Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1B

Orthogroup ID

OG0001152

Physical Location & Seq

Genomic Coordinates Forward (+)

47120990 .. 47125145

Gene Structure 4156 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1BG335500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2376 bp

ATGGCTCAATATGAGCAGATGATATCGTTTCGAGTATGTGAGCAACCGAGTGCCATTGCCTCCAAAGGGTTTTGGTTTAAAGAAAATCCTTTAGACTATGCATTTCCTGCAACCCTAGTCCAAATTGTCCTTGTTGTTGTGACCTCTCGGCTACTTCATTTTTTTCTCAAGCCTCTGGGACAGACCAAATTCTCTTGCAATCTCCTGGGTGGGTTTATCTTGGGTCCTTCTCTGCTAGGGCGTAACCAGGTTATAAGGGACAAACTATTTAATCCGAAACATGCGTCGTTGTGGGCAACAATGGGTCTGCTGGGCGCTATATATTCCATGTTCATAACTGCAGTAAAATTTGACATAAGCATGATCAAAGGGACAAAGCATTCTTTGAAGATTGGTGTTCCAGGGTTCTTTATTACCGTTGCGGTATCCTTAGGCCTTGGATACCCGCTAGCCACCTACATTGCTGGAATCAAAGGGGGATTCTTCCCCATATTTTTATTTTCTATTATTTCTTTCACTTTCTTCCCTGATATAGCTCCGGCCTTAGAGGACCTCAACCTTATGAATTCTGAGTTGGGTCAAATCGCCATGTCCTCGGTTTTGCATTTTGAAATGATACAATGGTTGTTCTCAACAGTACAAGACATAGCTACCAAAGATAAAGCAATCCACGGAGCTTTGACATTCATTTCCGCAGTGGTATTGCTTGTTTTCATTGTTTATGTCATACGCCCGCTTATGGTATCAATTGCTAAGAACACACCCGAAGGACAACAAGTAAAGGAGTTTTATGTAGTAGCAATACTAGTTGGGGCTCTAGTCCTGTCGTTTATATCCGACGCAATAGGTTGCACCTTTGTTCTTGGCCCTGTAATTCTTGGGTTTGTCATACCAGATGGACCACCTCTGGGTGCAACATTAGTAACCAAGACTGAATTGTTGGTCTCTGAACTTCTTCTTCCCGTGTTCTTTTTTCGTATTGGCTTCAGGATAAACATACTGTCGATTAGCGATTGGAAGAGTTTTACCACATTGCAGGCCATCATTGGTGCATCATATGTGGCAAAGATGGTGGCAGTTACCGGGGCTGCATTGTGCTGCAAAATTAGTTTGAGAAATAGTCTCTTGCTCGGCATAATATTGAATATCCGGGGTATTATAGATTTGACCCTTTTCTCTCGATGGAGGTATAGTCAGCTCCTAAATGAACACGTTTATACTCAACTAGTGTTATCTGTGCTGATTGGGAACATGATTGCAACATCATTGGTACATTTCACATACAGACCTCATTTAAGACTAGGGCCATCACCCAAAGGTCCACGCATTAGAAACATTCAATCAGTTCAAAGCAACTCTCCTTTCGACATTCTTTGTTGTATCCACAACGAGGAAAGTATCCGCAACCTCACCTCCCTCCTAGAAGCCTCAAACCCAACAGAAGCAAGCCCTATTTGCGCTTACATTATCCAAGCAGTTGAGCTTGTGGGGCGGGCTGTACCTGTACTAGTCCCTTATAAGAAGAAGAAGGAGGGAAACAAATTTTACCGAATAAATTCACTCACACATCATATGATGCAAGCCTTTTTGAACTACTCGGAAAACTCAAGTGGACCTGTCTTGATCCAATCATTCACTATGATCGCGCCCTATAAATCAATGCATGAGACCATTTGCCGTCTAGTGGATGACAATCTCGTACCTTTGGTTATCCTCCCATTTCATGAAAACCACCAGGTTATGGTTGACACCAACGTGACTGCCTCAATACGACAATTCAACAACAATGTGCAGGAATATTCATCGTGTACAGTTGGAATACTAGTTGAAAGAGGGTTGCCTGGTCGGCTGACCATGTCCCATTTCTCATACAATGTGGCTACATTTTTCATTGGCGGACCAGATGACCGCGAGGCTTTGGCCTTATCAGCACGTATGTTAGGCAACCAGAATGTGGTCCTCACAGTATACAAGTTTATTGTGCGGAAAAAATTAAGCGAGGGTAACTATAATGAAGACGAGGAGATGGAGACCGGGCTGGATGAGTCGATGGTGGATGAGTTTAAGCTGAGGAATAATGGGAATGACGGCTTGAATTGGGCAGATATCGAGGTTGAGGACTCTATACAGCTTATTGATGCAATTATGAACTCGCAGGGGGATTATGATCTAGTAATGGTTGGAAGGCGGCATGCGAACAGTTCATTGAGGGATGAGGAAATGTCAGAATTTGTGCATTATGCGGAGCTGGGAATGATCGGTGACATGCTTGCTTCTTCAGATTTCTGTGGTGGAATGGTGAATGTTTTGGTGTTGCAAGAAAGCAAGGAACTTAGTAGAAATTATGGATCAGCTTTTCGAAAGATTTGGGAATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0006810 GO:0006811 GO:0006812 GO:0006885 GO:0008150 GO:0012505 GO:0015672 GO:0042592 GO:0044464 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055067 GO:0055080 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_H_Exchanger

