Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0001152

Physical Location & Seq

Genomic Coordinates Forward (+)

19273585 .. 19274190

Gene Structure 606 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g25211.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

ATGGTTGGCACCAGTTTGACTGTTGCGATACGACAATTTAACAACAACGTGCAAGAACATTCACCTTGTACAGTTGGGATACTAGTTGAAAGAGGGTTGCCCATGCAGCTTACCTTGTCACATTTCTCATACAATGTGGCTACATTTTTCATCGGCGGACCAGATGACCGCGAGGTGTTGGCCTTAGCGACACGTATGTTAGGCAACCGGAACGTTGTCCTCACAGTGTACAGAATTGTTGTATTGTGGAAAAAATTAAGCGAGATTAAAGATGAGAAGATGGAGATCAGGCTGGATGAGTCGATGGTGGATGAGTTTAAGCTGAGGAATAACATGAATGACTGCTTGAATTGGCGAGATATCGAGGTTGAGGACACTGTACAGGCTATGGATACAATTTTGAACTCGCGGGGGGAATATGATCTAGTAATGGTCGGAAGGCGTCATGCGGATAGTTCATTGAGTAATGAGGAAATGTCAGAATTCGTACATTATCCGGAGCTGGGAATGATTGGCGACATGCTTGCATCTTCAGAATTCTGTGGTGGGATGGTGAATGTTTTGGTGTTGCAAGAAAGCATGGAAGTTAGTAGAGATTATGGGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0006810 GO:0006811 GO:0006812 GO:0006885 GO:0008150 GO:0012505 GO:0015672 GO:0042592 GO:0044464 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055067 GO:0055080 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_H_Exchanger

Protein Analysis

202

Amino Acids

22.83

Weight (kDa)

4.68

Isoelectric Point (pI)

