chr5g0076671
rosa_laevigata	RLG00000036614 RLG00000036615 RLG00000036616 RLG00000036617
rosa_multiflora	Rmu_co8320621.1_g000001 Rmu_co8419599.1_g000001 Rmu_co8455339.1_g000001 Rmu_sc0005961.1_g000002 Rmu_sc0005961.1_g000003 Rmu_sc0013948.1_g000002 Rmu_sc0035770.1_g000001 Rmu_sc0040547.1_g000001
rosa_roxburghii	Rroxscaffold_1G00005490 Rroxscaffold_1G00005550 Rroxscaffold_1G00005560 Rroxscaffold_1G00005570
rosa_rugosa	Rorug05G0446700.1 Rorug05G0447000 Rorug05G0447100 Rorug05G0447200 Rorug05G0447200 Rorug05G0447300
rosa_samantha	Rh5AG501900 Rh5AG502000 Rh5AG502100 Rh5BG523700 Rh5BG523800 Rh5BG523900 Rh5CG547400 Rh5CG547500 Rh5CG547600 Rh5DG535900 Rh5DG536000 Rh5DG536100 Rh7AG436800
rosa_wichuraiana	Rw0G015040 Rw0G015060 Rw5G046590

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	598
AccB7I	CCANNNNNTGG	1 cut(s)	549
AccI	GTMKAC	2 cut(s)	45, 213
AciI	CCGC	2 cut(s)	353, 578
AclWI	GGATC	1 cut(s)	89
AcoI	YGGCCR	1 cut(s)	582
AcvI	CACGTG	1 cut(s)	588
AcyI	GRCGYC	1 cut(s)	599
AfaI	GTAC	3 cut(s)	86, 419, 428
AfiI	CCNNNNNNNGG	1 cut(s)	549
AflIII	ACRYGT	1 cut(s)	414
AgsI	TTSAA	3 cut(s)	39, 406, 521
AjnI	CCWGG	3 cut(s)	59, 133, 601
AluBI	AGCT	5 cut(s)	35, 106, 310, 497, 546
AluI	AGCT	5 cut(s)	35, 106, 310, 497, 546
Alw26I	GTCTC	1 cut(s)	560
AlwI	GGATC	1 cut(s)	89
AoxI	GGCC	3 cut(s)	181, 539, 582
ApaI	GGGCCC	1 cut(s)	543
ApeKI	GCWGC	3 cut(s)	106, 201, 467
Asp700I	GAANNNNTTC	1 cut(s)	230
AspLEI	GCGC	1 cut(s)	601
AspS9I	GGNCC	3 cut(s)	182, 539, 540
AsuC2I	CCSGG	1 cut(s)	218
AsuHPI	GGTGA	2 cut(s)	149, 505
BaeGI	GKGCMC	2 cut(s)	543, 593
BalI	TGGCCA	1 cut(s)	584
BanI	GGYRCC	1 cut(s)	598
BanII	GRGCYC	1 cut(s)	543
BbrPI	CACGTG	1 cut(s)	588
BbvI	GCAGC	3 cut(s)	93, 213, 454
BccI	CCATC	1 cut(s)	106
BceAI	ACGGC	1 cut(s)	612
BciT130I	CCWGG	3 cut(s)	61, 135, 603
BcnI	CCSGG	1 cut(s)	218
BcoDI	GTCTC	1 cut(s)	560
BfaI	CTAG	3 cut(s)	29, 360, 444
BfoI	RGCGCY	1 cut(s)	602
BisI	GCNGC	4 cut(s)	107, 202, 353, 468
BlsI	GCNGC	4 cut(s)	108, 203, 354, 469
Bme1390I	CCNGG	4 cut(s)	61, 135, 218, 603
BmgT120I	GGNCC	3 cut(s)	182, 539, 540
BmiI	GGNNCC	4 cut(s)	272, 540, 541, 600
BmrFI	CCNGG	4 cut(s)	61, 135, 218, 603
BmsI	GCATC	2 cut(s)	87, 466
