Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0001152

Physical Location & Seq

Genomic Coordinates Forward (+)

47758950 .. 47760013

Gene Structure 1064 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0362200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 906 bp

ATGTGGCTGTTTTGGAGGGTGTTGAAGTATAGGAACATTGATGGTGAGCTTGTTGGTGTTGTAGAGGACTCATGGGTGCTGAGGCCAGAGCCTGTTTCGGTTACTTGCCATTCGATTAAGGGTGTTAAGGAAGAGTCGAAAAGTGAGATCATGGCTGCATTGTGCAAAGATGTGGAGGGTTTGAGTTTGACACCAGTTGCGACAGAGTCTTCGGCGGCGAGGCTGGCTCTGATTGCTGAGGAGGTGGGCTATGTTGATGTGATTCTGGCGATTGAGAAGTACTTGAGGGATGCAGTTGAGCCATGGTTTTGGATGGGACTTTTGGTGGGAATGGGTTCATTGCTCGCTAAGATTGACGCGGAATGGGGGATGAAGTATAGGCCTCAAGCTTATTCACTTGCCGCGGATTTTATGTACTTAGAGAGGAGGTCAGATTCGAGTTATCCAAGGTTGAGGTGCTTTGATTTGTATAAACTGCATTCTTGGGCGGGAGGGGTGACTGAATTTGGAGATGGCAGGAATCAGGAGAGCACTAGCGAGGCGGTGAATGCTTACCACTCAGCTGCATTGTTGGGATTAGCATATGGAGACACTGATCTTGTGGCCACAGGGTCAATGCTTGCAGCATTGCCAGCTCAAATGTGGTGGCATGTAAGAGAGGGAGATAACATTTATGCACCAGATTACACAAAGGAAAATCGGGTGGTTGGAGTGCTGTGGGCTAATACGAGAGACAGTAATCTTTGGTTTGCACCTGCACAGTGGAGAGAGTGCCTGCTTGGAATCCAGCTGCTGCCCATTGTACCTATCACTGAGGAATTGTTCTCTGATGTTGGCTCTGTTAGGGAACTTGTGAAGTGGACTGAACCAGCTCTTAGTAAAGAAAGTGTTGGGGAAGGATGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0006810 GO:0006811 GO:0006812 GO:0006885 GO:0008150 GO:0012505 GO:0015672 GO:0042592 GO:0044464 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055067 GO:0055080 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_H_Exchanger

Protein Analysis

301

Amino Acids

33.78

Weight (kDa)

4.81

Isoelectric Point (pI)