Protein Analysis

791

Amino Acids

87.95

Weight (kDa)

6.4

Isoelectric Point (pI)

36.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Na_H_Exchanger	PF00999	47 - 424	2.9e-29	Sodium/hydrogen exchanger, transmembrane
CHX17_2nd	PF23256	487 - 618	4.1e-06	Plant cation/H(+) antiporter domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001152)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g43690 FvH4_7g25211 FvH4_7g25250 FvH4_7g25290 FvH4_7g25310
malus_domestica	MD01G1158700.v1.1 MD01G1158800.v1.1 MD07G1227200.v1.1 MD07G1227600.v1.1
prunus_persica	Prupe.2G257000_v2.0.a1 Prupe.2G257100_v2.0.a1
pyrus_communis	pycom01g17540
rosa_chinensis	RchiOBHm_Chr1g0371191 RchiOBHm_Chr1g0371201 RchiOBHm_Chr1g0371211
rosa_laevigata	RLG00000026978 RLG00000026979 RLG00000026980 RLG00000026981 RLG00000026983 RLG00000036771
rosa_multiflora	Rmu_co8222838.1_g000001 Rmu_sc0000631.1_g000023 Rmu_sc0001018.1_g000042 Rmu_sc0001018.1_g000044 Rmu_sc0001018.1_g000049 Rmu_sc0001018.1_g000050 Rmu_sc0001018.1_g000051 Rmu_sc0008081.1_g000003
rosa_roxburghii	Rroxscaffold_4G00285900 Rroxscaffold_4G00285910
rosa_rugosa	Rorug01G0361700 Rorug01G0361900 Rorug01G0362000 Rorug01G0362200 Rorug05G0460600
rosa_samantha	Rh1AG372000 Rh1AG372200 Rh1AG372300 Rh1BG335100 Rh1BG335500 Rh1BG335700 Rh1BG335800 Rh1CG348600 Rh1CG349000 Rh1CG349100 Rh1CG349200 Rh1DG366500 Rh1DG366900 Rh1DG367000 Rh5BG537300 Rh5CG560800 Rh5DG548900
rosa_wichuraiana	Rw1G032720 Rw1G032730 Rw1G032740 Rw5G047750 Rw5G047880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	254, 1518
AccB7I	CCANNNNNTGG	2 cut(s)	1741, 1954
AccI	GTMKAC	1 cut(s)	1968
AccII	CGCG	2 cut(s)	1646, 1911
AclWI	GGATC	2 cut(s)	1618, 2356
AcsI	RAATTY	6 cut(s)	188, 347, 565, 1541, 1555, 2228
AcuI	CTGAAG	2 cut(s)	970, 2262
AfaI	GTAC	6 cut(s)	639, 1272, 1500, 1506, 1701, 1810
AfiI	CCNNNNNNNGG	7 cut(s)	66, 739, 908, 1390, 1684, 1741, 1954
AflIII	ACRYGT	1 cut(s)	1210
AgsI	TTSAA	9 cut(s)	388, 611, 1144, 1340, 1349, 1591, 1780, 1829, 2095
AhlI	ACTAGT	4 cut(s)	805, 1225, 1507, 1822