41.86

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CHX17_C	PF23259	44 - 192	2.4e-08	Plant cation/H(+) antiporter, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001152)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g43690 FvH4_7g25211 FvH4_7g25250 FvH4_7g25290 FvH4_7g25310
malus_domestica	MD01G1158700.v1.1 MD01G1158800.v1.1 MD07G1227200.v1.1 MD07G1227600.v1.1
prunus_persica	Prupe.2G257000_v2.0.a1 Prupe.2G257100_v2.0.a1
pyrus_communis	pycom01g17540
rosa_chinensis	RchiOBHm_Chr1g0371191 RchiOBHm_Chr1g0371201 RchiOBHm_Chr1g0371211
rosa_laevigata	RLG00000026978 RLG00000026979 RLG00000026980 RLG00000026981 RLG00000026983 RLG00000036771
rosa_multiflora	Rmu_co8222838.1_g000001 Rmu_sc0000631.1_g000023 Rmu_sc0001018.1_g000042 Rmu_sc0001018.1_g000044 Rmu_sc0001018.1_g000049 Rmu_sc0001018.1_g000050 Rmu_sc0001018.1_g000051 Rmu_sc0008081.1_g000003
rosa_roxburghii	Rroxscaffold_4G00285900 Rroxscaffold_4G00285910
rosa_rugosa	Rorug01G0361700 Rorug01G0361900 Rorug01G0362000 Rorug01G0362200 Rorug05G0460600
rosa_samantha	Rh1AG372000 Rh1AG372200 Rh1AG372300 Rh1BG335100 Rh1BG335500 Rh1BG335700 Rh1BG335800 Rh1CG348600 Rh1CG349000 Rh1CG349100 Rh1CG349200 Rh1DG366500 Rh1DG366900 Rh1DG367000 Rh5BG537300 Rh5CG560800 Rh5DG548900
rosa_wichuraiana	Rw1G032720 Rw1G032730 Rw1G032740 Rw5G047750 Rw5G047880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	8
AccII	CGCG	2 cut(s)	171, 409
AccIII	TCCGGA	1 cut(s)	496
AciI	CCGC	4 cut(s)	156, 169, 409, 449
AclI	AACGTT	1 cut(s)	213
AcsI	RAATTY	2 cut(s)	482, 536
AcuI	CTGAAG	1 cut(s)	516
AcyI	GRCGYC	1 cut(s)	442
AfaI	GTAC	4 cut(s)	70, 230, 381, 489
AfiI	CCNNNNNNNGG	1 cut(s)	503
AflIII	ACRYGT	1 cut(s)	191
AgsI	TTSAA	3 cut(s)	89, 349, 403
AhlI	ACTAGT	1 cut(s)	82
AluBI	AGCT	3 cut(s)	109, 322, 502
AluI	AGCT	3 cut(s)	109, 322, 502
Aor13HI	TCCGGA	1 cut(s)	496
AoxI	GGCC	1 cut(s)	180
ApeKI	GCWGC	1 cut(s)	106
ApoI	RAATTY	2 cut(s)	482, 536
AspS9I	GGNCC	1 cut(s)	158
AsuHPI	GGTGA	2 cut(s)	54, 565
AvaII	GGWCC	1 cut(s)	158
BanI	GGYRCC	1 cut(s)	8
BbvCI	CCTCAGC	1 cut(s)	323
BbvI	GCAGC	1 cut(s)	118
BccI	CCATC	3 cut(s)	274, 298, 544
BcgI	CGANNNNNNTGC	2 cut(s)	506, 540
BciVI	GTATCC	2 cut(s)	72, 385
BcuI	ACTAGT	1 cut(s)	82
BfaI	CTAG	2 cut(s)	83, 425
BfuI	GTATCC	2 cut(s)	72, 385
BisI	GCNGC	1 cut(s)	107
BlsI	GCNGC	1 cut(s)	108
Bme18I	GGWCC	1 cut(s)	158
BmgT120I	GGNCC	1 cut(s)	158
BmiI	GGNNCC	1 cut(s)	10
BmsI	GCATC	1 cut(s)	536
Bpu10I	CCTNAGC	2 cut(s)	184, 323
BsaAI	YACGTR	1 cut(s)	194
BsaBI	GATNNNNATC	1 cut(s)	284
BsaHI	GRCGYC	1 cut(s)	442
