Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0001152

Physical Location & Seq

Genomic Coordinates Forward (+)

36396231 .. 36399210

Gene Structure 2980 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g43690.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2325 bp

ATGGGGGAAATCTCCTTCTTATGTCGTCCTTCAAGAAGCAAAGGCATTTGCTTTGCTGAAAATCCCTTGGATTCTCCATTTTCTCGTCTCATGGCCCAAATCATCCTCTTTAATCTTACCTCCAGACTGCTTTATAGTATTCTAAAGCCTTTGGGGCAAACTAAATTTGTCTGCAATCTCCTGGGTGGCATTATCTTAGGGCCGTCTGTGATTGGGCAAAACAAGGTATTCAGAAACCAGCTATACGGAACAAATGAAGAAATTCCACTGTTCCGCGTAATACCTGTGATTGGCGTACTGTACTCCATATTCCTAATTTCAGTGAAGTTTGATCCACACCTAATCAAGAAGACAGCACAAAGTTCATGGAAGATTGGTGCATTGACGTTCCTTTTTCCTTCTATCATCCTCCTTTACCCTATAACCCAAGTTCGAATTCTCAACAGTTTCTATGCTCCCAACTTTCTCATACTACTGACCGGCATACTATCTTGGTCCATGAGTTTTTTTCCGGTCATAACCGAGGCCTTGTATGAACTTAATCTCATGACTTCAGAGTTGGGCCAACTCGCCATGTCCTCGGCAATTCTCAACGATGCTGCACTATGGTTCCTCGTTTTTCTTAATATGGCTGTTTCATCCCAAGGTATTCCGGTATTGCTTTCGACAGTCGGGTTGTTACTCTTCACAGTCTATGTCTTACGCCCACTTATGCTAATGATAGTAAAGAAAACACCCCAAGGAGAACAAGTAAAGGAAATCTATATAGTCGGTATACTTCTTGGGGTTCTAGTCATGACCTTTGTAACCGACGCCATAGGCCTAGTGTATAACTTGGGTCCTTTACTTTTAGGGTTGATCATACCAGACGGACCGCCGCTAGGATCAACTTTGACAGCCAAGACGGAATTCTTGGTCTCGGAATTTCTTATGCCGGTGCTGTTTTCGCATATCGGCAACGATGTTAATGTGTTTTTGATTGACAACTGGACTAGGTTTGCCAAGCTTCAGACTATTATTGTTGCGTTGTTTGTGACAAAGATTGTAGGGGTTACACTGGCTGGCTTGTGCTGCAAAATTAGCTTGAGAAATAGTCTCGTGCTCAGCATGGTCATGAGTATGAAGGGTATAATAGAGGTTATGATGTATCACAGGTTGATGACCTTCAAGATGATAGATGGACAGTTTTTCACTCAGTTGATCTTGTCTGCACTGATGATCACCATGATTGTCACACCAATTGTACATTTCTCGTATACTCCTCAAAAACAACTCCAGAGATCAACTAGATATTCACAGGCCAGAAGCATCCAATCACTGCCAAATAGCGCTAGCTCCGGAACTTTTCAGATTCTTTGTTGTGTCCACAGTGAAGAAAGTGCCCGCAGCATCATCACCTTCTTAGAAGCTTCAAATCCAACAAACTCAAGCCCCATTTGCACCTACCTTGTCCACCTTGTTGATTTAGTTGGCAGCTCTGCACCACAATTGACACCTTACAAGAAAAAGAAATTCAGACGGTTGGATTCACCATCACATCAAATGATGCGAGCCTTCGAGAATTACTCAGAAAACTCAAAAGGACCTGTGACAATTCATCCCTATACTGTGGTGGCTCCTTGCAAATCCATGCATGAGTTCATTTTTCGTCTAGCTCGTGAGAAGTTCGTTCCTCTTATAATCATCCCGTTCGTCGATAACCACGATCAGACTATTGGCGGTGCTTCCACTAGCATTGTAAGCCAATTGAACCGTAATTTACAAGCGTTTTCTCAATGCACAATCGGAATCCTAGTTGAAAAACGATTGCCTTGTCGCGCAAGCAGTGTCTCAAACTTCTCTTACGTTGTGGCTGTATTTTTCATCGGCGGACCAGATGACCGTGAGGCATTAGCCTATGCATCACGCATGGCTAACAACCCGGACGTGGACATCATGGTGTTCAGGACTCTGGTGCAGGCCAATAAGACAGAAAATATTGAGGAAAGGGAGAGAGAGTTTGAGCTAGACGAGTCATTGTTAGATGAGTTTAAGCTAAGGAACGCCCGGAATGAGAGGCTGAAATGGCGTGATATTGTGGTGAATGATGGTGTTGAGGTTGTGAATGCTATCAAGAATTTGCAAGGTATGTATGACCTAGTGATGGTGGGGCGGCGACATGTCGATTTTTCGTTCGGGGATGAAGAGATGGCAGGCTTATTGCATTATCCAGAGCTTGGAGTGATCGGCGATATGCTCGCTTCTTCAGATTTCTGTGGTGGAATGGTGAATGTGTTGGTGATGCAAGAAAGTAGGAGCTTGAGTTGTGGAACTTTTTATAATTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0006810 GO:0006811 GO:0006812 GO:0006885 GO:0008150 GO:0012505 GO:0015672 GO:0042592 GO:0044464 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055067 GO:0055080 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_H_Exchanger

Protein Analysis

775

Amino Acids

86.48

Weight (kDa)

8.43

Isoelectric Point (pI)

44.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Na_H_Exchanger	PF00999	43 - 415	4.9e-31	Sodium/hydrogen exchanger, transmembrane
CHX17_C	PF23259	615 - 763	8.5e-12	Plant cation/H(+) antiporter, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001152)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g43690 FvH4_7g25211 FvH4_7g25250 FvH4_7g25290 FvH4_7g25310
malus_domestica	MD01G1158700.v1.1 MD01G1158800.v1.1 MD07G1227200.v1.1 MD07G1227600.v1.1
prunus_persica	Prupe.2G257000_v2.0.a1 Prupe.2G257100_v2.0.a1
pyrus_communis	pycom01g17540
rosa_chinensis	RchiOBHm_Chr1g0371191 RchiOBHm_Chr1g0371201 RchiOBHm_Chr1g0371211
rosa_laevigata	RLG00000026978 RLG00000026979 RLG00000026980 RLG00000026981 RLG00000026983 RLG00000036771
rosa_multiflora	Rmu_co8222838.1_g000001 Rmu_sc0000631.1_g000023 Rmu_sc0001018.1_g000042 Rmu_sc0001018.1_g000044 Rmu_sc0001018.1_g000049 Rmu_sc0001018.1_g000050 Rmu_sc0001018.1_g000051 Rmu_sc0008081.1_g000003
rosa_roxburghii	Rroxscaffold_4G00285900 Rroxscaffold_4G00285910
rosa_rugosa	Rorug01G0361700 Rorug01G0361900 Rorug01G0362000 Rorug01G0362200 Rorug05G0460600
