Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0001152

Physical Location & Seq

Genomic Coordinates Forward (+)

47139758 .. 47142603

Gene Structure 2846 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG335800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2397 bp

ATGGCCAACGCAAGCAACACCACCCAATCCATCAACCCTGGGATATCTGGTCCACCAGAGTTTTGTATATCTTCCCCGCTGGCCAGTGGCTTCAGAAGCATTTGGTATGACCGTTATCACCTAGACCATCCATTGACGCTGACAATGGCTAAAATCATGCTACTCGTTGTTACCTCGCAAGTGCTTCATTGTTTTCTGAAGCCACTGGGACAAACTAAATTTGTCTGCAATCTTCTGGCTGGCATCATCTTGGGGCCATCTGTGATAGGGAACAACAAGCATTTTAGGGACACCCTATTTGGAGAAAAAGTACAGTTTCCGGTGTTTGACGTAATAGCTCAAATGGGTGTAGTATACTCTCTGTTCCTAACTGCAGTGAAACTTGACCTGGGCATGCTCAAAAGGACGGCAAAGACTTCCTGGAAGATTTTTCTAGCAAGCCTCCTTTGTCCTACAGTAGTCTTCTTCAGCTTCGTTTACCCACTAGCCGGCGCAGTTCCTGGATTCAGAGGAGGAAAAGTCATGCTCTTCTGGACTACGAGTTCTTTATCTTTCACTTATTTCCCAGTCATAGCTCAAGCATTGGATGAACTCAACCTTTTGACTTCAGAGTTGGGCCAACTTGCCTTGTCTGCCTCAATGCTCAACGATGCACTGCAACGGTTCTTAACAGCATTGAACGTTGTAGTTATGCAAGAAAAAGTAATATATTCAATTGGGATTATCTTTTCCTTATTTGCGTTGGTAATTTTCACTTTGTATGTTGCACGCCCACTTATGCTATTTACAGTTAAGAATACGCCAGAAGGATACCAGCCGAAGGAAATTTATGTAGTTGCAATACAACTTGGAGTTCTAGTCATGGCCTTTATGTCTGACGCCATAGGCATGAGCCATATGGCTGGTCCTATAATCCTGGGGTTGGCCGTACCAGATGGACAACTTGGTGCAACATTAATAGCCAAGACCGAATACTTGGTCTCCGAAGTCTTTCTGCCACTGTTCTTTTTCCGAATTGGCACCAGCATAGATATGTACAAGATTAGCCGTTGGGTGAGTTTTACCAAACTTCAGGCTATCATTACAGCGTTTTATGCTGCGAAGACTATGGGAATTACAATGGCTGGATTATTTTCCAAAATTAGCTTCAAAAACAGTCTCGTACTCAGCATGATGATGAATATCAAGGGTATACTGGAGCTTATTCTTTATAATGGATGGTTGTCCATGAAGCTTATAGATGAACAATTTTTTGCCCAAATGGTGTTCTCTCTACTGGCGATGACCATGCTTGTAACCCCAATGGTACGATTCTCGTACATTCCTCCTATTTGGGTTGGATCAAAAACCAATGGTCCACAGGTCAAACACATTCAATCAATGGCAAGTAAGTCAGAAACATTTCGCATTCTCTGCTGTGTCCACAATGAAGAAAGTGTCCACAGCATCATTACACTCCTGGAAGCCTCAAATCCAACAGAAGCGAACCCCATCACTGCCTATGTTGTCCACGCACTCCACTACATTGGCCGTGCTGCACCAGTACTAGTCCCTTACAAGAAGCATAAAAAGAAATTTAAGCGGTCAGATACAGCAAGTGATCAAATCGTTCAAGCCTTTGAGAATTACTCAAAAAACTCTGGAGGACCAGTCTCAATTCAAGCCTACACTATGGTCAATCCCTACAAATACATGCACCAGACCATTTTCCGTCTCGCTCAGGACCAGCTAGTACCTCTGATCATCATTCCATTCCATGAAAATCACCAGTCTCTTGTTGACTCCAATATGACTGGTCCGATACGCCAATTCAACCTTAATGTTCAGGCATATTCTCCATGCACAGTGGGAATACTAGTTGATAGAGGCTCGCATTCTCGGATGAGCTTTTCGAGTTTCTTCTACAACATTGCTGTTTTTTTCATTGGCGGACCAGATGACCGCGAGGCATTAGCCTACACTTCACGCATGTGTGACAACCCAGAAGTGGAGCTGACGGTGTTCAGGATAATTGTGCGAATCAATAAATCAAAAGGTATAGAAGAGGATACAGAGTTCAAGCTTGACGAGTCATTGGTTCAGGAGTTTAAGCTACGGAACCTTGGGAATGATCGATTGAATTGGCATGACATCGAGGTGGATGACTGGGTACAGGTTATGACTGCCATTAGTAGCTCGCAAGGACACTATGACCTTGTGATGGTTGGGAAGCGACATTCAGATATATCTTTGAGGGATGAAGAAATGGTAGAGTTCGTGCAAAATTCAGAGCTGGGAGTGATTGGCGACATGCTTGCTTCATCAGATTTCTGTGGTGGAACAGTGAATGTGTTAGTGATGCAAGAGAGTAGGGACTTGGGAATTGGAGCTTTTCGTTGTGACTCCTTGAAAAGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0006810 GO:0006811 GO:0006812 GO:0006885 GO:0008150 GO:0012505 GO:0015672 GO:0042592 GO:0044464 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055067 GO:0055080 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_H_Exchanger

Protein Analysis

798

Amino Acids

89.05

Weight (kDa)

7.61

Isoelectric Point (pI)

35.61

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Na_H_Exchanger	PF00999	64 - 436	2.1e-36	Sodium/hydrogen exchanger, transmembrane
CHX17_C	PF23259	637 - 782	1.2e-08	Plant cation/H(+) antiporter, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0001152)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g43690 FvH4_7g25211 FvH4_7g25250 FvH4_7g25290 FvH4_7g25310
malus_domestica	MD01G1158700.v1.1 MD01G1158800.v1.1 MD07G1227200.v1.1 MD07G1227600.v1.1
prunus_persica	Prupe.2G257000_v2.0.a1 Prupe.2G257100_v2.0.a1
pyrus_communis	pycom01g17540
rosa_chinensis	RchiOBHm_Chr1g0371191 RchiOBHm_Chr1g0371201 RchiOBHm_Chr1g0371211
rosa_laevigata	RLG00000026978 RLG00000026979 RLG00000026980 RLG00000026981 RLG00000026983 RLG00000036771
rosa_multiflora	Rmu_co8222838.1_g000001 Rmu_sc0000631.1_g000023 Rmu_sc0001018.1_g000042 Rmu_sc0001018.1_g000044 Rmu_sc0001018.1_g000049 Rmu_sc0001018.1_g000050 Rmu_sc0001018.1_g000051 Rmu_sc0008081.1_g000003
rosa_roxburghii	Rroxscaffold_4G00285900 Rroxscaffold_4G00285910
rosa_rugosa	Rorug01G0361700 Rorug01G0361900 Rorug01G0362000 Rorug01G0362200 Rorug05G0460600
rosa_samantha	Rh1AG372000 Rh1AG372200 Rh1AG372300 Rh1BG335100 Rh1BG335500 Rh1BG335700 Rh1BG335800 Rh1CG348600 Rh1CG349000 Rh1CG349100 Rh1CG349200 Rh1DG366500 Rh1DG366900 Rh1DG367000 Rh5BG537300 Rh5CG560800 Rh5DG548900
rosa_wichuraiana	Rw1G032720 Rw1G032730 Rw1G032740 Rw5G047750 Rw5G047880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1212
AccB1I	GGYRCC	1 cut(s)	1019
AccI	GTMKAC	2 cut(s)	354, 1192
AccII	CGCG	1 cut(s)	1944
AciI	CCGC	4 cut(s)	77, 1582, 1929, 1942
AclI	AACGTT	1 cut(s)	681
AclWI	GGATC	1 cut(s)	1348
AcoI	YGGCCR	4 cut(s)	3, 81, 924, 1528
AcsI	RAATTY	4 cut(s)	218, 825, 1574, 2263
AcuI	CTGAAG	5 cut(s)	76, 218, 451, 591, 1055
AcyI	GRCGYC	1 cut(s)	879
AfaI	GTAC	9 cut(s)	312, 930, 1037, 1164, 1308, 1319, 1545, 1734, 2151
