Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0001152

Physical Location & Seq

Genomic Coordinates Forward (+)

84768090 .. 84769483

Gene Structure 1394 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG537300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1011 bp

ATGACTGTAACACCAATTGTACAATTCTCATACACTCCTCAAAAACAACTCCGAAGATCAACCAAAGATTCACAGGTCAGAAACATCCAATCACAACGAAATAACCTCGGAACTTTTCAGATTCTTTGTTGTGTTCACAATGAAGAAAGTGCCTGCAGCATCATCACCTTCTTAGACGCTTCAAATCCAACAGAAGCAAGCCCCATATGCATGTACATTGTCCACGTAGTTGATTTAATTGGCAGTTCTGCACCACAATTGACACCTTACAAGAAGAAAACGAAATTTAGGCGGTTGGATTCACCTACACATCAAATGATGCGGGCCTTCGAGAATTACTCAGAAAACTCAAGAGGACCAGTGATAATTCATCCATATACTATGGTGGCTCCTTATAAATCCATGCACGAGACCATTTTTCGTTTAGCTCGGGAAAAGCTCGCTCCTCTGATTATCATCTCATTCCCTGATATCCAACACCAGTCTATTGTTGGCACTGCTCCCACTAGCCCCATACGCCAATTGAACCTTAATTTACAACAATTTTCTCAGTGTACAATTGGAATACTAGTTGACAAAGGCTTGCCTTGTCGACCAAGTGTCACCAACTTCTCTTACATTGTGGCCGTATTTTTCATTGGTGGACCAGATGACCGTGAGACATTAGCATATGCATCACGCATGGCAGACAACCCTGACGTGGGCATCACAGTGTTCAGGATTCTCGTGCGTATCAAGAAGATAGACAGTTCTGAGGAAGAGGAGAGAGAGTTTAAGCTAGACGAGTCACTGTTGGATGAGTTTAAGCTAAGAAACACCGGGAATGATAGGTTGAATTGGCGTGATATTGAGGTGGATGATGGTGTTGAGACTGTTGAGGCTGTGAAGGCTATTAAAAATTTTCAGGGTGAGTACGACCCAGTGATGGTGGGGCGGCGACATTTGGATGTGTCGTTGAGGGATGAAGAAATGGCAGACTTATTGCACAATCCAGAGCTGGGAGTGACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0006810 GO:0006811 GO:0006812 GO:0006885 GO:0008150 GO:0012505 GO:0015672 GO:0042592 GO:0044464 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055067 GO:0055080 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_H_Exchanger

Protein Analysis

336

Amino Acids

38.19

Weight (kDa)

5.95

Isoelectric Point (pI)