rosa_samantha	Rh1AG372000 Rh1AG372200 Rh1AG372300 Rh1BG335100 Rh1BG335500 Rh1BG335700 Rh1BG335800 Rh1CG348600 Rh1CG349000 Rh1CG349100 Rh1CG349200 Rh1DG366500 Rh1DG366900 Rh1DG367000 Rh5BG537300 Rh5CG560800 Rh5DG548900
rosa_wichuraiana	Rw1G032720 Rw1G032730 Rw1G032740 Rw5G047750 Rw5G047880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1679, 2319
AccB7I	CCANNNNNTGG	1 cut(s)	2216
AccI	GTMKAC	2 cut(s)	775, 1256
AccII	CGCG	2 cut(s)	276, 1818
AccIII	TCCGGA	1 cut(s)	1337
AciI	CCGC	7 cut(s)	274, 875, 878, 1384, 1719, 1869, 2152
AclWI	GGATC	2 cut(s)	326, 892
AcsI	RAATTY	7 cut(s)	164, 261, 435, 908, 923, 1511, 2116
AcuI	CTGAAG	3 cut(s)	537, 992, 2229
AcyI	GRCGYC	1 cut(s)	813
AfaI	GTAC	3 cut(s)	297, 302, 1245
AfeI	AGCGCT	1 cut(s)	1330
AfiI	CCNNNNNNNGG	5 cut(s)	290, 881, 1927, 2143, 2216
AflIII	ACRYGT	1 cut(s)	2158
AgsI	TTSAA	5 cut(s)	33, 1168, 1413, 1750, 1799
AjiI	CACGTC	1 cut(s)	1927
AjnI	CCWGG	1 cut(s)	180
AjuI	GAANNNNNNNTTGG	4 cut(s)	420, 452, 893, 925
Alw21I	GWGCWC	1 cut(s)	1104
Alw26I	GTCTC	4 cut(s)	92, 922, 1100, 1834
AlwI	GGATC	2 cut(s)	326, 892
Aor13HI	TCCGGA	1 cut(s)	1337
Aor51HI	AGCGCT	1 cut(s)	1330
AoxI	GGCC	7 cut(s)	93, 200, 525, 562, 820, 1299, 1959
ApeKI	GCWGC	4 cut(s)	599, 1071, 1386, 1473
ApoI	RAATTY	7 cut(s)	164, 261, 435, 908, 923, 1511, 2116
Asp700I	GAANNNNTTC	1 cut(s)	261
AspLEI	GCGC	2 cut(s)	1331, 1820
AspS9I	GGNCC	8 cut(s)	94, 200, 495, 562, 839, 872, 1583, 1871
AsuC2I	CCSGG	2 cut(s)	1922, 2047
AsuHPI	GGTGA	6 cut(s)	1213, 1387, 1521, 2092, 2278, 2290
AsuII	TTCGAA	1 cut(s)	433
AsuNHI	GCTAGC	1 cut(s)	1331
AvaII	GGWCC	5 cut(s)	495, 839, 872, 1583, 1871
BaeGI	GKGCMC	1 cut(s)	1384
BauI	CACGAG	2 cut(s)	1097, 1656
BbsI	GAAGAC	1 cut(s)	356
Bbv12I	GWGCWC	1 cut(s)	1104
BbvI	GCAGC	4 cut(s)	586, 1058, 1398, 1485
BccI	CCATC	5 cut(s)	1172, 1540, 2081, 2137, 2182
BceAI	ACGGC	1 cut(s)	187
BciT130I	CCWGG	1 cut(s)	182
BclI	TGATCA	2 cut(s)	858, 1218
BcnI	CCSGG	2 cut(s)	1922, 2047
BcoDI	GTCTC	4 cut(s)	92, 922, 1100, 1834
BfoI	RGCGCY	1 cut(s)	1332
BglI	GCCNNNNNGGC	1 cut(s)	154
BisI	GCNGC	6 cut(s)	600, 878, 1072, 1387, 1474, 2153
BlpI	GCTNAGC	1 cut(s)	1103
BlsI	GCNGC	6 cut(s)	601, 879, 1073, 1388, 1475, 2154