BoxI	GACNNNNGTC	1 cut(s)	573
BpuMI	CCSGG	1 cut(s)	218
BsaAI	YACGTR	2 cut(s)	415, 588
BsaHI	GRCGYC	1 cut(s)	599
BsaI	GGTCTC	1 cut(s)	560
BsaJI	CCNNGG	3 cut(s)	122, 133, 525
Bsc4I	CCNNNNNNNGG	1 cut(s)	549
Bse1I	ACTGG	2 cut(s)	233, 626
BseBI	CCWGG	3 cut(s)	61, 135, 603
BseDI	CCNNGG	3 cut(s)	122, 133, 525
BseGI	GGATG	4 cut(s)	56, 198, 481, 571
BseLI	CCNNNNNNNGG	1 cut(s)	549
BseMII	CTCAG	1 cut(s)	202
BseNI	ACTGG	2 cut(s)	233, 626
BseSI	GKGCMC	2 cut(s)	543, 593
BseXI	GCAGC	3 cut(s)	93, 213, 454
BseYI	CCCAGC	1 cut(s)	542
BsgI	GTGCAG	1 cut(s)	32
BshFI	GGCC	3 cut(s)	183, 541, 584
BshNI	GGYRCC	1 cut(s)	598
BsiSI	CCGG	1 cut(s)	218
BslI	CCNNNNNNNGG	1 cut(s)	549
BsmAI	GTCTC	1 cut(s)	560
BsmI	GAATGC	1 cut(s)	488
BsnI	GGCC	3 cut(s)	183, 541, 584
Bso31I	GGTCTC	1 cut(s)	560
Bsp120I	GGGCCC	1 cut(s)	539
Bsp1286I	GDGCHC	2 cut(s)	543, 593
Bsp143I	GATC	3 cut(s)	94, 162, 324
BspACI	CCGC	2 cut(s)	353, 578
BspANI	GGCC	3 cut(s)	183, 541, 584
BspCNI	CTCAG	1 cut(s)	201
BspLI	GGNNCC	4 cut(s)	272, 540, 541, 600
BspPI	GGATC	1 cut(s)	89
BspT107I	GGYRCC	1 cut(s)	598
BspTNI	GGTCTC	1 cut(s)	560
BsrI	ACTGG	2 cut(s)	233, 626
BssECI	CCNNGG	3 cut(s)	122, 133, 525
BssMI	GATC	3 cut(s)	94, 162, 324
BssNI	GRCGYC	1 cut(s)	599
BssT1I	CCWWGG	1 cut(s)	525
Bst2UI	CCWGG	3 cut(s)	61, 135, 603
BstACI	GRCGYC	1 cut(s)	599
BstBAI	YACGTR	2 cut(s)	415, 588
BstC8I	GCNNGC	4 cut(s)	248, 252, 357, 582
BstDEI	CTNAG	1 cut(s)	188
BstDSI	CCRYGG	1 cut(s)	122
BstF5I	GGATG	4 cut(s)	56, 198, 481, 571
BstH2I	RGCGCY	1 cut(s)	602
BstHHI	GCGC	1 cut(s)	601
BstKTI	GATC	3 cut(s)	97, 165, 327
BstMAI	GTCTC	1 cut(s)	560
BstMBI	GATC	3 cut(s)	94, 162, 324
BstMWI	GCNNNNNNNGC	3 cut(s)	476, 485, 494
BstNI	CCWGG	3 cut(s)	61, 135, 603
BstNSI	RCATGY	3 cut(s)	132, 322, 352
BstPAI	GACNNNNGTC	1 cut(s)	573
BstSCI	CCNGG	4 cut(s)	59, 133, 216, 601
BstSLI	GKGCMC	2 cut(s)	543, 593
BstV1I	GCAGC	3 cut(s)	93, 213, 454
BsuRI	GGCC	3 cut(s)	183, 541, 584
BtgI	CCRYGG	1 cut(s)	122
BtsCI	GGATG	4 cut(s)	56, 198, 481, 571
Cac8I	GCNNGC	4 cut(s)	248, 252, 357, 582
CfoI	GCGC	1 cut(s)	601
Cfr13I	GGNCC	3 cut(s)	182, 539, 540
Csp6I	GTAC	3 cut(s)	85, 418, 427
CviAII	CATG	4 cut(s)	129, 319, 349, 381
