Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000001

Orthogroup ID

OG0001152

Physical Location & Seq

Genomic Coordinates Reverse (-)

47747408 .. 47749944

Gene Structure 2537 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug01G0362000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGCGAAGGTCGATTGCGAGTCTGGGTGTGTCCGTCGCGAAGAGCCGAGGGTTTAGCACGAGCTCGTCGCCGGAGAAAATCGTCGCGTCCGTACTCTTCGAGAGGCTCCCGGTTGTTATTCCCAAAATCGATCCCATCGTCTATGCATTTCAGGAGTTCTCGTTTCGGTGGCGACAGCAATATCGACGCAGATACCCGGATGAGCTTTTAGATAAGTCTAATGCTAGGGGAAAAGGAGACTACCAAATTGATTATGTACCGGCTCCACGGATCACTGAAGCTGACAAACAAAATGATAGAAAGTCATTGCAGAGAGCACTTGACAGAAGACTTTATCTTCTTATCTATGGTAACACACCTGGATCTCCTAATGGAAAGCCAGTCTGGCATTTTCCAGAAAAAGTGTACGAGTCTGAGGAGACATTGCGGAAGTGTGCAGAATCTGCATTACAGTCTGTCCTAGGTGATCTGTCCCACACATATTTTGTTGGAAATGCTCCTATGGGACATATTGCAATGGAGTCATCAGAGAATGTGACCGACTCTCCATCTTTCAAGCAATTCTTTTTCAAGTCTCAAGTGATTGCAACAAACAAGTTAAAAATTGGGAAGTGTGAGGATTTTGTTTGGGTGACCAAGGATGAATTGATGGAATATTTTCCTGAGAAAGCTGAGTTCCTCAGCAAGATGATCATTACCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0006810 GO:0006811 GO:0006812 GO:0006885 GO:0008150 GO:0012505 GO:0015672 GO:0042592 GO:0044464 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055067 GO:0055080 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_H_Exchanger

Protein Analysis

233

Amino Acids

26.75

Weight (kDa)

9.07

Isoelectric Point (pI)