44.98

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Glyco_hydro81C	PF17652	103 - 301	1.5e-49	Glycosyl hydrolase family 81 C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001152)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g43690 FvH4_7g25211 FvH4_7g25250 FvH4_7g25290 FvH4_7g25310
malus_domestica	MD01G1158700.v1.1 MD01G1158800.v1.1 MD07G1227200.v1.1 MD07G1227600.v1.1
prunus_persica	Prupe.2G257000_v2.0.a1 Prupe.2G257100_v2.0.a1
pyrus_communis	pycom01g17540
rosa_chinensis	RchiOBHm_Chr1g0371191 RchiOBHm_Chr1g0371201 RchiOBHm_Chr1g0371211
rosa_laevigata	RLG00000026978 RLG00000026979 RLG00000026980 RLG00000026981 RLG00000026983 RLG00000036771
rosa_multiflora	Rmu_co8222838.1_g000001 Rmu_sc0000631.1_g000023 Rmu_sc0001018.1_g000042 Rmu_sc0001018.1_g000044 Rmu_sc0001018.1_g000049 Rmu_sc0001018.1_g000050 Rmu_sc0001018.1_g000051 Rmu_sc0008081.1_g000003
rosa_roxburghii	Rroxscaffold_4G00285900 Rroxscaffold_4G00285910
rosa_rugosa	Rorug01G0361700 Rorug01G0361900 Rorug01G0362000 Rorug01G0362200 Rorug05G0460600
rosa_samantha	Rh1AG372000 Rh1AG372200 Rh1AG372300 Rh1BG335100 Rh1BG335500 Rh1BG335700 Rh1BG335800 Rh1CG348600 Rh1CG349000 Rh1CG349100 Rh1CG349200 Rh1DG366500 Rh1DG366900 Rh1DG367000 Rh5BG537300 Rh5CG560800 Rh5DG548900
rosa_wichuraiana	Rw1G032720 Rw1G032730 Rw1G032740 Rw5G047750 Rw5G047880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	763
Acc36I	ACCTGC	1 cut(s)	763
AccII	CGCG	2 cut(s)	359, 404
AciI	CCGC	6 cut(s)	215, 359, 402, 404, 488, 542
AcoI	YGGCCR	1 cut(s)	603
AcsI	RAATTY	1 cut(s)	503
AfaI	GTAC	3 cut(s)	281, 416, 804
AgsI	TTSAA	1 cut(s)	25
AluBI	AGCT	6 cut(s)	49, 389, 563, 635, 790, 872
AluI	AGCT	6 cut(s)	49, 389, 563, 635, 790, 872
Alw21I	GWGCWC	1 cut(s)	533
Alw26I	GTCTC	2 cut(s)	582, 726
AlwNI	CAGNNNCTG	2 cut(s)	92, 793
AoxI	GGCC	3 cut(s)	83, 380, 603
ApeKI	GCWGC	5 cut(s)	155, 563, 623, 790, 793
ApoI	RAATTY	1 cut(s)	503
ArsI	GACNNNNNNTTYG	2 cut(s)	193, 225
Asp700I	GAANNNNTTC	1 cut(s)	334
AsuHPI	GGTGA	3 cut(s)	56, 508, 556
BalI	TGGCCA	1 cut(s)	605
BbsI	GAAGAC	1 cut(s)	201
Bbv12I	GWGCWC	1 cut(s)	533
BbvCI	CCTCAGC	2 cut(s)	80, 237
BbvI	GCAGC	5 cut(s)	142, 550, 635, 777, 780
BccI	CCATC	4 cut(s)	35, 307, 506, 894
BcoDI	GTCTC	2 cut(s)	582, 726
BfaI	CTAG	1 cut(s)	534
BfuAI	ACCTGC	1 cut(s)	763
BisI	GCNGC	7 cut(s)	156, 216, 402, 564, 624, 791, 794
BlsI	GCNGC	7 cut(s)	157, 217, 403, 565, 625, 792, 795
BmcAI	AGTACT	1 cut(s)	281
BmsI	GCATC	1 cut(s)	280
BpiI	GAAGAC	1 cut(s)	201
BplI	GAGNNNNNCTC	2 cut(s)	211, 243
Bpu10I	CCTNAGC	2 cut(s)	80, 237
BpuEI	CTTGAG	2 cut(s)	304, 369
BsaJI	CCNNGG	3 cut(s)	302, 402, 446
Bse1I	ACTGG	1 cut(s)	194
Bse3DI	GCAATG	2 cut(s)	338, 626
BseDI	CCNNGG	3 cut(s)	302, 402, 446
BseGI	GGATG	4 cut(s)	295, 318, 375, 905
BseMI	GCAATG	2 cut(s)	338, 626
BseMII	CTCAG	4 cut(s)	71, 228, 573, 804
BseNI	ACTGG	1 cut(s)	194