AfiI	CCNNNNNNNGG	5 cut(s)	488, 820, 922, 1987, 2200
AhlI	ACTAGT	2 cut(s)	1546, 1855
AjnI	CCWGG	6 cut(s)	37, 387, 419, 499, 915, 1458
AjuI	GAANNNNNNNTTGG	2 cut(s)	1130, 1162
AleI	CACNNNNGTG	1 cut(s)	1969
AloI	GAACNNNNNNTCC	4 cut(s)	526, 558, 2039, 2071
Alw26I	GTCTC	5 cut(s)	985, 1163, 1657, 1718, 1776
AlwI	GGATC	1 cut(s)	1348
AlwNI	CAGNNNCTG	1 cut(s)	500
AoxI	GGCC	7 cut(s)	3, 81, 254, 616, 864, 924, 1528
ApeKI	GCWGC	2 cut(s)	1097, 1535
ApoI	RAATTY	4 cut(s)	218, 825, 1574, 2263
ArsI	GACNNNNNNTTYG	4 cut(s)	281, 313, 963, 995
AseI	ATTAAT	1 cut(s)	956
Asp700I	GAANNNNTTC	2 cut(s)	990, 1401
AspLEI	GCGC	1 cut(s)	494
AspS9I	GGNCC	9 cut(s)	50, 254, 616, 905, 1355, 1646, 1723, 1796, 1931
AsuHPI	GGTGA	3 cut(s)	110, 1066, 1757
AvaII	GGWCC	7 cut(s)	50, 905, 1355, 1646, 1723, 1796, 1931
BalI	TGGCCA	2 cut(s)	5, 83
BanI	GGYRCC	1 cut(s)	1019
BbsI	GAAGAC	2 cut(s)	454, 1109
BbvI	GCAGC	2 cut(s)	1084, 1522
BccI	CCATC	7 cut(s)	38, 135, 265, 929, 1212, 1499, 2194
BceAI	ACGGC	4 cut(s)	423, 911, 1032, 1515
BcgI	CGANNNNNNTGC	4 cut(s)	1270, 1304, 2276, 2310
BciT130I	CCWGG	6 cut(s)	39, 389, 421, 501, 917, 1460
BciVI	GTATCC	2 cut(s)	803, 2041
BclI	TGATCA	2 cut(s)	1600, 1740
BcoDI	GTCTC	5 cut(s)	985, 1163, 1657, 1718, 1776
BcuI	ACTAGT	2 cut(s)	1546, 1855
BfaI	CTAG	7 cut(s)	122, 434, 485, 857, 1547, 1730, 1856
BfmI	CTRYAG	2 cut(s)	372, 453
BfuI	GTATCC	2 cut(s)	803, 2041
BisI	GCNGC	2 cut(s)	1098, 1536
BlsI	GCNGC	2 cut(s)	1099, 1537
BmcAI	AGTACT	1 cut(s)	1545
Bme1390I	CCNGG	6 cut(s)	39, 389, 421, 501, 917, 1460
Bme18I	GGWCC	7 cut(s)	50, 905, 1355, 1646, 1723, 1796, 1931
BmgT120I	GGNCC	9 cut(s)	50, 254, 616, 905, 1355, 1646, 1723, 1796, 1931
BmiI	GGNNCC	3 cut(s)	255, 1021, 2099
BmrFI	CCNGG	6 cut(s)	39, 389, 421, 501, 917, 1460
BmrI	ACTGGG	3 cut(s)	215, 560, 2155
BmsI	GCATC	4 cut(s)	252, 640, 1455, 2328
BmuI	ACTGGG	3 cut(s)	215, 560, 2155
BpiI	GAAGAC	2 cut(s)	454, 1109
