Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001018.1

Orthogroup ID

OG0001152

Physical Location & Seq

Genomic Coordinates Forward (+)

215965 .. 216174

Gene Structure 210 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0001018.1_g000051.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 210 bp

atgaaagtaaatgatggtgtgcaagttttggaggcgattgggaagttggagggagaatacgaccttgtgatggtgggacgaaggcattcggagatgtcattgacggacgaagaaatggtggatttggtgcagaattcagagctaggagtcattggcgacatgcttgcttctgcggatttttgtgatgggacactgaatgttgtagaatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0006810 GO:0006811 GO:0006812 GO:0006885 GO:0008150 GO:0012505 GO:0015672 GO:0042592 GO:0044464 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055067 GO:0055080 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_H_Exchanger

Protein Analysis

69

Amino Acids

7.52

Weight (kDa)

4.06

Isoelectric Point (pI)

31.01

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001152)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g43690 FvH4_7g25211 FvH4_7g25250 FvH4_7g25290 FvH4_7g25310
malus_domestica	MD01G1158700.v1.1 MD01G1158800.v1.1 MD07G1227200.v1.1 MD07G1227600.v1.1
prunus_persica	Prupe.2G257000_v2.0.a1 Prupe.2G257100_v2.0.a1
pyrus_communis	pycom01g17540
rosa_chinensis	RchiOBHm_Chr1g0371191 RchiOBHm_Chr1g0371201 RchiOBHm_Chr1g0371211
rosa_laevigata	RLG00000026978 RLG00000026979 RLG00000026980 RLG00000026981 RLG00000026983 RLG00000036771
rosa_multiflora	Rmu_co8222838.1_g000001 Rmu_sc0000631.1_g000023 Rmu_sc0001018.1_g000042 Rmu_sc0001018.1_g000044 Rmu_sc0001018.1_g000049 Rmu_sc0001018.1_g000050 Rmu_sc0001018.1_g000051 Rmu_sc0008081.1_g000003
rosa_roxburghii	Rroxscaffold_4G00285900 Rroxscaffold_4G00285910
rosa_rugosa	Rorug01G0361700 Rorug01G0361900 Rorug01G0362000 Rorug01G0362200 Rorug05G0460600
rosa_samantha	Rh1AG372000 Rh1AG372200 Rh1AG372300 Rh1BG335100 Rh1BG335500 Rh1BG335700 Rh1BG335800 Rh1CG348600 Rh1CG349000 Rh1CG349100 Rh1CG349200 Rh1DG366500 Rh1DG366900 Rh1DG367000 Rh5BG537300 Rh5CG560800 Rh5DG548900
rosa_wichuraiana	Rw1G032720 Rw1G032730 Rw1G032740 Rw5G047750 Rw5G047880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	173
AcsI	RAATTY	1 cut(s)	133
AfiI	CCNNNNNNNGG	1 cut(s)	70
AluBI	AGCT	1 cut(s)	142
AluI	AGCT	1 cut(s)	142
ApoI	RAATTY	1 cut(s)	133
Asp700I	GAANNNNTTC	1 cut(s)	85
BccI	CCATC	3 cut(s)	8, 64, 179
BcgI	CGANNNNNNTGC	2 cut(s)	146, 180
BfaI	CTAG	1 cut(s)	143
Bsc4I	CCNNNNNNNGG	1 cut(s)	70
BseLI	CCNNNNNNNGG	1 cut(s)	70
BsgI	GTGCAG	1 cut(s)	149
BslFI	GGGAC	2 cut(s)	90, 202
BslI	CCNNNNNNNGG	1 cut(s)	70
BsmFI	GGGAC	2 cut(s)	90, 202
BsmI	GAATGC	1 cut(s)	85
BspACI	CCGC	1 cut(s)	173
BstC8I	GCNNGC	1 cut(s)	165
BstNSI	RCATGY	1 cut(s)	163
BtsIMutI	CAGTG	1 cut(s)	191
Cac8I	GCNNGC	1 cut(s)	165
CviAII	CATG	1 cut(s)	160
CviJI	RGCY	1 cut(s)	142
CviKI_1	RGCY	1 cut(s)	142
EcoRI	GAATTC	1 cut(s)	133
FaeI	CATG	1 cut(s)	163
FaiI	YATR	1 cut(s)	161
FaqI	GGGAC	2 cut(s)	90, 202
FatI	CATG	1 cut(s)	159
FspBI	CTAG	1 cut(s)	143
Hin1II	CATG	1 cut(s)	163
HinfI	GANTC	1 cut(s)	147
Hpy188I	TCNGA	2 cut(s)	91, 139
HpyAV	CCTTC	1 cut(s)	75
HpyCH4V	TGCA	2 cut(s)	22, 130
Hsp92II	CATG	1 cut(s)	163
MaeI	CTAG	1 cut(s)	143
MboII	GAAGA	1 cut(s)	122
MluCI	AATT	1 cut(s)	133
MlyI	GAGTC	1 cut(s)	156
MmeI	TCCRAC	1 cut(s)	27
MnlI	CCTC	2 cut(s)	25, 43
MroXI	GAANNNNTTC	1 cut(s)	85
Mva1269I	GAATGC	1 cut(s)	85
NlaIII	CATG	1 cut(s)	163
NspI	RCATGY	1 cut(s)	163
PctI	GAATGC	1 cut(s)	85
PdmI	GAANNNNTTC	1 cut(s)	85
PleI	GAGTC	1 cut(s)	155
PpsI	GAGTC	1 cut(s)	155
SchI	GAGTC	1 cut(s)	156
SetI	ASST	2 cut(s)	66, 144
SgeI	CNNG	5 cut(s)	35, 77, 155, 172, 176
Sse9I	AATT	1 cut(s)	133
SsiI	CCGC	1 cut(s)	173
SspMI	CTAG	1 cut(s)	143
TasI	AATT	1 cut(s)	133
TscAI	CASTG	1 cut(s)	198
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	1 cut(s)	119
TspRI	CASTG	1 cut(s)	198
XapI	RAATTY	1 cut(s)	133
XceI	RCATGY	1 cut(s)	163
XmnI	GAANNNNTTC	1 cut(s)	85
XspI	CTAG	1 cut(s)	143

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.