BsaWI	WCCGGW	2 cut(s)	207, 496
Bsc4I	CCNNNNNNNGG	1 cut(s)	503
Bse1I	ACTGG	1 cut(s)	12
Bse8I	GATNNNNATC	1 cut(s)	284
BseAI	TCCGGA	1 cut(s)	496
BseGI	GGATG	3 cut(s)	301, 316, 555
BseJI	GATNNNNATC	1 cut(s)	284
BseLI	CCNNNNNNNGG	1 cut(s)	503
BseMII	CTCAG	1 cut(s)	314
BseNI	ACTGG	1 cut(s)	12
BseXI	GCAGC	1 cut(s)	118
BseYI	CCCAGC	1 cut(s)	502
Bsh1236I	CGCG	2 cut(s)	171, 409
BshFI	GGCC	1 cut(s)	182
BshNI	GGYRCC	1 cut(s)	8
BsiSI	CCGG	2 cut(s)	208, 497
BslI	CCNNNNNNNGG	1 cut(s)	503
BsnI	GGCC	1 cut(s)	182
Bsp13I	TCCGGA	1 cut(s)	496
Bsp1407I	TGTACA	3 cut(s)	68, 228, 379
Bsp143I	GATC	2 cut(s)	285, 421
BspACI	CCGC	4 cut(s)	156, 169, 409, 449
BspANI	GGCC	1 cut(s)	182
BspCNI	CTCAG	1 cut(s)	315
BspEI	TCCGGA	1 cut(s)	496
BspFNI	CGCG	2 cut(s)	171, 409
BspLI	GGNNCC	1 cut(s)	10
BspT107I	GGYRCC	1 cut(s)	8
BsrGI	TGTACA	3 cut(s)	68, 228, 379
BsrI	ACTGG	1 cut(s)	12
BssMI	GATC	2 cut(s)	285, 421
BssNI	GRCGYC	1 cut(s)	442
Bst4CI	ACNGT	4 cut(s)	22, 73, 226, 379
BstACI	GRCGYC	1 cut(s)	442
BstAUI	TGTACA	3 cut(s)	68, 228, 379
BstBAI	YACGTR	1 cut(s)	194
BstC8I	GCNNGC	1 cut(s)	525
BstDEI	CTNAG	2 cut(s)	184, 323
BstF5I	GGATG	3 cut(s)	301, 316, 555
BstFNI	CGCG	2 cut(s)	171, 409
BstKTI	GATC	2 cut(s)	288, 424
BstMBI	GATC	2 cut(s)	285, 421
BstMWI	GCNNNNNNNGC	1 cut(s)	106
BstNSI	RCATGY	1 cut(s)	523
BstUI	CGCG	2 cut(s)	171, 409
BstV1I	GCAGC	1 cut(s)	118
BsuI	GTATCC	2 cut(s)	72, 385
BsuRI	GGCC	1 cut(s)	182
BtsCI	GGATG	3 cut(s)	301, 316, 555
BtsIMutI	CAGTG	2 cut(s)	231, 375
Cac8I	GCNNGC	1 cut(s)	525
Cfr13I	GGNCC	1 cut(s)	158
CseI	GACGC	1 cut(s)	431
Csp6I	GTAC	4 cut(s)	69, 229, 380, 488
CviAII	CATG	5 cut(s)	103, 334, 446, 520, 580
CviJI	RGCY	7 cut(s)	109, 140, 182, 292, 322, 386, 502
CviKI_1	RGCY	7 cut(s)	109, 140, 182, 292, 322, 386, 502
CviQI	GTAC	4 cut(s)	69, 229, 380, 488
DdeI	CTNAG	2 cut(s)	184, 323
DpnI	GATC	2 cut(s)	287, 423
DpnII	GATC	2 cut(s)	285, 421
EciI	GGCGGA	1 cut(s)	171
Eco32I	GATATC	1 cut(s)	361
Eco47I	GGWCC	1 cut(s)	158
Eco57I	CTGAAG	1 cut(s)	516
EcoRI	GAATTC	2 cut(s)	482, 536
EcoRV	GATATC	1 cut(s)	361
FaeI	CATG	5 cut(s)	106, 337, 449, 523, 583
FatI	CATG	5 cut(s)	102, 333, 445, 519, 579
FauI	CCCGC	1 cut(s)	402
Fnu4HI	GCNGC	1 cut(s)	107
FokI	GGATG	3 cut(s)	308, 323, 562
Fsp4HI	GCNGC	1 cut(s)	107
FspBI	CTAG	2 cut(s)	83, 425
GluI	GCNGC	1 cut(s)	107
GsaI	CCCAGC	1 cut(s)	506
HaeIII	GGCC	1 cut(s)	182
HapII	CCGG	2 cut(s)	208, 497
HgaI	GACGC	1 cut(s)	431
Hin1I	GRCGYC	1 cut(s)	442
Hin1II	CATG	5 cut(s)	106, 337, 449, 523, 583
HinfI	GANTC	1 cut(s)	299
HpaII	CCGG	2 cut(s)	208, 497