BplI	GAGNNNNNCTC	2 cut(s)	1613, 1645
BpmI	CTGGAG	2 cut(s)	1217, 1662
Bpu10I	CCTNAGC	1 cut(s)	1719
BpuEI	CTTGAG	1 cut(s)	561
Bsa29I	ATCGAT	1 cut(s)	2113
BsaBI	GATNNNNATC	1 cut(s)	1181
BsaHI	GRCGYC	1 cut(s)	879
BsaI	GGTCTC	1 cut(s)	985
BsaJI	CCNNGG	5 cut(s)	37, 38, 388, 916, 2101
BsaWI	WCCGGW	1 cut(s)	319
Bsc4I	CCNNNNNNNGG	5 cut(s)	488, 820, 922, 1987, 2200
Bse118I	RCCGGY	1 cut(s)	488
Bse3DI	GCAATG	1 cut(s)	1908
Bse8I	GATNNNNATC	1 cut(s)	1181
BseBI	CCWGG	6 cut(s)	39, 389, 421, 501, 917, 1460
BseCI	ATCGAT	1 cut(s)	2113
BseDI	CCNNGG	5 cut(s)	37, 38, 388, 916, 2101
BseGI	GGATG	6 cut(s)	127, 592, 1223, 1887, 2146, 2242
BseJI	GATNNNNATC	1 cut(s)	1181
BseLI	CCNNNNNNNGG	5 cut(s)	488, 820, 922, 1987, 2200
BseMI	GCAATG	1 cut(s)	1908
BseMII	CTCAG	2 cut(s)	1180, 1733
BseRI	GAGGAG	1 cut(s)	525
BseXI	GCAGC	2 cut(s)	1084, 1522
BseYI	CCCAGC	1 cut(s)	2272
BsgI	GTGCAG	1 cut(s)	1521
Bsh1236I	CGCG	1 cut(s)	1944
BshFI	GGCC	7 cut(s)	5, 83, 256, 618, 866, 926, 1530
BshNI	GGYRCC	1 cut(s)	1019
BshVI	ATCGAT	1 cut(s)	2113
BsiSI	CCGG	2 cut(s)	320, 489
BslFI	GGGAC	4 cut(s)	222, 302, 1535, 2366
BslI	CCNNNNNNNGG	5 cut(s)	488, 820, 922, 1987, 2200
BsmAI	GTCTC	5 cut(s)	985, 1163, 1657, 1718, 1776
BsmBI	CGTCTC	1 cut(s)	1718
BsmFI	GGGAC	4 cut(s)	222, 302, 1535, 2366
BsmI	GAATGC	2 cut(s)	1407, 1873
BsnI	GGCC	7 cut(s)	5, 83, 256, 618, 866, 926, 1530
Bso31I	GGTCTC	1 cut(s)	985
Bsp1407I	TGTACA	1 cut(s)	1035
Bsp143I	GATC	4 cut(s)	1340, 1600, 1740, 2110
BspACI	CCGC	4 cut(s)	77, 1582, 1929, 1942
BspANI	GGCC	7 cut(s)	5, 83, 256, 618, 866, 926, 1530
BspCNI	CTCAG	2 cut(s)	1179, 1732
BspDI	ATCGAT	1 cut(s)	2113
BspFNI	CGCG	1 cut(s)	1944
BspLI	GGNNCC	3 cut(s)	255, 1021, 2099
BspMAI	CTGCAG	1 cut(s)	376
BspPI	GGATC	1 cut(s)	1348
BspQI	GCTCTTC	1 cut(s)	533
BspT107I	GGYRCC	1 cut(s)	1019
BspTNI	GGTCTC	1 cut(s)	985
BsrDI	GCAATG	1 cut(s)	1908
BsrFI	RCCGGY	1 cut(s)	488
BsrGI	TGTACA	1 cut(s)	1035
BssAI	RCCGGY	1 cut(s)	488
BssECI	CCNNGG	5 cut(s)	37, 38, 388, 916, 2101
