Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0001152

Physical Location & Seq

Genomic Coordinates Reverse (-)

7404677 .. 7405117

Gene Structure 441 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000026978

Sequence Viewer

CDS Protein Promoter (2k)

Length: 441 bp

ATGGCGTTGTTTTTCATTGGTGGCCCTGATGACCGCGAGAAGCTAGCCTTTGCAACGCGCTTGACAGGCAATCCGAGAGTGCAAATGACGGTTTTCAGGTTTATTTTGAAGAATAAAGACGAGCTTAGTGGAGAGGAGCAGGATGAGTCATTGATGGAGGAGTATAAGCTGAGACACCTTGAGAACTATGATCGCGTGAATTGGCAAGCTATAAAAGTAAATGATGGTATGCAAGTTTTGGAGGCGATTGGGAAGTTGGAGGGAGAATACGACCTTGTGATGGTGGGACGAAGGCATTCGGAGAGGTCACTGAGGGACGCAGAAATGGTGGACTTGGTGCAGAATCCAGAGCTAGGAGTCATTGGCGACATGCTTGCTTCTGCGGATTTTTGTGATGGGACGGTGAATGTATTGGTGCTGCAAGAAAGCAGAAACTGTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0006810 GO:0006811 GO:0006812 GO:0006885 GO:0008150 GO:0012505 GO:0015672 GO:0042592 GO:0044464 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055067 GO:0055080 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_H_Exchanger

Protein Analysis

147

Amino Acids

16.65

Weight (kDa)

4.66

Isoelectric Point (pI)