50.02

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CHX17_C	PF23259	207 - 312	6.5e-08	Plant cation/H(+) antiporter, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001152)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g43690 FvH4_7g25211 FvH4_7g25250 FvH4_7g25290 FvH4_7g25310
malus_domestica	MD01G1158700.v1.1 MD01G1158800.v1.1 MD07G1227200.v1.1 MD07G1227600.v1.1
prunus_persica	Prupe.2G257000_v2.0.a1 Prupe.2G257100_v2.0.a1
pyrus_communis	pycom01g17540
rosa_chinensis	RchiOBHm_Chr1g0371191 RchiOBHm_Chr1g0371201 RchiOBHm_Chr1g0371211
rosa_laevigata	RLG00000026978 RLG00000026979 RLG00000026980 RLG00000026981 RLG00000026983 RLG00000036771
rosa_multiflora	Rmu_co8222838.1_g000001 Rmu_sc0000631.1_g000023 Rmu_sc0001018.1_g000042 Rmu_sc0001018.1_g000044 Rmu_sc0001018.1_g000049 Rmu_sc0001018.1_g000050 Rmu_sc0001018.1_g000051 Rmu_sc0008081.1_g000003
rosa_roxburghii	Rroxscaffold_4G00285900 Rroxscaffold_4G00285910
rosa_rugosa	Rorug01G0361700 Rorug01G0361900 Rorug01G0362000 Rorug01G0362200 Rorug05G0460600
rosa_samantha	Rh1AG372000 Rh1AG372200 Rh1AG372300 Rh1BG335100 Rh1BG335500 Rh1BG335700 Rh1BG335800 Rh1CG348600 Rh1CG349000 Rh1CG349100 Rh1CG349200 Rh1DG366500 Rh1DG366900 Rh1DG367000 Rh5BG537300 Rh5CG560800 Rh5DG548900
rosa_wichuraiana	Rw1G032720 Rw1G032730 Rw1G032740 Rw5G047750 Rw5G047880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	396
AccI	GTMKAC	1 cut(s)	592
AciI	CCGC	3 cut(s)	292, 322, 934
AcoI	YGGCCR	1 cut(s)	624
AcsI	RAATTY	2 cut(s)	284, 898
AfaI	GTAC	4 cut(s)	21, 215, 556, 914
AfiI	CCNNNNNNNGG	4 cut(s)	700, 701, 925, 998
AgsI	TTSAA	3 cut(s)	183, 526, 835
AhdI	GACNNNNNGTC	1 cut(s)	599
AhlI	ACTAGT	1 cut(s)	568
AjiI	CACGTC	1 cut(s)	700
AluBI	AGCT	5 cut(s)	428, 439, 778, 808, 997
AluI	AGCT	5 cut(s)	428, 439, 778, 808, 997
Alw26I	GTCTC	3 cut(s)	404, 653, 863
Ama87I	CYCGRG	1 cut(s)	429
AoxI	GGCC	2 cut(s)	324, 624
ApeKI	GCWGC	1 cut(s)	156
ApoI	RAATTY	2 cut(s)	284, 898
AspS9I	GGNCC	3 cut(s)	324, 356, 644
AsuC2I	CCSGG	1 cut(s)	820
AsuHPI	GGTGA	4 cut(s)	157, 294, 595, 920
AvaI	CYCGRG	1 cut(s)	429
AvaII	GGWCC	2 cut(s)	356, 644
BauI	CACGAG	2 cut(s)	407, 725
BbvI	GCAGC	1 cut(s)	168
BccI	CCATC	2 cut(s)	854, 919
BceAI	ACGGC	1 cut(s)	611
BcnI	CCSGG	1 cut(s)	820
BcoDI	GTCTC	3 cut(s)	404, 653, 863
BcuI	ACTAGT	1 cut(s)	568
BfaI	CTAG	3 cut(s)	507, 569, 779
