Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001018.1

Orthogroup ID

OG0001152

Physical Location & Seq

Genomic Coordinates Forward (+)

215545 .. 215901

Gene Structure 357 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001018.1_g000050.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 240 bp

atgtctcctaaagattatcggattcagcagtttgagcccaggtctgcaacgcgatcaagcttggccaacttgtccaactactcatacaaggtggcgttgtttttcattggtggccctgacaaccgcgaggcgttagcctatgcaacgcgcttgacaggcaatccgagagtgcaaatgacgattttcaggtttattttgaaaaataaagacgagcttagtgaagaggatcgagctggatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0006810 GO:0006811 GO:0006812 GO:0006885 GO:0008150 GO:0012505 GO:0015672 GO:0042592 GO:0044464 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055067 GO:0055080 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_H_Exchanger

Protein Analysis

79

Amino Acids

9.06

Weight (kDa)

9.52

Isoelectric Point (pI)

46.49

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001152)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g43690 FvH4_7g25211 FvH4_7g25250 FvH4_7g25290 FvH4_7g25310
malus_domestica	MD01G1158700.v1.1 MD01G1158800.v1.1 MD07G1227200.v1.1 MD07G1227600.v1.1
prunus_persica	Prupe.2G257000_v2.0.a1 Prupe.2G257100_v2.0.a1
pyrus_communis	pycom01g17540
rosa_chinensis	RchiOBHm_Chr1g0371191 RchiOBHm_Chr1g0371201 RchiOBHm_Chr1g0371211
rosa_laevigata	RLG00000026978 RLG00000026979 RLG00000026980 RLG00000026981 RLG00000026983 RLG00000036771
rosa_multiflora	Rmu_co8222838.1_g000001 Rmu_sc0000631.1_g000023 Rmu_sc0001018.1_g000042 Rmu_sc0001018.1_g000044 Rmu_sc0001018.1_g000049 Rmu_sc0001018.1_g000050 Rmu_sc0001018.1_g000051 Rmu_sc0008081.1_g000003
rosa_roxburghii	Rroxscaffold_4G00285900 Rroxscaffold_4G00285910
rosa_rugosa	Rorug01G0361700 Rorug01G0361900 Rorug01G0362000 Rorug01G0362200 Rorug05G0460600
rosa_samantha	Rh1AG372000 Rh1AG372200 Rh1AG372300 Rh1BG335100 Rh1BG335500 Rh1BG335700 Rh1BG335800 Rh1CG348600 Rh1CG349000 Rh1CG349100 Rh1CG349200 Rh1DG366500 Rh1DG366900 Rh1DG367000 Rh5BG537300 Rh5CG560800 Rh5DG548900
rosa_wichuraiana	Rw1G032720 Rw1G032730 Rw1G032740 Rw5G047750 Rw5G047880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	52, 126, 148
AciI	CCGC	1 cut(s)	124
AclWI	GGATC	1 cut(s)	234
AcoI	YGGCCR	1 cut(s)	63
AgsI	TTSAA	1 cut(s)	199
AjnI	CCWGG	1 cut(s)	38
AluBI	AGCT	3 cut(s)	60, 214, 233
AluI	AGCT	3 cut(s)	60, 214, 233
Alw26I	GTCTC	1 cut(s)	9
AlwI	GGATC	1 cut(s)	234
AoxI	GGCC	2 cut(s)	63, 112
AspLEI	GCGC	1 cut(s)	150
AspS9I	GGNCC	1 cut(s)	113
BalI	TGGCCA	1 cut(s)	65
BanII	GRGCYC	1 cut(s)	39
BciT130I	CCWGG	1 cut(s)	40
