Rorug05G0460600

cation H( ) antiporter 15-like

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
63428922 .. 63431575
2654 bp
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UTR
Exon/CDS
Intron
Rorug05G0460600.1

Sequence Viewer

Length: 240 bp
ATGGGTCGCAAAGCAGGTTCGATATACATTAATCCAAAGAAATTTGGTGCTTTTCACAAACCTTGCATGAAGGAAATGGTAACATTTCTCAGTTGCTTGGCTCTTAACAGCAACTGTGATGAGAAGTGTGTAAGGCAGAAGGACCTTTTGAGTACTTGCATGGATTCTCAGAGCAAGAAAAACAAGTCAATGGGAAGCATTAATTACCACTTGCAGAGGCTAAGCAGGGGAAGGAAGTAG

Protein Analysis

79

Amino Acids

8.99

Weight (kDa)

9.87

Isoelectric Point (pI)

48.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CX9C PF16860 20 - 57 3.2e-08 CHCH-CHCH-like Cx9C, IMS import disulfide relay-system,
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 5
AcsI RAATTY 1 cut(s) 41
AfaI GTAC 1 cut(s) 154
AlwNI CAGNNNCTG 1 cut(s) 114
ApoI RAATTY 1 cut(s) 41
AseI ATTAAT 2 cut(s) 30, 201
AspS9I GGNCC 1 cut(s) 142
AvaII GGWCC 1 cut(s) 142
BfuAI ACCTGC 1 cut(s) 5
BlpI GCTNAGC 1 cut(s) 221
BmcAI AGTACT 1 cut(s) 154
Bme18I GGWCC 1 cut(s) 142
BmgT120I GGNCC 1 cut(s) 142
Bpu1102I GCTNAGC 1 cut(s) 221
BseMII CTCAG 2 cut(s) 103, 182
Bsp1720I GCTNAGC 1 cut(s) 221
BspCNI CTCAG 2 cut(s) 102, 181
BspMI ACCTGC 1 cut(s) 5
Bst4CI ACNGT 1 cut(s) 116
BstDEI CTNAG 3 cut(s) 89, 168, 221
BveI ACCTGC 1 cut(s) 5
CaiI CAGNNNCTG 1 cut(s) 114
Cfr13I GGNCC 1 cut(s) 142
Csp6I GTAC 1 cut(s) 153
CviAII CATG 2 cut(s) 67, 160
CviJI RGCY 2 cut(s) 101, 220
CviKI_1 RGCY 2 cut(s) 101, 220
CviQI GTAC 1 cut(s) 153
DdeI CTNAG 3 cut(s) 89, 168, 221
Eco47I GGWCC 1 cut(s) 142
EcoO109I RGGNCCY 1 cut(s) 142
FaeI CATG 2 cut(s) 70, 163
FaiI YATR 3 cut(s) 25, 68, 161
FatI CATG 2 cut(s) 66, 159
Hin1II CATG 2 cut(s) 70, 163
HinfI GANTC 1 cut(s) 164
Hpy188I TCNGA 1 cut(s) 171
HpyAV CCTTC 3 cut(s) 64, 133, 225
HpyCH4III ACNGT 1 cut(s) 116
HpyCH4V TGCA 3 cut(s) 66, 159, 214
HpyF3I CTNAG 3 cut(s) 89, 168, 221
Hsp92II CATG 2 cut(s) 70, 163
LpnPI CCDG 1 cut(s) 211
MaeIII GTNAC 1 cut(s) 79
MluCI AATT 2 cut(s) 41, 202
MnlI CCTC 1 cut(s) 210
MseI TTAA 3 cut(s) 30, 105, 201
NlaIII CATG 2 cut(s) 70, 163
PfeI GAWTC 1 cut(s) 164
PpuMI RGGWCCY 1 cut(s) 142
PshBI ATTAAT 2 cut(s) 30, 201
Psp5II RGGWCCY 1 cut(s) 142
PspPI GGNCC 1 cut(s) 142
PspPPI RGGWCCY 1 cut(s) 142
PstNI CAGNNNCTG 1 cut(s) 114
RsaI GTAC 1 cut(s) 154
RsaNI GTAC 1 cut(s) 153
SaqAI TTAA 3 cut(s) 30, 105, 201
Sau96I GGNCC 1 cut(s) 142
ScaI AGTACT 1 cut(s) 154
SetI ASST 3 cut(s) 19, 64, 147
SgeI CNNG 9 cut(s) 27, 75, 79, 109, 168, 172, 187, 196, 223
SinI GGWCC 1 cut(s) 142
Sse9I AATT 2 cut(s) 41, 202
TaaI ACNGT 1 cut(s) 116
TaqI TCGA 1 cut(s) 20
TasI AATT 2 cut(s) 41, 202
TatI WGTACW 1 cut(s) 152
TfiI GAWTC 1 cut(s) 164
Tru1I TTAA 3 cut(s) 30, 105, 201
Tru9I TTAA 3 cut(s) 30, 105, 201
TspDTI ATGAA 1 cut(s) 83
VpaK11BI GGWCC 1 cut(s) 142
VspI ATTAAT 2 cut(s) 30, 201
XapI RAATTY 1 cut(s) 41
ZrmI AGTACT 1 cut(s) 154
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.