CviQI	GTAC	3 cut(s)	85, 418, 427
DdeI	CTNAG	1 cut(s)	188
DinI	GGCGCC	1 cut(s)	600
DpnI	GATC	3 cut(s)	96, 164, 326
DpnII	GATC	3 cut(s)	94, 162, 324
EaeI	YGGCCR	1 cut(s)	582
Eco130I	CCWWGG	1 cut(s)	525
Eco24I	GRGCYC	1 cut(s)	543
Eco31I	GGTCTC	1 cut(s)	560
Eco72I	CACGTG	1 cut(s)	588
EcoO109I	RGGNCCY	1 cut(s)	539
EcoRII	CCWGG	3 cut(s)	59, 133, 601
EcoT14I	CCWWGG	1 cut(s)	525
EcoT38I	GRGCYC	1 cut(s)	543
EgeI	GGCGCC	1 cut(s)	600
EheI	GGCGCC	1 cut(s)	600
ErhI	CCWWGG	1 cut(s)	525
FaeI	CATG	4 cut(s)	132, 322, 352, 384
FatI	CATG	4 cut(s)	128, 318, 348, 380
FauNDI	CATATG	1 cut(s)	167
FblI	GTMKAC	2 cut(s)	45, 213
Fnu4HI	GCNGC	4 cut(s)	107, 202, 353, 468
FokI	GGATG	4 cut(s)	43, 205, 488, 578
FriOI	GRGCYC	1 cut(s)	543
Fsp4HI	GCNGC	4 cut(s)	107, 202, 353, 468
FspBI	CTAG	3 cut(s)	29, 360, 444
GlaI	GCGC	1 cut(s)	600
GluI	GCNGC	4 cut(s)	107, 202, 353, 468
GsaI	CCCAGC	1 cut(s)	546
HaeII	RGCGCY	1 cut(s)	602
HaeIII	GGCC	3 cut(s)	183, 541, 584
HapII	CCGG	1 cut(s)	218
HhaI	GCGC	1 cut(s)	601
Hin1I	GRCGYC	1 cut(s)	599
Hin1II	CATG	4 cut(s)	132, 322, 352, 384
Hin6I	GCGC	1 cut(s)	599
HinP1I	GCGC	1 cut(s)	599
HpaII	CCGG	1 cut(s)	218
HphI	GGTGA	2 cut(s)	149, 505
Hpy166II	GTNNAC	6 cut(s)	46, 126, 214, 370, 418, 631
Hpy188I	TCNGA	2 cut(s)	264, 297
Hpy188III	TCNNGA	2 cut(s)	190, 557
Hpy8I	GTNNAC	6 cut(s)	46, 126, 214, 370, 418, 631
HpyAV	CCTTC	1 cut(s)	527
HpyCH4IV	ACGT	2 cut(s)	414, 587
HpyCH4V	TGCA	2 cut(s)	13, 254
HpyF10VI	GCNNNNNNNGC	3 cut(s)	476, 485, 494
HpyF3I	CTNAG	1 cut(s)	188
HpySE526I	ACGT	2 cut(s)	414, 587
Hsp92I	GRCGYC	1 cut(s)	599
Hsp92II	CATG	4 cut(s)	132, 322, 352, 384
HspAI	GCGC	1 cut(s)	599
KasI	GGCGCC	1 cut(s)	598
Kzo9I	GATC	3 cut(s)	94, 162, 324
Lsp1109I	GCAGC	3 cut(s)	93, 213, 454
LweI	GCATC	2 cut(s)	87, 466
MaeI	CTAG	3 cut(s)	29, 360, 444
MaeII	ACGT	2 cut(s)	414, 587
MaeIII	GTNAC	1 cut(s)	137
MalI	GATC	3 cut(s)	96, 164, 326
MboI	GATC	3 cut(s)	94, 162, 324
MboII	GAAGA	3 cut(s)	226, 394, 494
MhlI	GDGCHC	2 cut(s)	543, 593
MlsI	TGGCCA	1 cut(s)	584
MluNI	TGGCCA	1 cut(s)	584
Mly113I	GGCGCC	1 cut(s)	599
MnlI	CCTC	3 cut(s)	106, 248, 284
Mox20I	TGGCCA	1 cut(s)	584
MroXI	GAANNNNTTC	1 cut(s)	230
MscI	TGGCCA	1 cut(s)	584
MseI	TTAA	1 cut(s)	306