51.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001152)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g43690 FvH4_7g25211 FvH4_7g25250 FvH4_7g25290 FvH4_7g25310
malus_domestica	MD01G1158700.v1.1 MD01G1158800.v1.1 MD07G1227200.v1.1 MD07G1227600.v1.1
prunus_persica	Prupe.2G257000_v2.0.a1 Prupe.2G257100_v2.0.a1
pyrus_communis	pycom01g17540
rosa_chinensis	RchiOBHm_Chr1g0371191 RchiOBHm_Chr1g0371201 RchiOBHm_Chr1g0371211
rosa_laevigata	RLG00000026978 RLG00000026979 RLG00000026980 RLG00000026981 RLG00000026983 RLG00000036771
rosa_multiflora	Rmu_co8222838.1_g000001 Rmu_sc0000631.1_g000023 Rmu_sc0001018.1_g000042 Rmu_sc0001018.1_g000044 Rmu_sc0001018.1_g000049 Rmu_sc0001018.1_g000050 Rmu_sc0001018.1_g000051 Rmu_sc0008081.1_g000003
rosa_roxburghii	Rroxscaffold_4G00285900 Rroxscaffold_4G00285910
rosa_rugosa	Rorug01G0361700 Rorug01G0361900 Rorug01G0362000 Rorug01G0362200 Rorug05G0460600
rosa_samantha	Rh1AG372000 Rh1AG372200 Rh1AG372300 Rh1BG335100 Rh1BG335500 Rh1BG335700 Rh1BG335800 Rh1CG348600 Rh1CG349000 Rh1CG349100 Rh1CG349200 Rh1DG366500 Rh1DG366900 Rh1DG367000 Rh5BG537300 Rh5CG560800 Rh5DG548900
rosa_wichuraiana	Rw1G032720 Rw1G032730 Rw1G032740 Rw5G047750 Rw5G047880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	2 cut(s)	38, 86
AciI	CCGC	1 cut(s)	427
AclWI	GGATC	3 cut(s)	125, 278, 370
AcuI	CTGAAG	1 cut(s)	297
AfaI	GTAC	3 cut(s)	93, 258, 407
AgsI	TTSAA	2 cut(s)	556, 571
AjnI	CCWGG	1 cut(s)	358
AluBI	AGCT	4 cut(s)	63, 205, 281, 671
AluI	AGCT	4 cut(s)	63, 205, 281, 671
Alw21I	GWGCWC	2 cut(s)	65, 319
Alw26I	GTCTC	3 cut(s)	231, 413, 579
AlwI	GGATC	3 cut(s)	125, 278, 370
AlwNI	CAGNNNCTG	1 cut(s)	443
Asp700I	GAANNNNTTC	1 cut(s)	657
AspA2I	CCTAGG	1 cut(s)	460
AsuC2I	CCSGG	2 cut(s)	110, 197
AsuHPI	GGTGA	2 cut(s)	476, 643
AvrII	CCTAGG	1 cut(s)	460
BanII	GRGCYC	1 cut(s)	65
BauI	CACGAG	1 cut(s)	58
BbsI	GAAGAC	1 cut(s)	334
Bbv12I	GWGCWC	2 cut(s)	65, 319
BbvCI	CCTCAGC	1 cut(s)	680
BccI	CCATC	3 cut(s)	143, 556, 643
BciT130I	CCWGG	1 cut(s)	360
BclI	TGATCA	1 cut(s)	690
BcnI	CCSGG	2 cut(s)	110, 197
BcoDI	GTCTC	3 cut(s)	231, 413, 579
BfaI	CTAG	2 cut(s)	225, 461
BglI	GCCNNNNNGGC	1 cut(s)	385
BlnI	CCTAGG	1 cut(s)	460
Bme1390I	CCNGG	3 cut(s)	110, 197, 360
BmiI	GGNNCC	2 cut(s)	107, 264
BmrFI	CCNGG	3 cut(s)	110, 197, 360
BpiI	GAAGAC	1 cut(s)	334
Bpu10I	CCTNAGC	1 cut(s)	680
BpuEI	CTTGAG	1 cut(s)	561
BpuMI	CCSGG	2 cut(s)	110, 197
Bsa29I	ATCGAT	1 cut(s)	129
BsaJI	CCNNGG	4 cut(s)	46, 266, 460, 636
BsaXI	ACNNNNNCTCC	4 cut(s)	146, 176, 529, 559
Bse118I	RCCGGY	1 cut(s)	259
Bse1I	ACTGG	1 cut(s)	380
Bse3DI	GCAATG	3 cut(s)	305, 422, 522
BseBI	CCWGG	1 cut(s)	360
BseCI	ATCGAT	1 cut(s)	129
BseDI	CCNNGG	4 cut(s)	46, 266, 460, 636
BseGI	GGATG	2 cut(s)	205, 646
BseMI	GCAATG	3 cut(s)	305, 422, 522
BseMII	CTCAG	4 cut(s)	405, 654, 663, 694
BseNI	ACTGG	1 cut(s)	380
BseRI	GAGGAG	1 cut(s)	431
BsgI	GTGCAG	1 cut(s)	456