Bme1390I	CCNGG	3 cut(s)	182, 1922, 2047
Bme18I	GGWCC	5 cut(s)	495, 839, 872, 1583, 1871
BmgBI	CACGTC	1 cut(s)	1927
BmgT120I	GGNCC	8 cut(s)	94, 200, 495, 562, 839, 872, 1583, 1871
BmiI	GGNNCC	3 cut(s)	611, 840, 1617
BmrFI	CCNGG	3 cut(s)	182, 1922, 2047
BmsI	GCATC	6 cut(s)	586, 1317, 1398, 1536, 1910, 2271
BmtI	GCTAGC	1 cut(s)	1335
BpiI	GAAGAC	1 cut(s)	356
BplI	GAGNNNNNCTC	2 cut(s)	1550, 1582
BpmI	CTGGAG	2 cut(s)	106, 1259
Bpu10I	CCTNAGC	1 cut(s)	2036
Bpu1102I	GCTNAGC	1 cut(s)	1103
Bpu14I	TTCGAA	1 cut(s)	433
BpuEI	CTTGAG	3 cut(s)	1105, 1411, 2320
BpuMI	CCSGG	2 cut(s)	1922, 2047
BsaHI	GRCGYC	1 cut(s)	813
BsaI	GGTCTC	1 cut(s)	922
BsaJI	CCNNGG	6 cut(s)	66, 181, 522, 579, 643, 739
BsaWI	WCCGGW	3 cut(s)	511, 652, 1337
BsaXI	ACNNNNNCTCC	6 cut(s)	735, 765, 1982, 2012, 2287, 2317
Bsc4I	CCNNNNNNNGG	5 cut(s)	290, 881, 1927, 2143, 2216
Bse118I	RCCGGY	2 cut(s)	479, 934
Bse1I	ACTGG	2 cut(s)	992, 1062
BseAI	TCCGGA	1 cut(s)	1337
BseBI	CCWGG	1 cut(s)	182
BseDI	CCNNGG	6 cut(s)	66, 181, 522, 579, 643, 739
BseGI	GGATG	7 cut(s)	102, 405, 638, 1308, 1597, 1683, 2185
BseLI	CCNNNNNNNGG	5 cut(s)	290, 881, 1927, 2143, 2216
BseMII	CTCAG	3 cut(s)	1117, 1208, 1581
BseNI	ACTGG	2 cut(s)	992, 1062
BseRI	GAGGAG	1 cut(s)	1251
BseSI	GKGCMC	1 cut(s)	1384
BseXI	GCAGC	4 cut(s)	586, 1058, 1398, 1485
BsgI	GTGCAG	4 cut(s)	585, 1194, 1464, 1976
Bsh1236I	CGCG	2 cut(s)	276, 1818
BshFI	GGCC	7 cut(s)	95, 202, 527, 564, 822, 1301, 1961
BsiHKAI	GWGCWC	1 cut(s)	1104
BsiSI	CCGG	7 cut(s)	480, 512, 653, 935, 1338, 1922, 2047
BslI	CCNNNNNNNGG	5 cut(s)	290, 881, 1927, 2143, 2216
BsmAI	GTCTC	4 cut(s)	92, 922, 1100, 1834
BsmBI	CGTCTC	1 cut(s)	92
BsmI	GAATGC	1 cut(s)	2110
BsnI	GGCC	7 cut(s)	95, 202, 527, 564, 822, 1301, 1961
Bso31I	GGTCTC	1 cut(s)	922
Bsp119I	TTCGAA	1 cut(s)	433
Bsp1286I	GDGCHC	2 cut(s)	1104, 1384
Bsp13I	TCCGGA	1 cut(s)	1337
Bsp1407I	TGTACA	1 cut(s)	1243
Bsp143I	GATC	8 cut(s)	331, 858, 884, 1200, 1218, 1280, 1705, 2223
Bsp1720I	GCTNAGC	1 cut(s)	1103
BspACI	CCGC	7 cut(s)	274, 875, 878, 1384, 1719, 1869, 2152
BspANI	GGCC	7 cut(s)	95, 202, 527, 564, 822, 1301, 1961