AjnI	CCWGG	5 cut(s)	204, 246, 400, 1734, 1840
AjuI	GAANNNNNNNTTGG	2 cut(s)	557, 589
AleI	CACNNNNGTG	1 cut(s)	1754
AluBI	AGCT	9 cut(s)	536, 650, 677, 1198, 1483, 2068, 2131, 2248, 2354
AluI	AGCT	9 cut(s)	536, 650, 677, 1198, 1483, 2068, 2131, 2248, 2354
Alw26I	GTCTC	4 cut(s)	949, 1127, 1661, 2024
AlwI	GGATC	2 cut(s)	1618, 2356
AoxI	GGCC	6 cut(s)	433, 540, 865, 1038, 1304, 1920
ApeKI	GCWGC	2 cut(s)	1088, 1098
ApoI	RAATTY	6 cut(s)	188, 347, 565, 1541, 1555, 2228
ArsI	GACNNNNNNTTYG	2 cut(s)	269, 301
Asp700I	GAANNNNTTC	2 cut(s)	954, 1555
AspLEI	GCGC	3 cut(s)	317, 1460, 1648
AspS9I	GGNCC	9 cut(s)	224, 550, 866, 899, 1304, 1319, 1613, 1898, 1957
AsuC2I	CCSGG	3 cut(s)	1084, 1151, 2035
AsuHPI	GGTGA	4 cut(s)	1302, 1402, 2273, 2311
AsuII	TTCGAA	1 cut(s)	2359
AsuNHI	GCTAGC	1 cut(s)	448
AvaII	GGWCC	7 cut(s)	224, 550, 899, 1319, 1613, 1898, 1957
AxyI	CCTNAGG	1 cut(s)	430
BaeI	ACNNNNGTAYC	2 cut(s)	608, 641
BanII	GRGCYC	1 cut(s)	817
BbsI	GAAGAC	1 cut(s)	2022
BbvCI	CCTCAGC	1 cut(s)	2069
BbvI	GCAGC	2 cut(s)	1075, 1085
BccI	CCATC	7 cut(s)	890, 1049, 1063, 1176, 1315, 2020, 2044
BceAI	ACGGC	2 cut(s)	1662, 2104
BciT130I	CCWGG	5 cut(s)	206, 248, 402, 1736, 1842
BciVI	GTATCC	4 cut(s)	434, 436, 1391, 1409
BclI	TGATCA	1 cut(s)	363
BcnI	CCSGG	3 cut(s)	1084, 1151, 2035
BcoDI	GTCTC	4 cut(s)	949, 1127, 1661, 2024
BcuI	ACTAGT	4 cut(s)	805, 1225, 1507, 1822
BfmI	CTRYAG	1 cut(s)	339
BfoI	RGCGCY	1 cut(s)	318
BfuI	GTATCC	4 cut(s)	434, 436, 1391, 1409
BglI	GCCNNNNNGGC	1 cut(s)	1846
BisI	GCNGC	3 cut(s)	1089, 1099, 2189
BlsI	GCNGC	3 cut(s)	1090, 1100, 2190
Bme1390I	CCNGG	8 cut(s)	206, 248, 402, 1084, 1151, 1736, 1842, 2035
Bme18I	GGWCC	7 cut(s)	224, 550, 899, 1319, 1613, 1898, 1957
BmgT120I	GGNCC	9 cut(s)	224, 550, 866, 899, 1304, 1319, 1613, 1898, 1957
BmiI	GGNNCC	1 cut(s)	225
BmrFI	CCNGG	8 cut(s)	206, 248, 402, 1084, 1151, 1736, 1842, 2035
BmsI	GCATC	3 cut(s)	1061, 1566, 2128
BmtI	GCTAGC	1 cut(s)	452
BpiI	GAAGAC	1 cut(s)	2022
Bpu10I	CCTNAGC	1 cut(s)	2069
Bpu14I	TTCGAA	1 cut(s)	2359
