Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0001152

Physical Location & Seq

Genomic Coordinates Forward (+)

47744999 .. 47745403

Gene Structure 405 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0361900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 405 bp

ATGGAGATGCTATGGACGTGGCTTTTGAGTATCTTCTTCATCTTAACTCTCTTATGCCTTGTGGGTTATCAGCTTATGTGCCTAATGGACCTCGAGGACGATTACATCAACTCATATGATTCATCATCTCGGATAAACCGTATTGTTTTGCCAGAGTTTATCGTTCAAGGAGTTTTCTGCGTCATTCTTTTTATAACGAGACATTGGTTTATGCTTCCATTGGCTCTCCCGCACCTATATTATAACGTCAATTCGTACATGAAGGGCCGGCACTTGGCAGATGTGACTGAGATCTACAACCTGCTGAGCTGGGAGAAAAAACAACGCATCTTCAAGATTGCCTATCTGTTCATCCTGGCCATCCTCTCTCTATTCGGGTTGTTTTGGAGCATTGGAGATGAATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0006810 GO:0006811 GO:0006812 GO:0006885 GO:0008150 GO:0012505 GO:0015672 GO:0042592 GO:0044464 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055067 GO:0055080 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_H_Exchanger

Protein Analysis

134

Amino Acids

15.99

Weight (kDa)

5.52

Isoelectric Point (pI)