35.15

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CHX17_C	PF23259	3 - 142	2.5e-08	Plant cation/H(+) antiporter, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0001152)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g43690 FvH4_7g25211 FvH4_7g25250 FvH4_7g25290 FvH4_7g25310
malus_domestica	MD01G1158700.v1.1 MD01G1158800.v1.1 MD07G1227200.v1.1 MD07G1227600.v1.1
prunus_persica	Prupe.2G257000_v2.0.a1 Prupe.2G257100_v2.0.a1
pyrus_communis	pycom01g17540
rosa_chinensis	RchiOBHm_Chr1g0371191 RchiOBHm_Chr1g0371201 RchiOBHm_Chr1g0371211
rosa_laevigata	RLG00000026978 RLG00000026979 RLG00000026980 RLG00000026981 RLG00000026983 RLG00000036771
rosa_multiflora	Rmu_co8222838.1_g000001 Rmu_sc0000631.1_g000023 Rmu_sc0001018.1_g000042 Rmu_sc0001018.1_g000044 Rmu_sc0001018.1_g000049 Rmu_sc0001018.1_g000050 Rmu_sc0001018.1_g000051 Rmu_sc0008081.1_g000003
rosa_roxburghii	Rroxscaffold_4G00285900 Rroxscaffold_4G00285910
rosa_rugosa	Rorug01G0361700 Rorug01G0361900 Rorug01G0362000 Rorug01G0362200 Rorug05G0460600
rosa_samantha	Rh1AG372000 Rh1AG372200 Rh1AG372300 Rh1BG335100 Rh1BG335500 Rh1BG335700 Rh1BG335800 Rh1CG348600 Rh1CG349000 Rh1CG349100 Rh1CG349200 Rh1DG366500 Rh1DG366900 Rh1DG367000 Rh5BG537300 Rh5CG560800 Rh5DG548900
rosa_wichuraiana	Rw1G032720 Rw1G032730 Rw1G032740 Rw5G047750 Rw5G047880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	3 cut(s)	36, 58, 195
AciI	CCGC	2 cut(s)	34, 383
AfiI	CCNNNNNNNGG	2 cut(s)	280, 353
AgsI	TTSAA	1 cut(s)	109
AluBI	AGCT	5 cut(s)	43, 124, 169, 209, 352
AluI	AGCT	5 cut(s)	43, 124, 169, 209, 352
Alw26I	GTCTC	1 cut(s)	166
AlwNI	CAGNNNCTG	1 cut(s)	435
AoxI	GGCC	1 cut(s)	22
ApeKI	GCWGC	1 cut(s)	418
Asp700I	GAANNNNTTC	1 cut(s)	295
AspLEI	GCGC	1 cut(s)	60
AspS9I	GGNCC	1 cut(s)	23
AsuHPI	GGTGA	1 cut(s)	415
AsuNHI	GCTAGC	1 cut(s)	43
BbvI	GCAGC	1 cut(s)	405
BccI	CCATC	4 cut(s)	148, 218, 274, 389
BcgI	CGANNNNNNTGC	2 cut(s)	356, 390
BcoDI	GTCTC	1 cut(s)	166
BfaI	CTAG	2 cut(s)	44, 353
BisI	GCNGC	1 cut(s)	419
BlsI	GCNGC	1 cut(s)	420
BmgT120I	GGNCC	1 cut(s)	23
BmtI	GCTAGC	1 cut(s)	47
BpuEI	CTTGAG	1 cut(s)	200
Bsc4I	CCNNNNNNNGG	2 cut(s)	280, 353
BseGI	GGATG	1 cut(s)	148
BseLI	CCNNNNNNNGG	2 cut(s)	280, 353
BseMII	CTCAG	2 cut(s)	161, 302
BseRI	GAGGAG	2 cut(s)	149, 173
BseXI	GCAGC	1 cut(s)	405
BsgI	GTGCAG	1 cut(s)	359
Bsh1236I	CGCG	3 cut(s)	36, 58, 195
BshFI	GGCC	1 cut(s)	24
BslFI	GGGAC	3 cut(s)	300, 329, 412
BslI	CCNNNNNNNGG	2 cut(s)	280, 353
BsmAI	GTCTC	1 cut(s)	166
BsmFI	GGGAC	3 cut(s)	300, 329, 412
BsmI	GAATGC	1 cut(s)	295
BsnI	GGCC	1 cut(s)	24
Bsp143I	GATC	1 cut(s)	190
BspACI	CCGC	2 cut(s)	34, 383
BspANI	GGCC	1 cut(s)	24
BspCNI	CTCAG	2 cut(s)	162, 303
BspFNI	CGCG	3 cut(s)	36, 58, 195
BspOI	GCTAGC	1 cut(s)	47
BssMI	GATC	1 cut(s)	190
Bst4CI	ACNGT	3 cut(s)	91, 403, 437
BstC8I	GCNNGC	3 cut(s)	45, 207, 375
BstDEI	CTNAG	3 cut(s)	125, 170, 311
BstF5I	GGATG	1 cut(s)	148
BstFNI	CGCG	3 cut(s)	36, 58, 195
BstHHI	GCGC	1 cut(s)	60
BstKTI	GATC	1 cut(s)	193
BstMAI	GTCTC	1 cut(s)	166
BstMBI	GATC	1 cut(s)	190