BspCNI	CTCAG	3 cut(s)	1116, 1207, 1580
BspEI	TCCGGA	1 cut(s)	1337
BspFNI	CGCG	2 cut(s)	276, 1818
BspHI	TCATGA	3 cut(s)	546, 795, 1113
BspLI	GGNNCC	3 cut(s)	611, 840, 1617
BspOI	GCTAGC	1 cut(s)	1335
BspPI	GGATC	2 cut(s)	326, 892
BspT104I	TTCGAA	1 cut(s)	433
BspTNI	GGTCTC	1 cut(s)	922
BsrFI	RCCGGY	2 cut(s)	479, 934
BsrGI	TGTACA	1 cut(s)	1243
BsrI	ACTGG	2 cut(s)	992, 1062
BssAI	RCCGGY	2 cut(s)	479, 934
BssECI	CCNNGG	6 cut(s)	66, 181, 522, 579, 643, 739
BssMI	GATC	8 cut(s)	331, 858, 884, 1200, 1218, 1280, 1705, 2223
BssNAI	GTATAC	2 cut(s)	776, 1257
BssNI	GRCGYC	1 cut(s)	813
BssSI	CACGAG	2 cut(s)	1097, 1656
BssT1I	CCWWGG	3 cut(s)	66, 643, 739
Bst1107I	GTATAC	2 cut(s)	776, 1257
Bst2BI	CACGAG	2 cut(s)	1097, 1656
Bst2UI	CCWGG	1 cut(s)	182
Bst6I	CTCTTC	2 cut(s)	689, 2178
BstACI	GRCGYC	1 cut(s)	813
BstAUI	TGTACA	1 cut(s)	1243
BstBI	TTCGAA	1 cut(s)	433
BstC8I	GCNNGC	8 cut(s)	1063, 1333, 1384, 1551, 1822, 1959, 2194, 2238
BstDEI	CTNAG	6 cut(s)	196, 1103, 1194, 1402, 1567, 2036
BstF5I	GGATG	7 cut(s)	102, 405, 638, 1308, 1597, 1683, 2185
BstFNI	CGCG	2 cut(s)	276, 1818
BstH2I	RGCGCY	1 cut(s)	1332
BstHHI	GCGC	2 cut(s)	1331, 1820
BstKTI	GATC	8 cut(s)	334, 861, 887, 1203, 1221, 1283, 1708, 2226
BstMAI	GTCTC	4 cut(s)	92, 922, 1100, 1834
BstMBI	GATC	8 cut(s)	331, 858, 884, 1200, 1218, 1280, 1705, 2223
BstMWI	GCNNNNNNNGC	7 cut(s)	154, 946, 1071, 1080, 1437, 1740, 2065
BstNI	CCWGG	1 cut(s)	182
BstNSI	RCATGY	1 cut(s)	2162
BstSCI	CCNGG	3 cut(s)	180, 1920, 2045
BstSLI	GKGCMC	1 cut(s)	1384
BstUI	CGCG	2 cut(s)	276, 1818
BstV1I	GCAGC	4 cut(s)	586, 1058, 1398, 1485
BstV2I	GAAGAC	1 cut(s)	356
BstZ17I	GTATAC	2 cut(s)	776, 1257
BsuRI	GGCC	7 cut(s)	95, 202, 527, 564, 822, 1301, 1961
BtrI	CACGTC	1 cut(s)	1927
BtsCI	GGATG	7 cut(s)	102, 405, 638, 1308, 1597, 1683, 2185
BtsI	GCAGTG	2 cut(s)	1316, 1831
BtsIMutI	CAGTG	7 cut(s)	266, 327, 1055, 1211, 1316, 1375, 1831
Cac8I	GCNNGC	8 cut(s)	1063, 1333, 1384, 1551, 1822, 1959, 2194, 2238
CciI	TCATGA	3 cut(s)	546, 795, 1113
CfoI	GCGC	2 cut(s)	1331, 1820
Cfr10I	RCCGGY	2 cut(s)	479, 934
Cfr13I	GGNCC	8 cut(s)	94, 200, 495, 562, 839, 872, 1583, 1871