Bsh1236I	CGCG	2 cut(s)	38, 86
BshVI	ATCGAT	1 cut(s)	129
BsiHKAI	GWGCWC	2 cut(s)	65, 319
BsiSI	CCGG	4 cut(s)	71, 110, 197, 260
BslFI	GGGAC	2 cut(s)	457, 519
BsmAI	GTCTC	3 cut(s)	231, 413, 579
BsmFI	GGGAC	2 cut(s)	457, 519
Bsp1286I	GDGCHC	2 cut(s)	65, 319
Bsp143I	GATC	5 cut(s)	130, 270, 362, 466, 690
Bsp68I	TCGCGA	1 cut(s)	38
BspACI	CCGC	1 cut(s)	427
BspCNI	CTCAG	4 cut(s)	406, 655, 664, 693
BspDI	ATCGAT	1 cut(s)	129
BspFNI	CGCG	2 cut(s)	38, 86
BspLI	GGNNCC	2 cut(s)	107, 264
BspPI	GGATC	3 cut(s)	125, 278, 370
BspQI	GCTCTTC	1 cut(s)	35
BsrDI	GCAATG	3 cut(s)	305, 422, 522
BsrFI	RCCGGY	1 cut(s)	259
BsrI	ACTGG	1 cut(s)	380
BssAI	RCCGGY	1 cut(s)	259
BssECI	CCNNGG	4 cut(s)	46, 266, 460, 636
BssMI	GATC	5 cut(s)	130, 270, 362, 466, 690
BssSI	CACGAG	1 cut(s)	58
BssT1I	CCWWGG	2 cut(s)	460, 636
Bst2BI	CACGAG	1 cut(s)	58
Bst2UI	CCWGG	1 cut(s)	360
Bst4CI	ACNGT	1 cut(s)	453
Bst6I	CTCTTC	2 cut(s)	35, 101
BstAPI	GCANNNNNTGC	1 cut(s)	443
BstDEI	CTNAG	4 cut(s)	414, 663, 672, 680
BstDSI	CCRYGG	1 cut(s)	266
BstEII	GGTNACC	1 cut(s)	631
BstF5I	GGATG	2 cut(s)	205, 646
BstFNI	CGCG	2 cut(s)	38, 86
BstKTI	GATC	5 cut(s)	133, 273, 365, 469, 693
BstMAI	GTCTC	3 cut(s)	231, 413, 579
BstMBI	GATC	5 cut(s)	130, 270, 362, 466, 690
BstMWI	GCNNNNNNNGC	2 cut(s)	385, 443
BstNI	CCWGG	1 cut(s)	360
BstPI	GGTNACC	1 cut(s)	631
BstSCI	CCNGG	3 cut(s)	108, 195, 358
BstUI	CGCG	2 cut(s)	38, 86
BstV2I	GAAGAC	1 cut(s)	334
BstX2I	RGATCY	1 cut(s)	362
BstYI	RGATCY	1 cut(s)	362
Bsu15I	ATCGAT	1 cut(s)	129
BsuTUI	ATCGAT	1 cut(s)	129
BtgI	CCRYGG	1 cut(s)	266
BtsCI	GGATG	2 cut(s)	205, 646
BtsIMutI	CAGTG	1 cut(s)	273
BtuMI	TCGCGA	1 cut(s)	38
CaiI	CAGNNNCTG	1 cut(s)	443
Cfr10I	RCCGGY	1 cut(s)	259
ClaI	ATCGAT	1 cut(s)	129
CseI	GACGC	2 cut(s)	75, 195
Csp6I	GTAC	3 cut(s)	92, 257, 406
CviJI	RGCY	8 cut(s)	45, 63, 106, 205, 263, 281, 379, 671
CviKI_1	RGCY	8 cut(s)	45, 63, 106, 205, 263, 281, 379, 671
CviQI	GTAC	3 cut(s)	92, 257, 406
DdeI	CTNAG	4 cut(s)	414, 663, 672, 680
DpnI	GATC	5 cut(s)	132, 272, 364, 468, 692
DpnII	GATC	5 cut(s)	130, 270, 362, 466, 690
Eam1104I	CTCTTC	2 cut(s)	35, 101
EarI	CTCTTC	2 cut(s)	35, 101
Ecl136II	GAGCTC	1 cut(s)	63
Eco130I	CCWWGG	2 cut(s)	460, 636
Eco24I	GRGCYC	1 cut(s)	65
Eco53kI	GAGCTC	1 cut(s)	63
Eco57I	CTGAAG	1 cut(s)	297
Eco91I	GGTNACC	1 cut(s)	631
EcoICRI	GAGCTC	1 cut(s)	63
EcoO65I	GGTNACC	1 cut(s)	631
EcoRII	CCWGG	1 cut(s)	358
EcoT14I	CCWWGG	2 cut(s)	460, 636
EcoT22I	ATGCAT	1 cut(s)	148
EcoT38I	GRGCYC	1 cut(s)	65
ErhI	CCWWGG	2 cut(s)	460, 636
FaiI	YATR	6 cut(s)	144, 255, 348, 481, 503, 510
FalI	AAGNNNNNCTT	2 cut(s)	548, 580
FaqI	GGGAC	2 cut(s)	457, 519
FbaI	TGATCA	1 cut(s)	690
FokI	GGATG	2 cut(s)	212, 653
FriOI	GRGCYC	1 cut(s)	65
FspBI	CTAG	2 cut(s)	225, 461
HapII	CCGG	4 cut(s)	71, 110, 197, 260
HgaI	GACGC	2 cut(s)	75, 195
HinfI	GANTC	5 cut(s)	19, 410, 440, 521, 542
HpaII	CCGG	4 cut(s)	71, 110, 197, 260
HphI	GGTGA	2 cut(s)	476, 643