BssMI	GATC	4 cut(s)	1340, 1600, 1740, 2110
BssNAI	GTATAC	2 cut(s)	355, 1193
BssNI	GRCGYC	1 cut(s)	879
BssT1I	CCWWGG	1 cut(s)	2101
Bst1107I	GTATAC	2 cut(s)	355, 1193
Bst2UI	CCWGG	6 cut(s)	39, 389, 421, 501, 917, 1460
Bst6I	CTCTTC	2 cut(s)	533, 2037
BstACI	GRCGYC	1 cut(s)	879
BstAPI	GCANNNNNTGC	1 cut(s)	1413
BstAUI	TGTACA	1 cut(s)	1035
BstDEI	CTNAG	2 cut(s)	1166, 1719
BstF5I	GGATG	6 cut(s)	127, 592, 1223, 1887, 2146, 2242
BstFNI	CGCG	1 cut(s)	1944
BstHHI	GCGC	1 cut(s)	494
BstKTI	GATC	4 cut(s)	1343, 1603, 1743, 2113
BstMAI	GTCTC	5 cut(s)	985, 1163, 1657, 1718, 1776
BstMBI	GATC	4 cut(s)	1340, 1600, 1740, 2110
BstMWI	GCNNNNNNNGC	4 cut(s)	96, 632, 1094, 1413
BstNI	CCWGG	6 cut(s)	39, 389, 421, 501, 917, 1460
BstNSI	RCATGY	4 cut(s)	397, 1696, 1972, 2293
BstSCI	CCNGG	6 cut(s)	37, 387, 419, 499, 915, 1458
BstSFI	CTRYAG	2 cut(s)	372, 453
BstUI	CGCG	1 cut(s)	1944
BstV1I	GCAGC	2 cut(s)	1084, 1522
BstV2I	GAAGAC	2 cut(s)	454, 1109
BstXI	CCANNNNNNTGG	2 cut(s)	902, 1526
BstZ17I	GTATAC	2 cut(s)	355, 1193
Bsu15I	ATCGAT	1 cut(s)	2113
BsuI	GTATCC	2 cut(s)	803, 2041
BsuRI	GGCC	7 cut(s)	5, 83, 256, 618, 866, 926, 1530
BsuTUI	ATCGAT	1 cut(s)	2113
BtgZI	GCGATG	1 cut(s)	1295
BtsCI	GGATG	6 cut(s)	127, 592, 1223, 1887, 2146, 2242
BtsI	GCAGTG	3 cut(s)	381, 653, 1494
BtsIMutI	CAGTG	8 cut(s)	91, 203, 381, 653, 998, 1494, 1851, 2328
CaiI	CAGNNNCTG	1 cut(s)	500
CfoI	GCGC	1 cut(s)	494
Cfr10I	RCCGGY	1 cut(s)	488
Cfr13I	GGNCC	9 cut(s)	50, 254, 616, 905, 1355, 1646, 1723, 1796, 1931
ClaI	ATCGAT	1 cut(s)	2113
CseI	GACGC	2 cut(s)	145, 887
Csp6I	GTAC	9 cut(s)	311, 929, 1036, 1163, 1307, 1318, 1544, 1733, 2150
CviQI	GTAC	9 cut(s)	311, 929, 1036, 1163, 1307, 1318, 1544, 1733, 2150
DdeI	CTNAG	2 cut(s)	1166, 1719
DpnI	GATC	4 cut(s)	1342, 1602, 1742, 2112
DpnII	GATC	4 cut(s)	1340, 1600, 1740, 2110
EaeI	YGGCCR	4 cut(s)	3, 81, 924, 1528
Eam1104I	CTCTTC	2 cut(s)	533, 2037
EarI	CTCTTC	2 cut(s)	533, 2037