CpoI	CGGWCCG	1 cut(s)	872
CseI	GACGC	1 cut(s)	821
Csp6I	GTAC	3 cut(s)	296, 301, 1244
CspCI	CAANNNNNGTGG	2 cut(s)	1717, 1752
CspI	CGGWCCG	1 cut(s)	872
CviQI	GTAC	3 cut(s)	296, 301, 1244
DdeI	CTNAG	6 cut(s)	196, 1103, 1194, 1402, 1567, 2036
DpnI	GATC	8 cut(s)	333, 860, 886, 1202, 1220, 1282, 1707, 2225
DpnII	GATC	8 cut(s)	331, 858, 884, 1200, 1218, 1280, 1705, 2223
Eam1104I	CTCTTC	2 cut(s)	689, 2178
EarI	CTCTTC	2 cut(s)	689, 2178
EciI	GGCGGA	1 cut(s)	1884
Eco130I	CCWWGG	3 cut(s)	66, 643, 739
Eco147I	AGGCCT	2 cut(s)	527, 822
Eco31I	GGTCTC	1 cut(s)	922
Eco47I	GGWCC	5 cut(s)	495, 839, 872, 1583, 1871
Eco47III	AGCGCT	1 cut(s)	1330
Eco57I	CTGAAG	3 cut(s)	537, 992, 2229
EcoO109I	RGGNCCY	2 cut(s)	839, 1583
EcoRI	GAATTC	2 cut(s)	435, 908
EcoRII	CCWGG	1 cut(s)	180
EcoT14I	CCWWGG	3 cut(s)	66, 643, 739
EcoT22I	ATGCAT	2 cut(s)	1635, 1903
ErhI	CCWWGG	3 cut(s)	66, 643, 739
Esp3I	CGTCTC	1 cut(s)	92
FauI	CCCGC	1 cut(s)	1391
FbaI	TGATCA	2 cut(s)	858, 1218
FblI	GTMKAC	2 cut(s)	775, 1256
Fnu4HI	GCNGC	6 cut(s)	600, 878, 1072, 1387, 1474, 2153
FokI	GGATG	7 cut(s)	89, 392, 625, 1295, 1584, 1670, 2192
Fsp4HI	GCNGC	6 cut(s)	600, 878, 1072, 1387, 1474, 2153
GlaI	GCGC	2 cut(s)	1330, 1819
GluI	GCNGC	6 cut(s)	600, 878, 1072, 1387, 1474, 2153
GsuI	CTGGAG	2 cut(s)	106, 1259
HaeII	RGCGCY	1 cut(s)	1332
HaeIII	GGCC	7 cut(s)	95, 202, 527, 564, 822, 1301, 1961
HapII	CCGG	7 cut(s)	480, 512, 653, 935, 1338, 1922, 2047
HgaI	GACGC	1 cut(s)	821
HhaI	GCGC	2 cut(s)	1331, 1820
Hin1I	GRCGYC	1 cut(s)	813
Hin6I	GCGC	2 cut(s)	1329, 1818
HinP1I	GCGC	2 cut(s)	1329, 1818
HindIII	AAGCTT	2 cut(s)	1004, 1407
HinfI	GANTC	6 cut(s)	71, 1351, 1526, 1788, 1948, 2012
HpaII	CCGG	7 cut(s)	480, 512, 653, 935, 1338, 1922, 2047
HphI	GGTGA	6 cut(s)	1213, 1387, 1521, 2092, 2278, 2290
Hpy166II	GTNNAC	5 cut(s)	776, 1257, 1366, 1453, 1930
Hpy8I	GTNNAC	5 cut(s)	776, 1257, 1366, 1453, 1930
Hpy99I	CGWCG	2 cut(s)	815, 1697
HpyAV	CCTTC	7 cut(s)	25, 39, 408, 1117, 1174, 1408, 1564
HpyCH4IV	ACGT	3 cut(s)	386, 1845, 1926
HpyF10VI	GCNNNNNNNGC	7 cut(s)	154, 946, 1071, 1080, 1437, 1740, 2065