BfmI	CTRYAG	1 cut(s)	154
BisI	GCNGC	2 cut(s)	157, 935
BlsI	GCNGC	2 cut(s)	158, 936
Bme1390I	CCNGG	1 cut(s)	820
Bme18I	GGWCC	2 cut(s)	356, 644
BmeRI	GACNNNNNGTC	1 cut(s)	599
BmeT110I	CYCGRG	1 cut(s)	429
BmgBI	CACGTC	1 cut(s)	700
BmgT120I	GGNCC	3 cut(s)	324, 356, 644
BmiI	GGNNCC	1 cut(s)	390
BmrFI	CCNGG	1 cut(s)	820
BmrI	ACTGGG	1 cut(s)	914
BmsI	GCATC	4 cut(s)	168, 309, 683, 714
BmuI	ACTGGG	1 cut(s)	914
BplI	GAGNNNNNCTC	2 cut(s)	323, 355
BpuEI	CTTGAG	1 cut(s)	334
BpuMI	CCSGG	1 cut(s)	820
BsaAI	YACGTR	1 cut(s)	226
BsaBI	GATNNNNATC	1 cut(s)	455
BsaI	GGTCTC	1 cut(s)	404
BsaJI	CCNNGG	1 cut(s)	106
BsaXI	ACNNNNNCTCC	2 cut(s)	755, 785
Bsc4I	CCNNNNNNNGG	4 cut(s)	700, 701, 925, 998
Bse1I	ACTGG	3 cut(s)	359, 481, 920
Bse8I	GATNNNNATC	1 cut(s)	455
BseDI	CCNNGG	1 cut(s)	106
BseGI	GGATG	6 cut(s)	84, 370, 802, 862, 952, 967
BseJI	GATNNNNATC	1 cut(s)	455
BseLI	CCNNNNNNNGG	4 cut(s)	700, 701, 925, 998
BseMII	CTCAG	3 cut(s)	354, 563, 744
BseNI	ACTGG	3 cut(s)	359, 481, 920
BseRI	GAGGAG	3 cut(s)	27, 435, 776
BseXI	GCAGC	1 cut(s)	168
BseYI	CCCAGC	1 cut(s)	997
BsgI	GTGCAG	1 cut(s)	234
BshFI	GGCC	2 cut(s)	326, 626
BsiHKCI	CYCGRG	1 cut(s)	429
BsiSI	CCGG	1 cut(s)	819
BslI	CCNNNNNNNGG	4 cut(s)	700, 701, 925, 998
BsmAI	GTCTC	3 cut(s)	404, 653, 863
BsnI	GGCC	2 cut(s)	326, 626
Bso31I	GGTCTC	1 cut(s)	404
BsoBI	CYCGRG	1 cut(s)	429
Bsp1407I	TGTACA	3 cut(s)	19, 213, 554
Bsp143I	GATC	1 cut(s)	56
BspACI	CCGC	3 cut(s)	292, 322, 934
BspANI	GGCC	2 cut(s)	326, 626
BspCNI	CTCAG	3 cut(s)	353, 562, 745
BspLI	GGNNCC	1 cut(s)	390
BspMAI	CTGCAG	1 cut(s)	158
BspTNI	GGTCTC	1 cut(s)	404
BsrGI	TGTACA	3 cut(s)	19, 213, 554
BsrI	ACTGG	3 cut(s)	359, 481, 920
BssECI	CCNNGG	1 cut(s)	106
BssMI	GATC	1 cut(s)	56
BssSI	CACGAG	2 cut(s)	407, 725
Bst2BI	CACGAG	2 cut(s)	407, 725
Bst4CI	ACNGT	6 cut(s)	7, 656, 712, 749, 792, 874
Bst6I	CTCTTC	1 cut(s)	753
BstAUI	TGTACA	3 cut(s)	19, 213, 554
BstBAI	YACGTR	1 cut(s)	226
BstC8I	GCNNGC	5 cut(s)	154, 199, 324, 441, 584
BstDEI	CTNAG	5 cut(s)	172, 340, 549, 753, 809
BstF5I	GGATG	6 cut(s)	84, 370, 802, 862, 952, 967
BstKTI	GATC	1 cut(s)	59
BstMAI	GTCTC	3 cut(s)	404, 653, 863
BstMBI	GATC	1 cut(s)	56
BstMWI	GCNNNNNNNGC	3 cut(s)	207, 516, 887
BstNSI	RCATGY	1 cut(s)	214
BstSCI	CCNGG	1 cut(s)	818
BstSFI	CTRYAG	1 cut(s)	154
BstV1I	GCAGC	1 cut(s)	168
BsuRI	GGCC	2 cut(s)	326, 626
BtrI	CACGTC	1 cut(s)	700