HphI	GGTGA	2 cut(s)	54, 565
Hpy166II	GTNNAC	1 cut(s)	229
Hpy188I	TCNGA	3 cut(s)	437, 481, 535
Hpy188III	TCNNGA	1 cut(s)	497
Hpy8I	GTNNAC	1 cut(s)	229
HpyAV	CCTTC	1 cut(s)	432
HpyCH4III	ACNGT	4 cut(s)	22, 73, 226, 379
HpyCH4IV	ACGT	3 cut(s)	48, 193, 213
HpyCH4V	TGCA	4 cut(s)	52, 106, 527, 571
HpyF10VI	GCNNNNNNNGC	1 cut(s)	106
HpyF3I	CTNAG	2 cut(s)	184, 323
HpySE526I	ACGT	3 cut(s)	48, 193, 213
Hsp92I	GRCGYC	1 cut(s)	442
Hsp92II	CATG	5 cut(s)	106, 337, 449, 523, 583
Kpn2I	TCCGGA	1 cut(s)	496
Kzo9I	GATC	2 cut(s)	285, 421
LmnI	GCTCC	1 cut(s)	499
LpnPI	CCDG	8 cut(s)	25, 174, 221, 274, 278, 368, 488, 510
Lsp1109I	GCAGC	1 cut(s)	118
LweI	GCATC	1 cut(s)	536
MaeI	CTAG	2 cut(s)	83, 425
MaeII	ACGT	3 cut(s)	48, 193, 213
MaeIII	GTNAC	1 cut(s)	117
MalI	GATC	2 cut(s)	287, 423
MboI	GATC	2 cut(s)	285, 421
MboII	GAAGA	2 cut(s)	289, 522
MluCI	AATT	7 cut(s)	35, 234, 254, 349, 396, 482, 536
MlyI	GAGTC	1 cut(s)	308
MmeI	TCCRAC	1 cut(s)	415
MnlI	CCTC	7 cut(s)	86, 166, 230, 318, 358, 364, 463
MroI	TCCGGA	1 cut(s)	496
MseI	TTAA	4 cut(s)	39, 257, 267, 318
MspI	CCGG	2 cut(s)	208, 497
MvnI	CGCG	2 cut(s)	171, 409
MwoI	GCNNNNNNNGC	1 cut(s)	106
NdeII	GATC	2 cut(s)	285, 421
NlaIII	CATG	5 cut(s)	106, 337, 449, 523, 583
NlaIV	GGNNCC	1 cut(s)	10
NmuCI	GTSAC	1 cut(s)	117
NspI	RCATGY	1 cut(s)	523
PkrI	GCNGC	1 cut(s)	108
PleI	GAGTC	1 cut(s)	307
PpsI	GAGTC	1 cut(s)	307
Ppu21I	YACGTR	1 cut(s)	194
Psp1406I	AACGTT	1 cut(s)	213
PspFI	CCCAGC	1 cut(s)	502
PspN4I	GGNNCC	1 cut(s)	10
PspPI	GGNCC	1 cut(s)	158
RsaI	GTAC	4 cut(s)	70, 230, 381, 489
RsaNI	GTAC	4 cut(s)	69, 229, 380, 488
SaqAI	TTAA	4 cut(s)	39, 257, 267, 318
SatI	GCNGC	1 cut(s)	107
Sau3AI	GATC	2 cut(s)	285, 421
Sau96I	GGNCC	1 cut(s)	158
SchI	GAGTC	1 cut(s)	308
SfaNI	GCATC	1 cut(s)	536
SinI	GGWCC	1 cut(s)	158
SpeI	ACTAGT	1 cut(s)	82
Sse9I	AATT	7 cut(s)	35, 234, 254, 349, 396, 482, 536
SsiI	CCGC	4 cut(s)	156, 169, 409, 449
SspMI	CTAG	2 cut(s)	83, 425
TaaI	ACNGT	4 cut(s)	22, 73, 226, 379
TaiI	ACGT	3 cut(s)	51, 196, 216
TaqI	TCGA	2 cut(s)	302, 363
TasI	AATT	7 cut(s)	35, 234, 254, 349, 396, 482, 536
TatI	WGTACW	3 cut(s)	68, 228, 379
Tru1I	TTAA	4 cut(s)	39, 257, 267, 318
Tru9I	TTAA	4 cut(s)	39, 257, 267, 318
TscAI	CASTG	2 cut(s)	231, 382
TseFI	GTSAC	1 cut(s)	117
TseI	GCWGC	1 cut(s)	106
Tsp45I	GTSAC	1 cut(s)	117
TspDTI	ATGAA	3 cut(s)	139, 350, 447
TspRI	CASTG	2 cut(s)	231, 382
VpaK11BI	GGWCC	1 cut(s)	158
XapI	RAATTY	2 cut(s)	482, 536
XceI	RCATGY	1 cut(s)	523
XspI	CTAG	2 cut(s)	83, 425

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.