HpyF3I	CTNAG	6 cut(s)	196, 1103, 1194, 1402, 1567, 2036
HpySE526I	ACGT	3 cut(s)	386, 1845, 1926
Hsp92I	GRCGYC	1 cut(s)	813
HspAI	GCGC	2 cut(s)	1329, 1818
Kpn2I	TCCGGA	1 cut(s)	1337
Ksp22I	TGATCA	2 cut(s)	858, 1218
Kzo9I	GATC	8 cut(s)	331, 858, 884, 1200, 1218, 1280, 1705, 2223
LmnI	GCTCC	4 cut(s)	460, 1340, 1621, 2295
Lsp1109I	GCAGC	4 cut(s)	586, 1058, 1398, 1485
LweI	GCATC	6 cut(s)	586, 1317, 1398, 1536, 1910, 2271
MaeII	ACGT	3 cut(s)	386, 1845, 1926
MaeIII	GTNAC	6 cut(s)	678, 805, 1033, 1051, 1231, 1588
MalI	GATC	8 cut(s)	333, 860, 886, 1202, 1220, 1282, 1707, 2225
MboI	GATC	8 cut(s)	331, 858, 884, 1200, 1218, 1280, 1705, 2223
MboII	GAAGA	7 cut(s)	269, 361, 382, 676, 1385, 2195, 2235
MfeI	CAATTG	3 cut(s)	1239, 1487, 1745
MhlI	GDGCHC	2 cut(s)	1104, 1384
MlyI	GAGTC	2 cut(s)	1942, 2021
MmeI	TCCRAC	2 cut(s)	1442, 1503
Mph1103I	ATGCAT	2 cut(s)	1635, 1903
MroI	TCCGGA	1 cut(s)	1337
MroXI	GAANNNNTTC	1 cut(s)	261
MseI	TTAA	5 cut(s)	111, 540, 624, 966, 2031
MslI	CAYNNNNRTG	3 cut(s)	1112, 1118, 1937
MspI	CCGG	7 cut(s)	480, 512, 653, 935, 1338, 1922, 2047
MspR9I	CCNGG	3 cut(s)	182, 1922, 2047
MunI	CAATTG	3 cut(s)	1239, 1487, 1745
Mva1269I	GAATGC	1 cut(s)	2110
MvaI	CCWGG	1 cut(s)	182
MvnI	CGCG	2 cut(s)	276, 1818
MwoI	GCNNNNNNNGC	7 cut(s)	154, 946, 1071, 1080, 1437, 1740, 2065
NciI	CCSGG	2 cut(s)	1922, 2047
NdeII	GATC	8 cut(s)	331, 858, 884, 1200, 1218, 1280, 1705, 2223
NheI	GCTAGC	1 cut(s)	1331
NlaIV	GGNNCC	3 cut(s)	611, 840, 1617
NmeAIII	GCCGAG	1 cut(s)	560
NmuCI	GTSAC	3 cut(s)	1033, 1231, 1588
NsiI	ATGCAT	2 cut(s)	1635, 1903
NspI	RCATGY	1 cut(s)	2162
NspV	TTCGAA	1 cut(s)	433
PagI	TCATGA	3 cut(s)	546, 795, 1113
PceI	AGGCCT	2 cut(s)	527, 822
PciI	ACATGT	1 cut(s)	2158
PcsI	WCGNNNNNNNCGW	2 cut(s)	1654, 1701
PctI	GAATGC	1 cut(s)	2110
PdmI	GAANNNNTTC	1 cut(s)	261
PfeI	GAWTC	4 cut(s)	71, 1351, 1526, 1788
PflMI	CCANNNNNTGG	1 cut(s)	2216
PkrI	GCNGC	6 cut(s)	601, 879, 1073, 1388, 1475, 2154
PleI	GAGTC	2 cut(s)	1942, 2020
PpsI	GAGTC	2 cut(s)	1942, 2020
PpuMI	RGGWCCY	2 cut(s)	839, 1583
PscI	ACATGT	1 cut(s)	2158
PsiI	TTATAA	2 cut(s)	1679, 2319
Psp5II	RGGWCCY	2 cut(s)	839, 1583