EciI	GGCGGA	1 cut(s)	1944
Eco130I	CCWWGG	1 cut(s)	2101
Eco31I	GGTCTC	1 cut(s)	985
Eco32I	GATATC	1 cut(s)	45
Eco47I	GGWCC	7 cut(s)	50, 905, 1355, 1646, 1723, 1796, 1931
Eco57I	CTGAAG	5 cut(s)	76, 218, 451, 591, 1055
EcoRII	CCWGG	6 cut(s)	37, 387, 419, 499, 915, 1458
EcoRV	GATATC	1 cut(s)	45
EcoT14I	CCWWGG	1 cut(s)	2101
ErhI	CCWWGG	1 cut(s)	2101
Esp3I	CGTCTC	1 cut(s)	1718
FaqI	GGGAC	4 cut(s)	222, 302, 1535, 2366
FauI	CCCGC	1 cut(s)	84
FauNDI	CATATG	1 cut(s)	897
FbaI	TGATCA	2 cut(s)	1600, 1740
FblI	GTMKAC	2 cut(s)	354, 1192
Fnu4HI	GCNGC	2 cut(s)	1098, 1536
FokI	GGATG	6 cut(s)	114, 599, 1230, 1894, 2153, 2249
Fsp4HI	GCNGC	2 cut(s)	1098, 1536
FspBI	CTAG	7 cut(s)	122, 434, 485, 857, 1547, 1730, 1856
GlaI	GCGC	1 cut(s)	493
GluI	GCNGC	2 cut(s)	1098, 1536
GsaI	CCCAGC	1 cut(s)	2276
GsuI	CTGGAG	2 cut(s)	1217, 1662
HaeIII	GGCC	7 cut(s)	5, 83, 256, 618, 866, 926, 1530
HapII	CCGG	2 cut(s)	320, 489
HgaI	GACGC	2 cut(s)	145, 887
HhaI	GCGC	1 cut(s)	494
Hin1I	GRCGYC	1 cut(s)	879
Hin6I	GCGC	1 cut(s)	492
HinP1I	GCGC	1 cut(s)	492
HincII	GTYRAC	1 cut(s)	1780
HindII	GTYRAC	1 cut(s)	1780
HindIII	AAGCTT	2 cut(s)	1232, 2060
HinfI	GANTC	6 cut(s)	504, 1311, 1781, 2019, 2069, 2381
HpaII	CCGG	2 cut(s)	320, 489
HphI	GGTGA	3 cut(s)	110, 1066, 1757
Hpy166II	GTNNAC	9 cut(s)	53, 355, 478, 1193, 1358, 1423, 1441, 1510, 1780
Hpy188III	TCNNGA	5 cut(s)	532, 1641, 1721, 2005, 2081
Hpy8I	GTNNAC	9 cut(s)	53, 355, 478, 1193, 1358, 1423, 1441, 1510, 1780
HpyAV	CCTTC	2 cut(s)	800, 814
HpyCH4IV	ACGT	2 cut(s)	330, 681
HpyF10VI	GCNNNNNNNGC	4 cut(s)	96, 632, 1094, 1413
HpyF3I	CTNAG	2 cut(s)	1166, 1719
HpySE526I	ACGT	2 cut(s)	330, 681
Hsp92I	GRCGYC	1 cut(s)	879
HspAI	GCGC	1 cut(s)	492
KroI	GCCGGC	1 cut(s)	488
KroNI	GCCGGC	1 cut(s)	490
Ksp22I	TGATCA	2 cut(s)	1600, 1740
Kzo9I	GATC	4 cut(s)	1340, 1600, 1740, 2110
LguI	GCTCTTC	1 cut(s)	533
LmnI	GCTCC	3 cut(s)	1198, 1990, 2366
Lsp1109I	GCAGC	2 cut(s)	1084, 1522