BtsCI	GGATG	6 cut(s)	84, 370, 802, 862, 952, 967
BtsI	GCAGTG	1 cut(s)	495
BtsIMutI	CAGTG	6 cut(s)	366, 495, 557, 717, 788, 927
Cac8I	GCNNGC	5 cut(s)	154, 199, 324, 441, 584
Cfr13I	GGNCC	3 cut(s)	324, 356, 644
CseI	GACGC	1 cut(s)	185
Csp6I	GTAC	4 cut(s)	20, 214, 555, 913
CviAII	CATG	4 cut(s)	211, 403, 682, 1008
CviQI	GTAC	4 cut(s)	20, 214, 555, 913
DdeI	CTNAG	5 cut(s)	172, 340, 549, 753, 809
DpnI	GATC	1 cut(s)	58
DpnII	GATC	1 cut(s)	56
DriI	GACNNNNNGTC	1 cut(s)	599
EaeI	YGGCCR	1 cut(s)	624
Eam1104I	CTCTTC	1 cut(s)	753
Eam1105I	GACNNNNNGTC	1 cut(s)	599
EarI	CTCTTC	1 cut(s)	753
Eco31I	GGTCTC	1 cut(s)	404
Eco32I	GATATC	1 cut(s)	472
Eco47I	GGWCC	2 cut(s)	356, 644
Eco88I	CYCGRG	1 cut(s)	429
EcoRV	GATATC	1 cut(s)	472
EcoT22I	ATGCAT	2 cut(s)	212, 676
FaeI	CATG	4 cut(s)	214, 406, 685, 1011
FatI	CATG	4 cut(s)	210, 402, 681, 1007
FauI	CCCGC	1 cut(s)	315
FauNDI	CATATG	2 cut(s)	206, 670
FblI	GTMKAC	1 cut(s)	592
Fnu4HI	GCNGC	2 cut(s)	157, 935
FokI	GGATG	6 cut(s)	71, 357, 809, 869, 959, 974
Fsp4HI	GCNGC	2 cut(s)	157, 935
FspBI	CTAG	3 cut(s)	507, 569, 779
GluI	GCNGC	2 cut(s)	157, 935
GsaI	CCCAGC	1 cut(s)	1001
HaeIII	GGCC	2 cut(s)	326, 626
HapII	CCGG	1 cut(s)	819
HgaI	GACGC	1 cut(s)	185
Hin1II	CATG	4 cut(s)	214, 406, 685, 1011
HincII	GTYRAC	2 cut(s)	574, 593
HindII	GTYRAC	2 cut(s)	574, 593
HinfI	GANTC	5 cut(s)	68, 121, 299, 721, 785
HpaII	CCGG	1 cut(s)	819
HphI	GGTGA	4 cut(s)	157, 294, 595, 920
Hpy166II	GTNNAC	6 cut(s)	136, 223, 555, 574, 593, 644
Hpy188I	TCNGA	7 cut(s)	53, 80, 110, 120, 343, 450, 754
Hpy188III	TCNNGA	6 cut(s)	331, 351, 431, 718, 736, 992
Hpy8I	GTNNAC	6 cut(s)	136, 223, 555, 574, 593, 644
HpyAV	CCTTC	3 cut(s)	178, 337, 880
HpyCH4III	ACNGT	6 cut(s)	7, 656, 712, 749, 792, 874
HpyCH4IV	ACGT	2 cut(s)	225, 699
HpyCH4V	TGCA	6 cut(s)	156, 210, 251, 406, 674, 985
HpyF10VI	GCNNNNNNNGC	3 cut(s)	207, 516, 887
HpyF3I	CTNAG	5 cut(s)	172, 340, 549, 753, 809
HpySE526I	ACGT	2 cut(s)	225, 699
Hsp92II	CATG	4 cut(s)	214, 406, 685, 1011
Kzo9I	GATC	1 cut(s)	56
LmnI	GCTCC	3 cut(s)	394, 448, 505
Lsp1109I	GCAGC	1 cut(s)	168
LweI	GCATC	4 cut(s)	168, 309, 683, 714
MaeI	CTAG	3 cut(s)	507, 569, 779
MaeII	ACGT	2 cut(s)	225, 699
MaeIII	GTNAC	4 cut(s)	7, 601, 786, 1003
MalI	GATC	1 cut(s)	58
MboI	GATC	1 cut(s)	56
MboII	GAAGA	6 cut(s)	66, 155, 286, 751, 770, 977
MfeI	CAATTG	4 cut(s)	15, 257, 521, 558