38.3

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Cornichon	PF03311	5 - 125	1.2e-39	Cornichon protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0001152)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g43690 FvH4_7g25211 FvH4_7g25250 FvH4_7g25290 FvH4_7g25310
malus_domestica	MD01G1158700.v1.1 MD01G1158800.v1.1 MD07G1227200.v1.1 MD07G1227600.v1.1
prunus_persica	Prupe.2G257000_v2.0.a1 Prupe.2G257100_v2.0.a1
pyrus_communis	pycom01g17540
rosa_chinensis	RchiOBHm_Chr1g0371191 RchiOBHm_Chr1g0371201 RchiOBHm_Chr1g0371211
rosa_laevigata	RLG00000026978 RLG00000026979 RLG00000026980 RLG00000026981 RLG00000026983 RLG00000036771
rosa_multiflora	Rmu_co8222838.1_g000001 Rmu_sc0000631.1_g000023 Rmu_sc0001018.1_g000042 Rmu_sc0001018.1_g000044 Rmu_sc0001018.1_g000049 Rmu_sc0001018.1_g000050 Rmu_sc0001018.1_g000051 Rmu_sc0008081.1_g000003
rosa_roxburghii	Rroxscaffold_4G00285900 Rroxscaffold_4G00285910
rosa_rugosa	Rorug01G0361700 Rorug01G0361900 Rorug01G0362000 Rorug01G0362200 Rorug05G0460600
rosa_samantha	Rh1AG372000 Rh1AG372200 Rh1AG372300 Rh1BG335100 Rh1BG335500 Rh1BG335700 Rh1BG335800 Rh1CG348600 Rh1CG349000 Rh1CG349100 Rh1CG349200 Rh1DG366500 Rh1DG366900 Rh1DG367000 Rh5BG537300 Rh5CG560800 Rh5DG548900
rosa_wichuraiana	Rw1G032720 Rw1G032730 Rw1G032740 Rw5G047750 Rw5G047880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	194, 243
AbsI	CCTCGAGG	1 cut(s)	92
Acc36I	ACCTGC	1 cut(s)	309
AciI	CCGC	1 cut(s)	230
AcoI	YGGCCR	1 cut(s)	357
AfaI	GTAC	1 cut(s)	257
AfiI	CCNNNNNNNGG	1 cut(s)	274
AgsI	TTSAA	2 cut(s)	167, 334
AjiI	CACGTC	1 cut(s)	18
AjnI	CCWGG	1 cut(s)	354
AluBI	AGCT	2 cut(s)	73, 309
AluI	AGCT	2 cut(s)	73, 309
Alw26I	GTCTC	1 cut(s)	193
Ama87I	CYCGRG	1 cut(s)	92
AoxI	GGCC	2 cut(s)	265, 357
ArsI	GACNNNNNNTTYG	2 cut(s)	7, 39
AspS9I	GGNCC	2 cut(s)	88, 265
AvaI	CYCGRG	1 cut(s)	92
AvaII	GGWCC	1 cut(s)	88
BalI	TGGCCA	1 cut(s)	359
BccI	CCATC	1 cut(s)	368
BciT130I	CCWGG	1 cut(s)	356
BcoDI	GTCTC	1 cut(s)	193
BfuAI	ACCTGC	1 cut(s)	309
BglII	AGATCT	1 cut(s)	291
BlpI	GCTNAGC	1 cut(s)	305
Bme1390I	CCNGG	1 cut(s)	356
Bme18I	GGWCC	1 cut(s)	88
BmeT110I	CYCGRG	1 cut(s)	92
BmgBI	CACGTC	1 cut(s)	18
BmgT120I	GGNCC	2 cut(s)	88, 265
BmrFI	CCNGG	1 cut(s)	356
BmsI	GCATC	1 cut(s)	336
Bpu1102I	GCTNAGC	1 cut(s)	305
Bsc4I	CCNNNNNNNGG	1 cut(s)	274
Bse118I	RCCGGY	1 cut(s)	267
BseBI	CCWGG	1 cut(s)	356
BseGI	GGATG	2 cut(s)	351, 360
BseLI	CCNNNNNNNGG	1 cut(s)	274
BseMII	CTCAG	2 cut(s)	279, 296
BseYI	CCCAGC	1 cut(s)	309
BshFI	GGCC	2 cut(s)	267, 359
BsiHKCI	CYCGRG	1 cut(s)	92
BsiSI	CCGG	1 cut(s)	268
BslI	CCNNNNNNNGG	1 cut(s)	274
BsmAI	GTCTC	1 cut(s)	193
BsnI	GGCC	2 cut(s)	267, 359
BsoBI	CYCGRG	1 cut(s)	92
Bsp143I	GATC	1 cut(s)	291
Bsp1720I	GCTNAGC	1 cut(s)	305
BspACI	CCGC	1 cut(s)	230
BspANI	GGCC	2 cut(s)	267, 359
BspCNI	CTCAG	2 cut(s)	280, 297
BspMI	ACCTGC	1 cut(s)	309
BsrFI	RCCGGY	1 cut(s)	267
BssAI	RCCGGY	1 cut(s)	267
BssMI	GATC	1 cut(s)	291
Bst2UI	CCWGG	1 cut(s)	356
Bst4CI	ACNGT	1 cut(s)	140
BstC8I	GCNNGC	1 cut(s)	269
BstDEI	CTNAG	2 cut(s)	288, 305
BstF5I	GGATG	2 cut(s)	351, 360
BstKTI	GATC	1 cut(s)	294
BstMAI	GTCTC	1 cut(s)	193
BstMBI	GATC	1 cut(s)	291