LweI	GCATC	4 cut(s)	252, 640, 1455, 2328
MaeI	CTAG	7 cut(s)	122, 434, 485, 857, 1547, 1730, 1856
MaeII	ACGT	2 cut(s)	330, 681
MaeIII	GTNAC	4 cut(s)	169, 1294, 1973, 2378
MalI	GATC	4 cut(s)	1342, 1602, 1742, 2112
MboI	GATC	4 cut(s)	1340, 1600, 1740, 2110
MfeI	CAATTG	1 cut(s)	714
MlsI	TGGCCA	2 cut(s)	5, 83
MluNI	TGGCCA	2 cut(s)	5, 83
MlyI	GAGTC	3 cut(s)	1775, 2078, 2375
MmeI	TCCRAC	2 cut(s)	1318, 1499
Mox20I	TGGCCA	2 cut(s)	5, 83
MroNI	GCCGGC	1 cut(s)	488
MroXI	GAANNNNTTC	2 cut(s)	990, 1401
MscI	TGGCCA	2 cut(s)	5, 83
MseI	TTAA	7 cut(s)	668, 792, 956, 1578, 1818, 2088, 2395
MslI	CAYNNNNRTG	5 cut(s)	887, 1031, 1175, 1969, 2135
Msp20I	TGGCCA	2 cut(s)	5, 83
MspA1I	CMGCKG	1 cut(s)	79
MspI	CCGG	2 cut(s)	320, 489
MspR9I	CCNGG	6 cut(s)	39, 389, 421, 501, 917, 1460
MunI	CAATTG	1 cut(s)	714
Mva1269I	GAATGC	2 cut(s)	1407, 1873
MvaI	CCWGG	6 cut(s)	39, 389, 421, 501, 917, 1460
MvnI	CGCG	1 cut(s)	1944
MwoI	GCNNNNNNNGC	4 cut(s)	96, 632, 1094, 1413
NaeI	GCCGGC	1 cut(s)	490
NdeI	CATATG	1 cut(s)	897
NdeII	GATC	4 cut(s)	1340, 1600, 1740, 2110
NgoMIV	GCCGGC	1 cut(s)	488
NlaIV	GGNNCC	3 cut(s)	255, 1021, 2099
NmuCI	GTSAC	2 cut(s)	1973, 2378
NspI	RCATGY	4 cut(s)	397, 1696, 1972, 2293
OliI	CACNNNNGTG	1 cut(s)	1969
PaeI	GCATGC	1 cut(s)	397
PasI	CCCWGGG	1 cut(s)	38
PciSI	GCTCTTC	1 cut(s)	533
PctI	GAATGC	2 cut(s)	1407, 1873
PdiI	GCCGGC	1 cut(s)	490
PdmI	GAANNNNTTC	2 cut(s)	990, 1401
PfeI	GAWTC	3 cut(s)	504, 1311, 2019
PfoI	TCCNGGA	3 cut(s)	419, 499, 1458
PkrI	GCNGC	2 cut(s)	1099, 1537
PleI	GAGTC	3 cut(s)	1775, 2077, 2375
PpsI	GAGTC	3 cut(s)	1775, 2077, 2375
PshBI	ATTAAT	1 cut(s)	956
PsiI	TTATAA	1 cut(s)	1212
Psp1406I	AACGTT	1 cut(s)	681
Psp6I	CCWGG	6 cut(s)	37, 387, 419, 499, 915, 1458
PspFI	CCCAGC	1 cut(s)	2272
PspGI	CCWGG	6 cut(s)	37, 387, 419, 499, 915, 1458
PspN4I	GGNNCC	3 cut(s)	255, 1021, 2099
PspPI	GGNCC	9 cut(s)	50, 254, 616, 905, 1355, 1646, 1723, 1796, 1931
PstI	CTGCAG	1 cut(s)	376
PstNI	CAGNNNCTG	1 cut(s)	500