BseRI	GAGGAG	2 cut(s)	254, 439
BseXI	GCAGC	5 cut(s)	142, 550, 635, 777, 780
BsgI	GTGCAG	1 cut(s)	741
Bsh1236I	CGCG	2 cut(s)	359, 404
BshFI	GGCC	3 cut(s)	85, 382, 605
BsiHKAI	GWGCWC	1 cut(s)	533
BslFI	GGGAC	1 cut(s)	330
BsmAI	GTCTC	2 cut(s)	582, 726
BsmFI	GGGAC	1 cut(s)	330
BsmI	GAATGC	2 cut(s)	478, 553
BsnI	GGCC	3 cut(s)	85, 382, 605
Bsp1286I	GDGCHC	1 cut(s)	533
Bsp143I	GATC	2 cut(s)	147, 595
Bsp19I	CCATGG	1 cut(s)	302
BspACI	CCGC	6 cut(s)	215, 359, 402, 404, 488, 542
BspANI	GGCC	3 cut(s)	85, 382, 605
BspCNI	CTCAG	4 cut(s)	72, 229, 572, 805
BspFNI	CGCG	2 cut(s)	359, 404
BspMI	ACCTGC	1 cut(s)	763
BsrDI	GCAATG	2 cut(s)	338, 626
BsrI	ACTGG	1 cut(s)	194
BssECI	CCNNGG	3 cut(s)	302, 402, 446
BssMI	GATC	2 cut(s)	147, 595
BssT1I	CCWWGG	2 cut(s)	302, 446
Bst4CI	ACNGT	2 cut(s)	737, 762
Bst6I	CTCTTC	1 cut(s)	126
BstC8I	GCNNGC	5 cut(s)	225, 345, 621, 633, 776
BstDEI	CTNAG	7 cut(s)	80, 237, 348, 418, 559, 813, 875
BstDSI	CCRYGG	2 cut(s)	302, 402
BstF5I	GGATG	4 cut(s)	295, 318, 375, 905
BstFNI	CGCG	2 cut(s)	359, 404
BstKTI	GATC	2 cut(s)	150, 598
BstMAI	GTCTC	2 cut(s)	582, 726
BstMBI	GATC	2 cut(s)	147, 595
BstMWI	GCNNNNNNNGC	4 cut(s)	224, 233, 548, 632
BstNSI	RCATGY	1 cut(s)	653
BstUI	CGCG	2 cut(s)	359, 404
BstV1I	GCAGC	5 cut(s)	142, 550, 635, 777, 780
BstV2I	GAAGAC	1 cut(s)	201
BstXI	CCANNNNNNTGG	1 cut(s)	309
BsuRI	GGCC	3 cut(s)	85, 382, 605
BtgI	CCRYGG	2 cut(s)	302, 402
BtsCI	GGATG	4 cut(s)	295, 318, 375, 905
BtsIMutI	CAGTG	3 cut(s)	591, 767, 810
BveI	ACCTGC	1 cut(s)	763
Cac8I	GCNNGC	5 cut(s)	225, 345, 621, 633, 776
CaiI	CAGNNNCTG	2 cut(s)	92, 793
Cfr42I	CCGCGG	1 cut(s)	405
CseI	GACGC	1 cut(s)	365
Csp6I	GTAC	3 cut(s)	280, 415, 803
CspCI	CAANNNNNGTGG	2 cut(s)	626, 661
CviAII	CATG	4 cut(s)	72, 151, 303, 650
CviQI	GTAC	3 cut(s)	280, 415, 803
DdeI	CTNAG	7 cut(s)	80, 237, 348, 418, 559, 813, 875
DpnI	GATC	2 cut(s)	149, 597
DpnII	GATC	2 cut(s)	147, 595
EaeI	YGGCCR	1 cut(s)	603
Eam1104I	CTCTTC	1 cut(s)	126
EarI	CTCTTC	1 cut(s)	126
Eco130I	CCWWGG	2 cut(s)	302, 446
Eco147I	AGGCCT	1 cut(s)	382
EcoT14I	CCWWGG	2 cut(s)	302, 446
ErhI	CCWWGG	2 cut(s)	302, 446
FaeI	CATG	4 cut(s)	75, 154, 306, 653
FaqI	GGGAC	1 cut(s)	330
FatI	CATG	4 cut(s)	71, 150, 302, 649
FauI	CCCGC	1 cut(s)	481
FauNDI	CATATG	1 cut(s)	583
Fnu4HI	GCNGC	7 cut(s)	156, 216, 402, 564, 624, 791, 794
FokI	GGATG	3 cut(s)	302, 325, 382
Fsp4HI	GCNGC	7 cut(s)	156, 216, 402, 564, 624, 791, 794
FspBI	CTAG	1 cut(s)	534
GluI	GCNGC	7 cut(s)	156, 216, 402, 564, 624, 791, 794
HaeIII	GGCC	3 cut(s)	85, 382, 605
HgaI	GACGC	1 cut(s)	365
Hin1II	CATG	4 cut(s)	75, 154, 306, 653
HindIII	AAGCTT	1 cut(s)	387
HinfI	GANTC	7 cut(s)	68, 134, 206, 262, 434, 520, 783
HphI	GGTGA	3 cut(s)	56, 508, 556
Hpy166II	GTNNAC	1 cut(s)	861
Hpy188I	TCNGA	3 cut(s)	231, 433, 829
Hpy188III	TCNNGA	1 cut(s)	524
Hpy8I	GTNNAC	1 cut(s)	861
HpyAV	CCTTC	1 cut(s)	890