MslI	CAYNNNNRTG	3 cut(s)	61, 317, 413
Msp20I	TGGCCA	1 cut(s)	584
MspA1I	CMGCKG	3 cut(s)	497, 546, 580
MspI	CCGG	1 cut(s)	218
MspR9I	CCNGG	4 cut(s)	61, 135, 218, 603
Mva1269I	GAATGC	1 cut(s)	488
MvaI	CCWGG	3 cut(s)	61, 135, 603
MwoI	GCNNNNNNNGC	3 cut(s)	476, 485, 494
NarI	GGCGCC	1 cut(s)	599
NciI	CCSGG	1 cut(s)	218
NdeI	CATATG	1 cut(s)	167
NdeII	GATC	3 cut(s)	94, 162, 324
NlaIII	CATG	4 cut(s)	132, 322, 352, 384
NlaIV	GGNNCC	4 cut(s)	272, 540, 541, 600
NmuCI	GTSAC	1 cut(s)	137
NspI	RCATGY	3 cut(s)	132, 322, 352
PctI	GAATGC	1 cut(s)	488
PdmI	GAANNNNTTC	1 cut(s)	230
PflMI	CCANNNNNTGG	1 cut(s)	549
PkrI	GCNGC	4 cut(s)	108, 203, 354, 469
PluTI	GGCGCC	1 cut(s)	602
PmaCI	CACGTG	1 cut(s)	588
PmlI	CACGTG	1 cut(s)	588
Ppu21I	YACGTR	2 cut(s)	415, 588
PshAI	GACNNNNGTC	1 cut(s)	573
Psp6I	CCWGG	3 cut(s)	59, 133, 601
PspCI	CACGTG	1 cut(s)	588
PspFI	CCCAGC	1 cut(s)	542
PspGI	CCWGG	3 cut(s)	59, 133, 601
PspN4I	GGNNCC	4 cut(s)	272, 540, 541, 600
PspOMI	GGGCCC	1 cut(s)	539
PspPI	GGNCC	3 cut(s)	182, 539, 540
PvuII	CAGCTG	2 cut(s)	497, 546
RsaI	GTAC	3 cut(s)	86, 419, 428
RsaNI	GTAC	3 cut(s)	85, 418, 427
RseI	CAYNNNNRTG	3 cut(s)	61, 317, 413
SaqAI	TTAA	1 cut(s)	306
SatI	GCNGC	4 cut(s)	107, 202, 353, 468
Sau3AI	GATC	3 cut(s)	94, 162, 324
Sau96I	GGNCC	3 cut(s)	182, 539, 540
ScrFI	CCNGG	4 cut(s)	61, 135, 218, 603
SduI	GDGCHC	2 cut(s)	543, 593
SfaNI	GCATC	2 cut(s)	87, 466
SfoI	GGCGCC	1 cut(s)	600
SmiMI	CAYNNNNRTG	3 cut(s)	61, 317, 413
SsiI	CCGC	2 cut(s)	353, 578
SspDI	GGCGCC	1 cut(s)	598
SspMI	CTAG	3 cut(s)	29, 360, 444
StyD4I	CCNGG	4 cut(s)	59, 133, 216, 601
StyI	CCWWGG	1 cut(s)	525
TaiI	ACGT	2 cut(s)	417, 590
TaqI	TCGA	4 cut(s)	81, 101, 161, 558
TatI	WGTACW	2 cut(s)	84, 426
TauI	GCSGC	1 cut(s)	355
Tru1I	TTAA	1 cut(s)	306
Tru9I	TTAA	1 cut(s)	306
TseFI	GTSAC	1 cut(s)	137
TseI	GCWGC	3 cut(s)	106, 201, 467
Tsp45I	GTSAC	1 cut(s)	137
TspDTI	ATGAA	1 cut(s)	239
TspGWI	ACGGA	1 cut(s)	111
Van91I	CCANNNNNTGG	1 cut(s)	549
XceI	RCATGY	3 cut(s)	132, 322, 352
XcmI	CCANNNNNNNNNTGG	1 cut(s)	532
XmiI	GTMKAC	2 cut(s)	45, 213
XmnI	GAANNNNTTC	1 cut(s)	230
XspI	CTAG	3 cut(s)	29, 360, 444

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.