BcoDI	GTCTC	1 cut(s)	9
Bme1390I	CCNGG	1 cut(s)	40
BmgT120I	GGNCC	1 cut(s)	113
BmrFI	CCNGG	1 cut(s)	40
BsaJI	CCNNGG	1 cut(s)	38
BseBI	CCWGG	1 cut(s)	40
BseDI	CCNNGG	1 cut(s)	38
Bsh1236I	CGCG	3 cut(s)	52, 126, 148
BshFI	GGCC	2 cut(s)	65, 114
BsmAI	GTCTC	1 cut(s)	9
BsnI	GGCC	2 cut(s)	65, 114
Bsp1286I	GDGCHC	1 cut(s)	39
Bsp143I	GATC	2 cut(s)	53, 226
BspACI	CCGC	1 cut(s)	124
BspANI	GGCC	2 cut(s)	65, 114
BspFNI	CGCG	3 cut(s)	52, 126, 148
BspPI	GGATC	1 cut(s)	234
BssECI	CCNNGG	1 cut(s)	38
BssMI	GATC	2 cut(s)	53, 226
Bst2UI	CCWGG	1 cut(s)	40
Bst6I	CTCTTC	1 cut(s)	216
BstDEI	CTNAG	1 cut(s)	215
BstFNI	CGCG	3 cut(s)	52, 126, 148
BstHHI	GCGC	1 cut(s)	150
BstKTI	GATC	2 cut(s)	56, 229
BstMAI	GTCTC	1 cut(s)	9
BstMBI	GATC	2 cut(s)	53, 226
BstMWI	GCNNNNNNNGC	2 cut(s)	34, 156
BstNI	CCWGG	1 cut(s)	40
BstSCI	CCNGG	1 cut(s)	38
BstUI	CGCG	3 cut(s)	52, 126, 148
BsuRI	GGCC	2 cut(s)	65, 114
CfoI	GCGC	1 cut(s)	150
Cfr13I	GGNCC	1 cut(s)	113
CviJI	RGCY	7 cut(s)	37, 60, 65, 114, 137, 214, 233
CviKI_1	RGCY	7 cut(s)	37, 60, 65, 114, 137, 214, 233
DdeI	CTNAG	1 cut(s)	215
DpnI	GATC	2 cut(s)	55, 228
DpnII	GATC	2 cut(s)	53, 226
EaeI	YGGCCR	1 cut(s)	63
Eam1104I	CTCTTC	1 cut(s)	216
EarI	CTCTTC	1 cut(s)	216
Eco24I	GRGCYC	1 cut(s)	39
EcoRII	CCWGG	1 cut(s)	38
EcoT38I	GRGCYC	1 cut(s)	39
FaiI	YATR	2 cut(s)	85, 141
FalI	AAGNNNNNCTT	2 cut(s)	198, 230
FriOI	GRGCYC	1 cut(s)	39
GlaI	GCGC	1 cut(s)	149
HaeIII	GGCC	2 cut(s)	65, 114
HhaI	GCGC	1 cut(s)	150
Hin6I	GCGC	1 cut(s)	148
HinP1I	GCGC	1 cut(s)	148
HindIII	AAGCTT	1 cut(s)	58
HinfI	GANTC	1 cut(s)	22
Hpy188I	TCNGA	2 cut(s)	21, 165
HpyCH4V	TGCA	3 cut(s)	47, 143, 172
HpyF10VI	GCNNNNNNNGC	2 cut(s)	34, 156
HpyF3I	CTNAG	1 cut(s)	215
HspAI	GCGC	1 cut(s)	148
Kzo9I	GATC	2 cut(s)	53, 226
LpnPI	CCDG	6 cut(s)	25, 52, 129, 141, 172, 219
MalI	GATC	2 cut(s)	55, 228
MboI	GATC	2 cut(s)	53, 226
MboII	GAAGA	1 cut(s)	233
MhlI	GDGCHC	1 cut(s)	39
MlsI	TGGCCA	1 cut(s)	65
MluNI	TGGCCA	1 cut(s)	65
MmeI	TCCRAC	1 cut(s)	99
MnlI	CCTC	2 cut(s)	121, 217
Mox20I	TGGCCA	1 cut(s)	65
MscI	TGGCCA	1 cut(s)	65
Msp20I	TGGCCA	1 cut(s)	65
MspR9I	CCNGG	1 cut(s)	40
MvaI	CCWGG	1 cut(s)	40
MvnI	CGCG	3 cut(s)	52, 126, 148
MwoI	GCNNNNNNNGC	2 cut(s)	34, 156
NdeII	GATC	2 cut(s)	53, 226
PfeI	GAWTC	1 cut(s)	22
Psp6I	CCWGG	1 cut(s)	38
PspGI	CCWGG	1 cut(s)	38
PspPI	GGNCC	1 cut(s)	113
Sau3AI	GATC	2 cut(s)	53, 226
Sau96I	GGNCC	1 cut(s)	113
ScrFI	CCNGG	1 cut(s)	40
SduI	GDGCHC	1 cut(s)	39
SetI	ASST	6 cut(s)	44, 62, 93, 191, 216, 235
SsiI	CCGC	1 cut(s)	124
StyD4I	CCNGG	1 cut(s)	38
TaqI	TCGA	1 cut(s)	229
TfiI	GAWTC	1 cut(s)	22
TspDTI	ATGAA	1 cut(s)	94

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.