BstMWI	GCNNNNNNNGC	1 cut(s)	66
BstNSI	RCATGY	1 cut(s)	373
BstUI	CGCG	3 cut(s)	36, 58, 195
BstV1I	GCAGC	1 cut(s)	405
BsuRI	GGCC	1 cut(s)	24
BtsCI	GGATG	1 cut(s)	148
BtsIMutI	CAGTG	1 cut(s)	308
Cac8I	GCNNGC	3 cut(s)	45, 207, 375
CaiI	CAGNNNCTG	1 cut(s)	435
CfoI	GCGC	1 cut(s)	60
Cfr13I	GGNCC	1 cut(s)	23
CseI	GACGC	1 cut(s)	326
CviAII	CATG	1 cut(s)	370
CviJI	RGCY	7 cut(s)	24, 43, 47, 124, 169, 209, 352
CviKI_1	RGCY	7 cut(s)	24, 43, 47, 124, 169, 209, 352
DdeI	CTNAG	3 cut(s)	125, 170, 311
DpnI	GATC	1 cut(s)	192
DpnII	GATC	1 cut(s)	190
FaeI	CATG	1 cut(s)	373
FaiI	YATR	5 cut(s)	165, 189, 212, 230, 371
FalI	AAGNNNNNCTT	4 cut(s)	32, 64, 108, 140
FaqI	GGGAC	3 cut(s)	300, 329, 412
FatI	CATG	1 cut(s)	369
Fnu4HI	GCNGC	1 cut(s)	419
FokI	GGATG	1 cut(s)	155
Fsp4HI	GCNGC	1 cut(s)	419
FspBI	CTAG	2 cut(s)	44, 353
GlaI	GCGC	1 cut(s)	59
GluI	GCNGC	1 cut(s)	419
HaeIII	GGCC	1 cut(s)	24
HgaI	GACGC	1 cut(s)	326
HhaI	GCGC	1 cut(s)	60
Hin1II	CATG	1 cut(s)	373
Hin6I	GCGC	1 cut(s)	58
HinP1I	GCGC	1 cut(s)	58
HinfI	GANTC	3 cut(s)	146, 343, 357
HphI	GGTGA	1 cut(s)	415
Hpy166II	GTNNAC	1 cut(s)	331
Hpy188I	TCNGA	2 cut(s)	75, 301
Hpy188III	TCNNGA	1 cut(s)	347
Hpy8I	GTNNAC	1 cut(s)	331
HpyAV	CCTTC	1 cut(s)	285
HpyCH4III	ACNGT	3 cut(s)	91, 403, 437
HpyCH4V	TGCA	5 cut(s)	53, 82, 232, 340, 421
HpyF10VI	GCNNNNNNNGC	1 cut(s)	66
HpyF3I	CTNAG	3 cut(s)	125, 170, 311
Hsp92II	CATG	1 cut(s)	373
HspAI	GCGC	1 cut(s)	58
Kzo9I	GATC	1 cut(s)	190
LmnI	GCTCC	1 cut(s)	136
LpnPI	CCDG	5 cut(s)	39, 51, 82, 125, 360
Lsp1109I	GCAGC	1 cut(s)	405
MaeI	CTAG	2 cut(s)	44, 353
MaeIII	GTNAC	1 cut(s)	306
MalI	GATC	1 cut(s)	192
MboI	GATC	1 cut(s)	190
MboII	GAAGA	1 cut(s)	121
MluCI	AATT	1 cut(s)	199
MlyI	GAGTC	2 cut(s)	155, 366
MmeI	TCCRAC	1 cut(s)	237
MnlI	CCTC	6 cut(s)	127, 151, 235, 253, 297, 306
MroXI	GAANNNNTTC	1 cut(s)	295
MseI	TTAA	1 cut(s)	439
Mva1269I	GAATGC	1 cut(s)	295
MvnI	CGCG	3 cut(s)	36, 58, 195
MwoI	GCNNNNNNNGC	1 cut(s)	66
NdeII	GATC	1 cut(s)	190
NheI	GCTAGC	1 cut(s)	43
NlaIII	CATG	1 cut(s)	373
NmuCI	GTSAC	1 cut(s)	306
NspI	RCATGY	1 cut(s)	373
PctI	GAATGC	1 cut(s)	295
PdmI	GAANNNNTTC	1 cut(s)	295
PfeI	GAWTC	1 cut(s)	343
PkrI	GCNGC	1 cut(s)	420
PleI	GAGTC	2 cut(s)	154, 365
PpsI	GAGTC	2 cut(s)	154, 365
PspPI	GGNCC	1 cut(s)	23
PstNI	CAGNNNCTG	1 cut(s)	435
SaqAI	TTAA	1 cut(s)	439
SatI	GCNGC	1 cut(s)	419
Sau3AI	GATC	1 cut(s)	190
Sau96I	GGNCC	1 cut(s)	23
SchI	GAGTC	2 cut(s)	155, 366
SetI	ASST	9 cut(s)	45, 101, 126, 171, 180, 211, 276, 308, 354
SmlI	CTYRAG	1 cut(s)	179
SmoI	CTYRAG	1 cut(s)	179
Sse9I	AATT	1 cut(s)	199
SsiI	CCGC	2 cut(s)	34, 383
SspMI	CTAG	2 cut(s)	44, 353
TaaI	ACNGT	3 cut(s)	91, 403, 437
TasI	AATT	1 cut(s)	199
TfiI	GAWTC	1 cut(s)	343
Tru1I	TTAA	1 cut(s)	439
Tru9I	TTAA	1 cut(s)	439
TscAI	CASTG	1 cut(s)	315
TseFI	GTSAC	1 cut(s)	306
TseI	GCWGC	1 cut(s)	418
Tsp45I	GTSAC	1 cut(s)	306
TspDTI	ATGAA	1 cut(s)	4
TspRI	CASTG	1 cut(s)	315
XceI	RCATGY	1 cut(s)	373
XmnI	GAANNNNTTC	1 cut(s)	295
XspI	CTAG	2 cut(s)	44, 353

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.