RsaI	GTAC	9 cut(s)	312, 930, 1037, 1164, 1308, 1319, 1545, 1734, 2151
RsaNI	GTAC	9 cut(s)	311, 929, 1036, 1163, 1307, 1318, 1544, 1733, 2150
RseI	CAYNNNNRTG	5 cut(s)	887, 1031, 1175, 1969, 2135
SapI	GCTCTTC	1 cut(s)	533
SaqAI	TTAA	7 cut(s)	668, 792, 956, 1578, 1818, 2088, 2395
SatI	GCNGC	2 cut(s)	1098, 1536
Sau3AI	GATC	4 cut(s)	1340, 1600, 1740, 2110
Sau96I	GGNCC	9 cut(s)	50, 254, 616, 905, 1355, 1646, 1723, 1796, 1931
ScaI	AGTACT	1 cut(s)	1545
SchI	GAGTC	3 cut(s)	1775, 2078, 2375
ScrFI	CCNGG	6 cut(s)	39, 389, 421, 501, 917, 1460
SfaNI	GCATC	4 cut(s)	252, 640, 1455, 2328
SfcI	CTRYAG	2 cut(s)	372, 453
SinI	GGWCC	7 cut(s)	50, 905, 1355, 1646, 1723, 1796, 1931
SmiMI	CAYNNNNRTG	5 cut(s)	887, 1031, 1175, 1969, 2135
SmlI	CTYRAG	1 cut(s)	576
SmoI	CTYRAG	1 cut(s)	576
SpeI	ACTAGT	2 cut(s)	1546, 1855
SphI	GCATGC	1 cut(s)	397
SsiI	CCGC	4 cut(s)	77, 1582, 1929, 1942
SspMI	CTAG	7 cut(s)	122, 434, 485, 857, 1547, 1730, 1856
StyD4I	CCNGG	6 cut(s)	37, 387, 419, 499, 915, 1458
StyI	CCWWGG	1 cut(s)	2101
TaiI	ACGT	2 cut(s)	333, 684
TaqI	TCGA	3 cut(s)	1892, 2113, 2133
TaqII	GACCGA	1 cut(s)	983
TatI	WGTACW	3 cut(s)	310, 1035, 1543
TfiI	GAWTC	3 cut(s)	504, 1311, 2019
Tru1I	TTAA	7 cut(s)	668, 792, 956, 1578, 1818, 2088, 2395
Tru9I	TTAA	7 cut(s)	668, 792, 956, 1578, 1818, 2088, 2395
TscAI	CASTG	8 cut(s)	91, 210, 381, 660, 1005, 1501, 1851, 2328
TseFI	GTSAC	2 cut(s)	1973, 2378
TseI	GCWGC	2 cut(s)	1097, 1535
Tsp45I	GTSAC	2 cut(s)	1973, 2378
TspGWI	ACGGA	2 cut(s)	1700, 2110
TspRI	CASTG	8 cut(s)	91, 210, 381, 660, 1005, 1501, 1851, 2328
VpaK11BI	GGWCC	7 cut(s)	50, 905, 1355, 1646, 1723, 1796, 1931
VspI	ATTAAT	1 cut(s)	956
XapI	RAATTY	4 cut(s)	218, 825, 1574, 2263
XceI	RCATGY	4 cut(s)	397, 1696, 1972, 2293
XmiI	GTMKAC	2 cut(s)	354, 1192
XmnI	GAANNNNTTC	2 cut(s)	990, 1401
XspI	CTAG	7 cut(s)	122, 434, 485, 857, 1547, 1730, 1856
ZrmI	AGTACT	1 cut(s)	1545

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.