HpyCH4III	ACNGT	2 cut(s)	737, 762
HpyCH4V	TGCA	9 cut(s)	158, 165, 293, 478, 566, 623, 677, 752, 758
HpyF10VI	GCNNNNNNNGC	4 cut(s)	224, 233, 548, 632
HpyF3I	CTNAG	7 cut(s)	80, 237, 348, 418, 559, 813, 875
Hsp92II	CATG	4 cut(s)	75, 154, 306, 653
KspI	CCGCGG	1 cut(s)	405
Kzo9I	GATC	2 cut(s)	147, 595
Lsp1109I	GCAGC	5 cut(s)	142, 550, 635, 777, 780
LweI	GCATC	1 cut(s)	280
MaeI	CTAG	1 cut(s)	534
MaeIII	GTNAC	2 cut(s)	100, 496
MalI	GATC	2 cut(s)	149, 597
MboI	GATC	2 cut(s)	147, 595
MboII	GAAGA	2 cut(s)	143, 201
MhlI	GDGCHC	1 cut(s)	533
MlsI	TGGCCA	1 cut(s)	605
MluCI	AATT	2 cut(s)	503, 818
MluNI	TGGCCA	1 cut(s)	605
MlyI	GAGTC	3 cut(s)	62, 143, 215
MmeI	TCCRAC	1 cut(s)	688
Mox20I	TGGCCA	1 cut(s)	605
MroXI	GAANNNNTTC	1 cut(s)	334
MscI	TGGCCA	1 cut(s)	605
MseI	TTAA	2 cut(s)	117, 126
Msp20I	TGGCCA	1 cut(s)	605
MspA1I	CMGCKG	3 cut(s)	404, 563, 790
Mva1269I	GAATGC	2 cut(s)	478, 553
MvnI	CGCG	2 cut(s)	359, 404
MwoI	GCNNNNNNNGC	4 cut(s)	224, 233, 548, 632
NcoI	CCATGG	1 cut(s)	302
NdeI	CATATG	1 cut(s)	583
NdeII	GATC	2 cut(s)	147, 595
NlaIII	CATG	4 cut(s)	75, 154, 306, 653
NmuCI	GTSAC	1 cut(s)	496
NspI	RCATGY	1 cut(s)	653
PaqCI	CACCTGC	1 cut(s)	763
PceI	AGGCCT	1 cut(s)	382
PctI	GAATGC	2 cut(s)	478, 553
PdmI	GAANNNNTTC	1 cut(s)	334
PfeI	GAWTC	4 cut(s)	262, 434, 520, 783
PflFI	GACNNNGTC	1 cut(s)	205
PkrI	GCNGC	7 cut(s)	157, 217, 403, 565, 625, 792, 795
PleI	GAGTC	3 cut(s)	62, 142, 214
PpsI	GAGTC	3 cut(s)	62, 142, 214
PstNI	CAGNNNCTG	2 cut(s)	92, 793
PsyI	GACNNNGTC	1 cut(s)	205
PvuII	CAGCTG	2 cut(s)	563, 790
RsaI	GTAC	3 cut(s)	281, 416, 804
RsaNI	GTAC	3 cut(s)	280, 415, 803
SacII	CCGCGG	1 cut(s)	405
SaqAI	TTAA	2 cut(s)	117, 126
SatI	GCNGC	7 cut(s)	156, 216, 402, 564, 624, 791, 794
Sau3AI	GATC	2 cut(s)	147, 595
ScaI	AGTACT	1 cut(s)	281
SchI	GAGTC	3 cut(s)	62, 143, 215
SduI	GDGCHC	1 cut(s)	533
SfaNI	GCATC	1 cut(s)	280
Sfr303I	CCGCGG	1 cut(s)	405
SgrBI	CCGCGG	1 cut(s)	405
SmlI	CTYRAG	2 cut(s)	283, 384
SmoI	CTYRAG	2 cut(s)	283, 384
Sse9I	AATT	2 cut(s)	503, 818
SseBI	AGGCCT	1 cut(s)	382
SsiI	CCGC	6 cut(s)	215, 359, 402, 404, 488, 542
SspMI	CTAG	1 cut(s)	534
StuI	AGGCCT	1 cut(s)	382
StyI	CCWWGG	2 cut(s)	302, 446
TaaI	ACNGT	2 cut(s)	737, 762
TaqI	TCGA	3 cut(s)	113, 137, 437
TasI	AATT	2 cut(s)	503, 818
TatI	WGTACW	2 cut(s)	279, 414
TauI	GCSGC	2 cut(s)	218, 404
TfiI	GAWTC	4 cut(s)	262, 434, 520, 783
Tru1I	TTAA	2 cut(s)	117, 126
Tru9I	TTAA	2 cut(s)	117, 126
TscAI	CASTG	3 cut(s)	598, 767, 817
TseFI	GTSAC	1 cut(s)	496
TseI	GCWGC	5 cut(s)	155, 563, 623, 790, 793
Tsp45I	GTSAC	1 cut(s)	496
TspDTI	ATGAA	2 cut(s)	327, 386
TspRI	CASTG	3 cut(s)	598, 767, 817
Tth111I	GACNNNGTC	1 cut(s)	205
XapI	RAATTY	1 cut(s)	503
XceI	RCATGY	1 cut(s)	653
XcmI	CCANNNNNNNNNTGG	1 cut(s)	639
XmnI	GAANNNNTTC	1 cut(s)	334
XspI	CTAG	1 cut(s)	534
ZrmI	AGTACT	1 cut(s)	281

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.