BpuEI	CTTGAG	2 cut(s)	152, 1591
BpuMI	CCSGG	3 cut(s)	1084, 1151, 2035
BsaAI	YACGTR	1 cut(s)	1934
BsaBI	GATNNNNATC	2 cut(s)	1692, 2166
BsaI	GGTCTC	3 cut(s)	949, 1661, 2024
BsaJI	CCNNGG	7 cut(s)	205, 401, 436, 594, 670, 1083, 1150
BsaXI	ACNNNNNCTCC	4 cut(s)	1177, 1207, 1397, 1427
Bsc4I	CCNNNNNNNGG	7 cut(s)	66, 739, 908, 1390, 1684, 1741, 1954
Bse21I	CCTNAGG	1 cut(s)	430
Bse3DI	GCAATG	3 cut(s)	54, 459, 1031
Bse8I	GATNNNNATC	2 cut(s)	1692, 2166
BseBI	CCWGG	5 cut(s)	206, 248, 402, 1736, 1842
BseDI	CCNNGG	7 cut(s)	205, 401, 436, 594, 670, 1083, 1150
BseGI	GGATG	4 cut(s)	1693, 2047, 2062, 2218
BseJI	GATNNNNATC	2 cut(s)	1692, 2166
BseLI	CCNNNNNNNGG	7 cut(s)	66, 739, 908, 1390, 1684, 1741, 1954
BseMI	GCAATG	3 cut(s)	54, 459, 1031
BseMII	CTCAG	2 cut(s)	561, 2060
BseRI	GAGGAG	1 cut(s)	2036
BseXI	GCAGC	2 cut(s)	1075, 1085
BseYI	CCCAGC	2 cut(s)	310, 2248
BsgI	GTGCAG	1 cut(s)	1811
Bsh1236I	CGCG	2 cut(s)	1646, 1911
BshFI	GGCC	6 cut(s)	435, 542, 867, 1040, 1306, 1922
BsiSI	CCGG	4 cut(s)	539, 1083, 1150, 2034
BslFI	GGGAC	5 cut(s)	192, 272, 385, 1496, 1843
BslI	CCNNNNNNNGG	7 cut(s)	66, 739, 908, 1390, 1684, 1741, 1954
BsmAI	GTCTC	4 cut(s)	949, 1127, 1661, 2024
BsmFI	GGGAC	5 cut(s)	192, 272, 385, 1496, 1843
BsmI	GAATGC	1 cut(s)	379
BsnI	GGCC	6 cut(s)	435, 542, 867, 1040, 1306, 1922
Bso31I	GGTCTC	3 cut(s)	949, 1661, 2024
Bsp119I	TTCGAA	1 cut(s)	2359
Bsp1286I	GDGCHC	1 cut(s)	817
Bsp1407I	TGTACA	1 cut(s)	1808
Bsp143I	GATC	6 cut(s)	363, 1623, 1641, 2167, 2256, 2348
BspANI	GGCC	6 cut(s)	435, 542, 867, 1040, 1306, 1922
BspCNI	CTCAG	2 cut(s)	562, 2061
BspFNI	CGCG	2 cut(s)	1646, 1911
BspHI	TCATGA	1 cut(s)	1723
BspLI	GGNNCC	1 cut(s)	225
BspMAI	CTGCAG	1 cut(s)	343
BspOI	GCTAGC	1 cut(s)	452
BspPI	GGATC	2 cut(s)	1618, 2356
BspT104I	TTCGAA	1 cut(s)	2359
BspTNI	GGTCTC	3 cut(s)	949, 1661, 2024
BsrDI	GCAATG	3 cut(s)	54, 459, 1031
BsrGI	TGTACA	1 cut(s)	1808
BssECI	CCNNGG	7 cut(s)	205, 401, 436, 594, 670, 1083, 1150
BssMI	GATC	6 cut(s)	363, 1623, 1641, 2167, 2256, 2348
BssNAI	GTATAC	1 cut(s)	1969