Psp6I	CCWGG	1 cut(s)	180
PspGI	CCWGG	1 cut(s)	180
PspN4I	GGNNCC	3 cut(s)	611, 840, 1617
PspPI	GGNCC	8 cut(s)	94, 200, 495, 562, 839, 872, 1583, 1871
PspPPI	RGGWCCY	2 cut(s)	839, 1583
RsaI	GTAC	3 cut(s)	297, 302, 1245
RsaNI	GTAC	3 cut(s)	296, 301, 1244
RseI	CAYNNNNRTG	3 cut(s)	1112, 1118, 1937
Rsr2I	CGGWCCG	1 cut(s)	872
RsrII	CGGWCCG	1 cut(s)	872
SaqAI	TTAA	5 cut(s)	111, 540, 624, 966, 2031
SatI	GCNGC	6 cut(s)	600, 878, 1072, 1387, 1474, 2153
Sau3AI	GATC	8 cut(s)	331, 858, 884, 1200, 1218, 1280, 1705, 2223
Sau96I	GGNCC	8 cut(s)	94, 200, 495, 562, 839, 872, 1583, 1871
SchI	GAGTC	2 cut(s)	1942, 2021
ScrFI	CCNGG	3 cut(s)	182, 1922, 2047
SduI	GDGCHC	2 cut(s)	1104, 1384
SfaNI	GCATC	6 cut(s)	586, 1317, 1398, 1536, 1910, 2271
SfuI	TTCGAA	1 cut(s)	433
SinI	GGWCC	5 cut(s)	495, 839, 872, 1583, 1871
SmiMI	CAYNNNNRTG	3 cut(s)	1112, 1118, 1937
SmlI	CTYRAG	3 cut(s)	1084, 1426, 2299
SmoI	CTYRAG	3 cut(s)	1084, 1426, 2299
SseBI	AGGCCT	2 cut(s)	527, 822
SsiI	CCGC	7 cut(s)	274, 875, 878, 1384, 1719, 1869, 2152
SspI	AATATT	1 cut(s)	1978
StuI	AGGCCT	2 cut(s)	527, 822
StyD4I	CCNGG	3 cut(s)	180, 1920, 2045
StyI	CCWWGG	3 cut(s)	66, 643, 739
TaiI	ACGT	3 cut(s)	389, 1848, 1929
TaqI	TCGA	5 cut(s)	433, 665, 1557, 1695, 2163
TatI	WGTACW	2 cut(s)	300, 1243
TauI	GCSGC	2 cut(s)	880, 2155
TfiI	GAWTC	4 cut(s)	71, 1351, 1526, 1788
Tru1I	TTAA	5 cut(s)	111, 540, 624, 966, 2031
Tru9I	TTAA	5 cut(s)	111, 540, 624, 966, 2031
TscAI	CASTG	7 cut(s)	273, 327, 1062, 1218, 1323, 1375, 1831
TseFI	GTSAC	3 cut(s)	1033, 1231, 1588
TseI	GCWGC	4 cut(s)	599, 1071, 1386, 1473
Tsp45I	GTSAC	3 cut(s)	1033, 1231, 1588
TspDTI	ATGAA	9 cut(s)	270, 354, 549, 627, 1136, 1586, 1630, 1852, 2196
TspGWI	ACGGA	3 cut(s)	261, 885, 920
TspRI	CASTG	7 cut(s)	273, 327, 1062, 1218, 1323, 1375, 1831
Van91I	CCANNNNNTGG	1 cut(s)	2216
VpaK11BI	GGWCC	5 cut(s)	495, 839, 872, 1583, 1871
XapI	RAATTY	7 cut(s)	164, 261, 435, 908, 923, 1511, 2116
XceI	RCATGY	1 cut(s)	2162
XmiI	GTMKAC	2 cut(s)	775, 1256
XmnI	GAANNNNTTC	1 cut(s)	261
Zsp2I	ATGCAT	2 cut(s)	1635, 1903

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.