MlyI	GAGTC	1 cut(s)	794
MmeI	TCCRAC	4 cut(s)	212, 276, 499, 774
MnlI	CCTC	9 cut(s)	48, 116, 347, 456, 748, 754, 844, 871, 951
Mph1103I	ATGCAT	2 cut(s)	212, 676
MseI	TTAA	5 cut(s)	236, 531, 774, 804, 894
MslI	CAYNNNNRTG	3 cut(s)	209, 710, 945
MspI	CCGG	1 cut(s)	819
MspR9I	CCNGG	1 cut(s)	820
MunI	CAATTG	4 cut(s)	15, 257, 521, 558
MwoI	GCNNNNNNNGC	3 cut(s)	207, 516, 887
NciI	CCSGG	1 cut(s)	820
NdeI	CATATG	2 cut(s)	206, 670
NdeII	GATC	1 cut(s)	56
NlaIII	CATG	4 cut(s)	214, 406, 685, 1011
NlaIV	GGNNCC	1 cut(s)	390
NmuCI	GTSAC	3 cut(s)	601, 786, 1003
NsiI	ATGCAT	2 cut(s)	212, 676
NspI	RCATGY	1 cut(s)	214
PfeI	GAWTC	4 cut(s)	68, 121, 299, 721
PkrI	GCNGC	2 cut(s)	158, 936
PleI	GAGTC	1 cut(s)	793
PpsI	GAGTC	1 cut(s)	793
Ppu21I	YACGTR	1 cut(s)	226
PsiI	TTATAA	1 cut(s)	396
PspFI	CCCAGC	1 cut(s)	997
PspN4I	GGNNCC	1 cut(s)	390
PspPI	GGNCC	3 cut(s)	324, 356, 644
PstI	CTGCAG	1 cut(s)	158
RsaI	GTAC	4 cut(s)	21, 215, 556, 914
RsaNI	GTAC	4 cut(s)	20, 214, 555, 913
RseI	CAYNNNNRTG	3 cut(s)	209, 710, 945
SalI	GTCGAC	1 cut(s)	591
SaqAI	TTAA	5 cut(s)	236, 531, 774, 804, 894
SatI	GCNGC	2 cut(s)	157, 935
Sau3AI	GATC	1 cut(s)	56
Sau96I	GGNCC	3 cut(s)	324, 356, 644
SchI	GAGTC	1 cut(s)	794
ScrFI	CCNGG	1 cut(s)	820
SfaNI	GCATC	4 cut(s)	168, 309, 683, 714
SfcI	CTRYAG	1 cut(s)	154
SinI	GGWCC	2 cut(s)	356, 644
SmiMI	CAYNNNNRTG	3 cut(s)	209, 710, 945
SmlI	CTYRAG	1 cut(s)	349
SmoI	CTYRAG	1 cut(s)	349
SpeI	ACTAGT	1 cut(s)	568
SsiI	CCGC	3 cut(s)	292, 322, 934
SspMI	CTAG	3 cut(s)	507, 569, 779
StyD4I	CCNGG	1 cut(s)	818
TaaI	ACNGT	6 cut(s)	7, 656, 712, 749, 792, 874
TaiI	ACGT	2 cut(s)	228, 702
TaqI	TCGA	2 cut(s)	330, 592
TatI	WGTACW	3 cut(s)	19, 213, 554
TauI	GCSGC	1 cut(s)	937
TfiI	GAWTC	4 cut(s)	68, 121, 299, 721
Tru1I	TTAA	5 cut(s)	236, 531, 774, 804, 894
Tru9I	TTAA	5 cut(s)	236, 531, 774, 804, 894
TscAI	CASTG	6 cut(s)	366, 502, 557, 717, 795, 927
TseFI	GTSAC	3 cut(s)	601, 786, 1003
TseI	GCWGC	1 cut(s)	156
Tsp45I	GTSAC	3 cut(s)	601, 786, 1003
TspDTI	ATGAA	4 cut(s)	156, 359, 625, 978
TspRI	CASTG	6 cut(s)	366, 502, 557, 717, 795, 927
VpaK11BI	GGWCC	2 cut(s)	356, 644
XapI	RAATTY	2 cut(s)	284, 898
XceI	RCATGY	1 cut(s)	214
XcmI	CCANNNNNNNNNTGG	1 cut(s)	488
XmiI	GTMKAC	1 cut(s)	592
XspI	CTAG	3 cut(s)	507, 569, 779
Zsp2I	ATGCAT	2 cut(s)	212, 676

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.