BssT1I	CCWWGG	1 cut(s)	436
Bst1107I	GTATAC	1 cut(s)	1969
Bst2UI	CCWGG	5 cut(s)	206, 248, 402, 1736, 1842
Bst4CI	ACNGT	6 cut(s)	418, 637, 1002, 1813, 1966, 2201
Bst6I	CTCTTC	1 cut(s)	1013
BstAPI	GCANNNNNTGC	1 cut(s)	107
BstAUI	TGTACA	1 cut(s)	1808
BstBAI	YACGTR	1 cut(s)	1934
BstBI	TTCGAA	1 cut(s)	2359
BstC8I	GCNNGC	8 cut(s)	450, 734, 1038, 1447, 1494, 1581, 2193, 2271
BstDEI	CTNAG	6 cut(s)	430, 544, 570, 753, 2069, 2333
BstDSI	CCRYGG	1 cut(s)	670
BstF5I	GGATG	4 cut(s)	1693, 2047, 2062, 2218
BstFNI	CGCG	2 cut(s)	1646, 1911
BstH2I	RGCGCY	1 cut(s)	318
BstHHI	GCGC	3 cut(s)	317, 1460, 1648
BstKTI	GATC	6 cut(s)	366, 1626, 1644, 2170, 2259, 2351
BstMAI	GTCTC	4 cut(s)	949, 1127, 1661, 2024
BstMBI	GATC	6 cut(s)	363, 1623, 1641, 2167, 2256, 2348
BstMWI	GCNNNNNNNGC	5 cut(s)	107, 1455, 1489, 1846, 1928
BstNI	CCWGG	5 cut(s)	206, 248, 402, 1736, 1842
BstNSI	RCATGY	3 cut(s)	284, 2195, 2269
BstSCI	CCNGG	8 cut(s)	204, 246, 400, 1082, 1149, 1734, 1840, 2033
BstSFI	CTRYAG	1 cut(s)	339
BstUI	CGCG	2 cut(s)	1646, 1911
BstV1I	GCAGC	2 cut(s)	1075, 1085
BstV2I	GAAGAC	1 cut(s)	2022
BstZ17I	GTATAC	1 cut(s)	1969
Bsu36I	CCTNAGG	1 cut(s)	430
BsuI	GTATCC	4 cut(s)	434, 436, 1391, 1409
BsuRI	GGCC	6 cut(s)	435, 542, 867, 1040, 1306, 1922
BtgI	CCRYGG	1 cut(s)	670
BtsCI	GGATG	4 cut(s)	1693, 2047, 2062, 2218
BtsI	GCAGTG	1 cut(s)	702
BtsIMutI	CAGTG	1 cut(s)	702
Cac8I	GCNNGC	8 cut(s)	450, 734, 1038, 1447, 1494, 1581, 2193, 2271
CciI	TCATGA	1 cut(s)	1723
CfoI	GCGC	3 cut(s)	317, 1460, 1648
Cfr13I	GGNCC	9 cut(s)	224, 550, 866, 899, 1304, 1319, 1613, 1898, 1957
CseI	GACGC	2 cut(s)	273, 848
CsiI	ACCWGGT	2 cut(s)	246, 1734
Csp6I	GTAC	6 cut(s)	638, 1271, 1499, 1505, 1700, 1809
CspCI	CAANNNNNGTGG	4 cut(s)	442, 477, 1053, 1088
CviQI	GTAC	6 cut(s)	638, 1271, 1499, 1505, 1700, 1809
DdeI	CTNAG	6 cut(s)	430, 544, 570, 753, 2069, 2333
DpnI	GATC	6 cut(s)	365, 1625, 1643, 2169, 2258, 2350
DpnII	GATC	6 cut(s)	363, 1623, 1641, 2167, 2256, 2348
DraI	TTTAAA	1 cut(s)	79
Eam1104I	CTCTTC	1 cut(s)	1013
EarI	CTCTTC	1 cut(s)	1013