BstNI	CCWGG	1 cut(s)	356
BstSCI	CCNGG	1 cut(s)	354
BstX2I	RGATCY	1 cut(s)	291
BstYI	RGATCY	1 cut(s)	291
BsuRI	GGCC	2 cut(s)	267, 359
BtrI	CACGTC	1 cut(s)	18
BtsCI	GGATG	2 cut(s)	351, 360
BveI	ACCTGC	1 cut(s)	309
Cac8I	GCNNGC	1 cut(s)	269
Cfr10I	RCCGGY	1 cut(s)	267
Cfr13I	GGNCC	2 cut(s)	88, 265
CseI	GACGC	1 cut(s)	169
Csp6I	GTAC	1 cut(s)	256
CviAII	CATG	1 cut(s)	259
CviJI	RGCY	6 cut(s)	22, 73, 224, 267, 309, 359
CviKI_1	RGCY	6 cut(s)	22, 73, 224, 267, 309, 359
CviQI	GTAC	1 cut(s)	256
DdeI	CTNAG	2 cut(s)	288, 305
DpnI	GATC	1 cut(s)	293
DpnII	GATC	1 cut(s)	291
EaeI	YGGCCR	1 cut(s)	357
Eco47I	GGWCC	1 cut(s)	88
Eco88I	CYCGRG	1 cut(s)	92
EcoRII	CCWGG	1 cut(s)	354
FaeI	CATG	1 cut(s)	262
FatI	CATG	1 cut(s)	258
FauI	CCCGC	1 cut(s)	237
FauNDI	CATATG	1 cut(s)	115
FokI	GGATG	2 cut(s)	338, 347
GsaI	CCCAGC	1 cut(s)	313
HaeIII	GGCC	2 cut(s)	267, 359
HapII	CCGG	1 cut(s)	268
HgaI	GACGC	1 cut(s)	169
Hin1II	CATG	1 cut(s)	262
HinfI	GANTC	1 cut(s)	119
HpaII	CCGG	1 cut(s)	268
Hpy188I	TCNGA	1 cut(s)	132
Hpy188III	TCNNGA	1 cut(s)	334
HpyAV	CCTTC	1 cut(s)	256
HpyCH4III	ACNGT	1 cut(s)	140
HpyCH4IV	ACGT	2 cut(s)	17, 246
HpyF3I	CTNAG	2 cut(s)	288, 305
HpySE526I	ACGT	2 cut(s)	17, 246
Hsp92II	CATG	1 cut(s)	262
KroI	GCCGGC	1 cut(s)	267
KroNI	GCCGGC	1 cut(s)	269
Kzo9I	GATC	1 cut(s)	291
LmnI	GCTCC	1 cut(s)	387
LpnPI	CCDG	6 cut(s)	165, 281, 295, 314, 341, 368
LweI	GCATC	1 cut(s)	336
MaeII	ACGT	2 cut(s)	17, 246
MaeIII	GTNAC	1 cut(s)	283
MalI	GATC	1 cut(s)	293
MboI	GATC	1 cut(s)	291
MboII	GAAGA	3 cut(s)	25, 28, 322
MflI	RGATCY	1 cut(s)	291
MlsI	TGGCCA	1 cut(s)	359
MluCI	AATT	1 cut(s)	250
MluNI	TGGCCA	1 cut(s)	359
MnlI	CCTC	3 cut(s)	88, 101, 374
Mox20I	TGGCCA	1 cut(s)	359
MroNI	GCCGGC	1 cut(s)	267
MscI	TGGCCA	1 cut(s)	359
MseI	TTAA	1 cut(s)	44
Msp20I	TGGCCA	1 cut(s)	359
MspI	CCGG	1 cut(s)	268
MspR9I	CCNGG	1 cut(s)	356
MvaI	CCWGG	1 cut(s)	356
NaeI	GCCGGC	1 cut(s)	269
NdeI	CATATG	1 cut(s)	115
NdeII	GATC	1 cut(s)	291
NgoMIV	GCCGGC	1 cut(s)	267
NlaIII	CATG	1 cut(s)	262
NmuCI	GTSAC	1 cut(s)	283
PaeR7I	CTCGAG	1 cut(s)	92
PcsI	WCGNNNNNNNCGW	1 cut(s)	136
PdiI	GCCGGC	1 cut(s)	269
PfeI	GAWTC	1 cut(s)	119
PsiI	TTATAA	2 cut(s)	194, 243
Psp6I	CCWGG	1 cut(s)	354
PspFI	CCCAGC	1 cut(s)	309
PspGI	CCWGG	1 cut(s)	354
PspPI	GGNCC	2 cut(s)	88, 265
PspXI	VCTCGAGB	1 cut(s)	92
PsuI	RGATCY	1 cut(s)	291
RsaI	GTAC	1 cut(s)	257
RsaNI	GTAC	1 cut(s)	256
SaqAI	TTAA	1 cut(s)	44
Sau3AI	GATC	1 cut(s)	291
Sau96I	GGNCC	2 cut(s)	88, 265
ScrFI	CCNGG	1 cut(s)	356
SetI	ASST	7 cut(s)	20, 75, 93, 237, 249, 303, 311
SfaNI	GCATC	1 cut(s)	336
Sfr274I	CTCGAG	1 cut(s)	92
SinI	GGWCC	1 cut(s)	88
SlaI	CTCGAG	1 cut(s)	92
SmlI	CTYRAG	1 cut(s)	92
SmoI	CTYRAG	1 cut(s)	92
Sse9I	AATT	1 cut(s)	250
SsiI	CCGC	1 cut(s)	230
StyD4I	CCNGG	1 cut(s)	354
TaaI	ACNGT	1 cut(s)	140
TaiI	ACGT	2 cut(s)	20, 249
TaqI	TCGA	1 cut(s)	93
TasI	AATT	1 cut(s)	250
TfiI	GAWTC	1 cut(s)	119
Tru1I	TTAA	1 cut(s)	44
Tru9I	TTAA	1 cut(s)	44
TseFI	GTSAC	1 cut(s)	283
Tsp45I	GTSAC	1 cut(s)	283
TspDTI	ATGAA	4 cut(s)	28, 111, 275, 340
VpaK11BI	GGWCC	1 cut(s)	88
XhoI	CTCGAG	1 cut(s)	92

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.