Hpy166II	GTNNAC	1 cut(s)	406
Hpy188I	TCNGA	2 cut(s)	415, 529
Hpy188III	TCNNGA	5 cut(s)	37, 100, 152, 395, 662
Hpy8I	GTNNAC	1 cut(s)	406
Hpy99I	CGWCG	4 cut(s)	38, 70, 86, 189
HpyCH4III	ACNGT	1 cut(s)	453
HpyCH4V	TGCA	6 cut(s)	146, 310, 437, 446, 515, 587
HpyF10VI	GCNNNNNNNGC	2 cut(s)	385, 443
HpyF3I	CTNAG	4 cut(s)	414, 663, 672, 680
Ksp22I	TGATCA	1 cut(s)	690
Kzo9I	GATC	5 cut(s)	130, 270, 362, 466, 690
LguI	GCTCTTC	1 cut(s)	35
LmnI	GCTCC	3 cut(s)	111, 268, 502
MaeI	CTAG	2 cut(s)	225, 461
MaeIII	GTNAC	3 cut(s)	350, 535, 631
MalI	GATC	5 cut(s)	132, 272, 364, 468, 692
MboI	GATC	5 cut(s)	130, 270, 362, 466, 690
MboII	GAAGA	4 cut(s)	52, 88, 329, 339
MflI	RGATCY	1 cut(s)	362
MhlI	GDGCHC	2 cut(s)	65, 319
MluCI	AATT	4 cut(s)	246, 560, 603, 644
MlyI	GAGTC	4 cut(s)	28, 419, 530, 536
MmeI	TCCRAC	1 cut(s)	469
MnlI	CCTC	5 cut(s)	41, 96, 409, 610, 689
Mph1103I	ATGCAT	1 cut(s)	148
MroXI	GAANNNNTTC	1 cut(s)	657
MseI	TTAA	1 cut(s)	599
MspI	CCGG	4 cut(s)	71, 110, 197, 260
MspR9I	CCNGG	3 cut(s)	110, 197, 360
MvaI	CCWGG	1 cut(s)	360
MvnI	CGCG	2 cut(s)	38, 86
MwoI	GCNNNNNNNGC	2 cut(s)	385, 443
NciI	CCSGG	2 cut(s)	110, 197
NdeII	GATC	5 cut(s)	130, 270, 362, 466, 690
NlaIV	GGNNCC	2 cut(s)	107, 264
NmeAIII	GCCGAG	1 cut(s)	71
NmuCI	GTSAC	2 cut(s)	535, 631
NruI	TCGCGA	1 cut(s)	38
NsiI	ATGCAT	1 cut(s)	148
PciSI	GCTCTTC	1 cut(s)	35
PcsI	WCGNNNNNNNCGW	2 cut(s)	87, 135
PdmI	GAANNNNTTC	1 cut(s)	657
PfeI	GAWTC	1 cut(s)	440
PleI	GAGTC	4 cut(s)	27, 418, 529, 536
PpsI	GAGTC	4 cut(s)	27, 418, 529, 536
Psp124BI	GAGCTC	1 cut(s)	65
Psp6I	CCWGG	1 cut(s)	358
PspEI	GGTNACC	1 cut(s)	631
PspGI	CCWGG	1 cut(s)	358
PspN4I	GGNNCC	2 cut(s)	107, 264
PstNI	CAGNNNCTG	1 cut(s)	443
PsuI	RGATCY	1 cut(s)	362
RruI	TCGCGA	1 cut(s)	38
RsaI	GTAC	3 cut(s)	93, 258, 407
RsaNI	GTAC	3 cut(s)	92, 257, 406
SacI	GAGCTC	1 cut(s)	65
SapI	GCTCTTC	1 cut(s)	35
SaqAI	TTAA	1 cut(s)	599
Sau3AI	GATC	5 cut(s)	130, 270, 362, 466, 690
SchI	GAGTC	4 cut(s)	28, 419, 530, 536
ScrFI	CCNGG	3 cut(s)	110, 197, 360
SduI	GDGCHC	2 cut(s)	65, 319
SetI	ASST	8 cut(s)	11, 65, 207, 283, 361, 466, 673, 701
SmlI	CTYRAG	1 cut(s)	576
SmoI	CTYRAG	1 cut(s)	576
Sse9I	AATT	4 cut(s)	246, 560, 603, 644
SsiI	CCGC	1 cut(s)	427
SspI	AATATT	1 cut(s)	656
SspMI	CTAG	2 cut(s)	225, 461
SstI	GAGCTC	1 cut(s)	65
StyD4I	CCNGG	3 cut(s)	108, 195, 358
StyI	CCWWGG	2 cut(s)	460, 636
TaaI	ACNGT	1 cut(s)	453
TaqI	TCGA	4 cut(s)	11, 99, 129, 184
TaqII	GACCGA	1 cut(s)	554
TasI	AATT	4 cut(s)	246, 560, 603, 644
TfiI	GAWTC	1 cut(s)	440
Tru1I	TTAA	1 cut(s)	599
Tru9I	TTAA	1 cut(s)	599
TscAI	CASTG	1 cut(s)	280
TseFI	GTSAC	2 cut(s)	535, 631
Tsp45I	GTSAC	2 cut(s)	535, 631
TspDTI	ATGAA	1 cut(s)	657
TspGWI	ACGGA	3 cut(s)	22, 79, 283
TspRI	CASTG	1 cut(s)	280
XmaJI	CCTAGG	1 cut(s)	460
XmnI	GAANNNNTTC	1 cut(s)	657
XspI	CTAG	2 cut(s)	225, 461
Zsp2I	ATGCAT	1 cut(s)	148

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.