EciI	GGCGGA	1 cut(s)	1911
Eco130I	CCWWGG	1 cut(s)	436
Eco147I	AGGCCT	1 cut(s)	435
Eco24I	GRGCYC	1 cut(s)	817
Eco31I	GGTCTC	3 cut(s)	949, 1661, 2024
Eco32I	GATATC	2 cut(s)	24, 2107
Eco47I	GGWCC	7 cut(s)	224, 550, 899, 1319, 1613, 1898, 1957
Eco57I	CTGAAG	2 cut(s)	970, 2262
Eco81I	CCTNAGG	1 cut(s)	430
EcoO109I	RGGNCCY	2 cut(s)	224, 550
EcoRI	GAATTC	1 cut(s)	565
EcoRII	CCWGG	5 cut(s)	204, 246, 400, 1734, 1840
EcoRV	GATATC	2 cut(s)	24, 2107
EcoT14I	CCWWGG	1 cut(s)	436
EcoT22I	ATGCAT	2 cut(s)	103, 1665
EcoT38I	GRGCYC	1 cut(s)	817
ErhI	CCWWGG	1 cut(s)	436
FaqI	GGGAC	5 cut(s)	192, 272, 385, 1496, 1843
FauI	CCCGC	3 cut(s)	453, 741, 1485
FauNDI	CATATG	2 cut(s)	1057, 1572
FbaI	TGATCA	1 cut(s)	363
FblI	GTMKAC	1 cut(s)	1968
Fnu4HI	GCNGC	3 cut(s)	1089, 1099, 2189
FokI	GGATG	4 cut(s)	1700, 2054, 2069, 2225
FriOI	GRGCYC	1 cut(s)	817
Fsp4HI	GCNGC	3 cut(s)	1089, 1099, 2189
GlaI	GCGC	3 cut(s)	316, 1459, 1647
GluI	GCNGC	3 cut(s)	1089, 1099, 2189
GsaI	CCCAGC	2 cut(s)	314, 2252
HaeII	RGCGCY	1 cut(s)	318
HaeIII	GGCC	6 cut(s)	435, 542, 867, 1040, 1306, 1922
HapII	CCGG	4 cut(s)	539, 1083, 1150, 2034
HgaI	GACGC	2 cut(s)	273, 848
HhaI	GCGC	3 cut(s)	317, 1460, 1648
Hin6I	GCGC	3 cut(s)	315, 1458, 1646
HinP1I	GCGC	3 cut(s)	315, 1458, 1646
HincII	GTYRAC	1 cut(s)	1747
HindII	GTYRAC	1 cut(s)	1747
HinfI	GANTC	4 cut(s)	468, 480, 2045, 2120
HpaII	CCGG	4 cut(s)	539, 1083, 1150, 2034
HphI	GGTGA	4 cut(s)	1302, 1402, 2273, 2311
Hpy166II	GTNNAC	5 cut(s)	1322, 1613, 1747, 1809, 1969
Hpy188I	TCNGA	7 cut(s)	276, 571, 838, 949, 1600, 2227, 2281
Hpy188III	TCNNGA	4 cut(s)	988, 1179, 1621, 1724
Hpy8I	GTNNAC	5 cut(s)	1322, 1613, 1747, 1809, 1969
Hpy99I	CGWCG	2 cut(s)	289, 842
HpyAV	CCTTC	4 cut(s)	237, 761, 1522, 2178
HpyCH4III	ACNGT	6 cut(s)	418, 637, 1002, 1813, 1966, 2201
HpyCH4IV	ACGT	3 cut(s)	1212, 1755, 1933
HpyF10VI	GCNNNNNNNGC	5 cut(s)	107, 1455, 1489, 1846, 1928
HpyF3I	CTNAG	6 cut(s)	430, 544, 570, 753, 2069, 2333
HpySE526I	ACGT	3 cut(s)	1212, 1755, 1933
HspAI	GCGC	3 cut(s)	315, 1458, 1646
Ksp22I	TGATCA	1 cut(s)	363
Kzo9I	GATC	6 cut(s)	363, 1623, 1641, 2167, 2256, 2348
LmnI	GCTCC	4 cut(s)	541, 674, 1203, 2245
Lsp1109I	GCAGC	2 cut(s)	1075, 1085
LweI	GCATC	3 cut(s)	1061, 1566, 2128
MabI	ACCWGGT	2 cut(s)	246, 1734
MaeII	ACGT	3 cut(s)	1212, 1755, 1933
MaeIII	GTNAC	7 cut(s)	139, 242, 922, 1078, 1756, 2003, 2261
MalI	GATC	6 cut(s)	365, 1625, 1643, 2169, 2258, 2350
MboI	GATC	6 cut(s)	363, 1623, 1641, 2167, 2256, 2348
MfeI	CAATTG	1 cut(s)	747
MhlI	GDGCHC	1 cut(s)	817
MlyI	GAGTC	2 cut(s)	2054, 2114
MmeI	TCCRAC	3 cut(s)	861, 1795, 2161
Mph1103I	ATGCAT	2 cut(s)	103, 1665
MroXI	GAANNNNTTC	2 cut(s)	954, 1555
MseI	TTAA	5 cut(s)	78, 270, 1295, 1994, 2064
MslI	CAYNNNNRTG	2 cut(s)	359, 1754
MspI	CCGG	4 cut(s)	539, 1083, 1150, 2034
MspR9I	CCNGG	8 cut(s)	206, 248, 402, 1084, 1151, 1736, 1842, 2035
MunI	CAATTG	1 cut(s)	747
Mva1269I	GAATGC	1 cut(s)	379
MvaI	CCWGG	5 cut(s)	206, 248, 402, 1736, 1842
MvnI	CGCG	2 cut(s)	1646, 1911
MwoI	GCNNNNNNNGC	5 cut(s)	107, 1455, 1489, 1846, 1928
NciI	CCSGG	3 cut(s)	1084, 1151, 2035
NdeI	CATATG	2 cut(s)	1057, 1572
NdeII	GATC	6 cut(s)	363, 1623, 1641, 2167, 2256, 2348
NheI	GCTAGC	1 cut(s)	448
NlaIV	GGNNCC	1 cut(s)	225
NmeAIII	GCCGAG	2 cut(s)	127, 1110
NmuCI	GTSAC	3 cut(s)	139, 1756, 2261
NsiI	ATGCAT	2 cut(s)	103, 1665
NspI	RCATGY	3 cut(s)	284, 2195, 2269
NspV	TTCGAA	1 cut(s)	2359
OliI	CACNNNNGTG	1 cut(s)	1754
PaeI	GCATGC	1 cut(s)	2195
PagI	TCATGA	1 cut(s)	1723
PceI	AGGCCT	1 cut(s)	435
PctI	GAATGC	1 cut(s)	379
PdmI	GAANNNNTTC	2 cut(s)	954, 1555
PfeI	GAWTC	2 cut(s)	468, 480
PflFI	GACNNNGTC	1 cut(s)	1855
PflMI	CCANNNNNTGG	2 cut(s)	1741, 1954
PkrI	GCNGC	3 cut(s)	1090, 1100, 2190
PleI	GAGTC	2 cut(s)	2053, 2114
PpsI	GAGTC	2 cut(s)	2053, 2114
Ppu21I	YACGTR	1 cut(s)	1934
PpuMI	RGGWCCY	2 cut(s)	224, 550
PsiI	TTATAA	2 cut(s)	254, 1518
Psp5II	RGGWCCY	2 cut(s)	224, 550
Psp6I	CCWGG	5 cut(s)	204, 246, 400, 1734, 1840
PspFI	CCCAGC	2 cut(s)	310, 2248
PspGI	CCWGG	5 cut(s)	204, 246, 400, 1734, 1840
PspN4I	GGNNCC	1 cut(s)	225
PspPI	GGNCC	9 cut(s)	224, 550, 866, 899, 1304, 1319, 1613, 1898, 1957
PspPPI	RGGWCCY	2 cut(s)	224, 550
PstI	CTGCAG	1 cut(s)	343
PsyI	GACNNNGTC	1 cut(s)	1855
RsaI	GTAC	6 cut(s)	639, 1272, 1500, 1506, 1701, 1810
RsaNI	GTAC	6 cut(s)	638, 1271, 1499, 1505, 1700, 1809
RseI	CAYNNNNRTG	2 cut(s)	359, 1754
SaqAI	TTAA	5 cut(s)	78, 270, 1295, 1994, 2064
SatI	GCNGC	3 cut(s)	1089, 1099, 2189
Sau3AI	GATC	6 cut(s)	363, 1623, 1641, 2167, 2256, 2348
Sau96I	GGNCC	9 cut(s)	224, 550, 866, 899, 1304, 1319, 1613, 1898, 1957
SchI	GAGTC	2 cut(s)	2054, 2114
ScrFI	CCNGG	8 cut(s)	206, 248, 402, 1084, 1151, 1736, 1842, 2035
SduI	GDGCHC	1 cut(s)	817
SexAI	ACCWGGT	2 cut(s)	246, 1734
SfaNI	GCATC	3 cut(s)	1061, 1566, 2128
SfcI	CTRYAG	1 cut(s)	339
SfuI	TTCGAA	1 cut(s)	2359
SinI	GGWCC	7 cut(s)	224, 550, 899, 1319, 1613, 1898, 1957
SmiMI	CAYNNNNRTG	2 cut(s)	359, 1754
SmlI	CTYRAG	2 cut(s)	167, 1606
SmoI	CTYRAG	2 cut(s)	167, 1606
SpeI	ACTAGT	4 cut(s)	805, 1225, 1507, 1822
SphI	GCATGC	1 cut(s)	2195
SseBI	AGGCCT	1 cut(s)	435
SspI	AATATT	2 cut(s)	1140, 1799
StuI	AGGCCT	1 cut(s)	435
StyD4I	CCNGG	8 cut(s)	204, 246, 400, 1082, 1149, 1734, 1840, 2033
StyI	CCWWGG	1 cut(s)	436
TaaI	ACNGT	6 cut(s)	418, 637, 1002, 1813, 1966, 2201
TaiI	ACGT	3 cut(s)	1215, 1758, 1936
TaqI	TCGA	7 cut(s)	31, 1004, 1180, 1365, 2048, 2109, 2359
TatI	WGTACW	3 cut(s)	637, 1504, 1808
TauI	GCSGC	1 cut(s)	2191
TfiI	GAWTC	2 cut(s)	468, 480
Tru1I	TTAA	5 cut(s)	78, 270, 1295, 1994, 2064
Tru9I	TTAA	5 cut(s)	78, 270, 1295, 1994, 2064
TscAI	CASTG	1 cut(s)	702
TseFI	GTSAC	3 cut(s)	139, 1756, 2261
TseI	GCWGC	2 cut(s)	1088, 1098
Tsp45I	GTSAC	3 cut(s)	139, 1756, 2261
TspGWI	ACGGA	1 cut(s)	687
TspRI	CASTG	1 cut(s)	702
Tth111I	GACNNNGTC	1 cut(s)	1855
Van91I	CCANNNNNTGG	2 cut(s)	1741, 1954
VpaK11BI	GGWCC	7 cut(s)	224, 550, 899, 1319, 1613, 1898, 1957
XapI	RAATTY	6 cut(s)	188, 347, 565, 1541, 1555, 2228
XceI	RCATGY	3 cut(s)	284, 2195, 2269
XmiI	GTMKAC	1 cut(s)	1968
XmnI	GAANNNNTTC	2 cut(s)	954, 1555
Zsp2I	ATGCAT	2 cut(s)	103, 1665

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.