Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0001152

Physical Location & Seq

Genomic Coordinates Forward (+)

59230373 .. 59234271

Gene Structure 3899 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG366500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1998 bp

ATGACAGTAAAATTTGATCCAGTCTTGATCAAGAGGACAGCAAAAAACTCATGGAAGATTGGCGCGTCATTCCTTTTTCCTTCTCTCATCCTGGTTTACCCTCTATCCCGAGTTCATGGTGGCTTCAATACACATAACTTCATGTTACTATTGGCCAGTACGTGTGCCCTATCTATGAGTTTTTTTCCAGTCATAGCTGAGGCCTTGTATGAACTTGATCTTATGACTTCAGAGTTGGGCCAACTAGCCCTATCCTCTACAATGCTTAATGATGCCGCACTATGGTTCCTCGCTATAGTTAATACGATTGCTTTTAGCAATGGAATTCCGGCATTCCTTTCCACGTTGGGGTTGCTACTCTTCACATTCTACATCTTACACCCACTTATGCTGTTGATTGTTAAGAAAACACTCGAAGGAAAAGCAGTAAAGGAAATATATATAGTTGCGATACTGCTTGGGGTTCTAGTCATGGCCTTTATCACTGACGCCCTAGGCCAAAGGTATAGTTTCGCTCCTTTTATTCTAGGTTTAATCATACCAAATGGACCACCACTTGGTGCAACATTAACGGCCAAGACCGAACTCCTGGTCTCGGAAGTTCTTCTACCAGTGTTCTTTTTTCGTCTTGGCAGCAGCGTAAATGTGTTTATGATTGACGATTGGACTAGATTTGCAAAAATTCAGATTATTATTCTTGCGTTATTTGTTACAAAGATAGTGGGAGTTACAATGACTGGTTTGTGCTGCAAAATTAGCTTGAAGAATAGTTTCGTACTTAGCATGATCATGAGCATGAAGGGTATAGTAGAGTTTATGATCTACAGTAGATGGAAGACCGTAAAGTTTAAAGACGAACAATTTTTCACTCAACTGATCTTGTCTGCACTGGTGATCACAATGATCGTAACACCAATTGTACGATTCTCATACACTCCTCAGAAACGACTCCGAAGATCAACTAAAGATTCACATATCAGAAACATCCAATCACTGCCAAATAACTCGGGAACGTTTCATATTCTTTGTTGTGTCCACAATGAAGAAAGTGCCGGCAGCATCATCACCTTCCTGGAAGCTTCAAATCCAACAGAAGCAAGCCCCATTTGCACTTACATTGTCCACGCAGTTGATTTAATTGGGAGTTCTGCACCACAACTGATGCCTTGCAAGAAGAAAAGGAAACTTAGGCGGTTGGATTCACCTACACATCAAATGATGCGAACCTTTGAGAATTACTCAGAACACTCAAGAGGACCGGTGATAATTCATCCCTATACTATGGTGGCTCCTTATAAATCCATGCACGAGACCATATTTCGTCTAGCTCAGGACAAGCTTGCACCTCTGATTATCATCCCATTCCCTGATAACCACCACCATTCTATTGTTGGCACTGCTCCCTCTAGCCCTATACGCCTAATGATCCTTAATTTACAAGCATTTTCTCTGTGTACAGTTGGAATACTAGTTGACAAGGGCTTGCCTTGTCGGCCAAGTATCTATAACTTCTCCTACATTGTGGCTATATTTTTCATTGGTGGACCAGATGACCGTGAGGCATTAGCATATGCATCACGCATGGCTGACAACCCTGACGTGGGCATCACGGTGTTCAGGATTCTCGTGCGGATCAATAAAATAGAAAGTTTAGAGGAAGAGGAGAGAGAGTTTAAGCTAGACGAGTCATTGTTGGATGAGTTTAAGCTAAGGAACACCGGGAATAATCGGTTGAATTGGCGTGATATTGAGGTGGATGATGGTGTTGAGGCTGTGAAGGTTATTAAGAATTTGCAGGGTGAGTACGACCTAGTTATGGTGGGGCGGCGACATTGGGATGTGTCGTTGAGGGATGAAGAAATGGCAGACTTATTGCACAATCCAGAGCTGGGAGTGATTGGCGACATGCTCGCTTCTTCAGATTTCTGTGGTGGAATGGTGAATGTGTTGGTGATGCAAGAAAGTAGGACCTTGAGTTGTGGAGAGTTTTGTAACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0006810 GO:0006811 GO:0006812 GO:0006885 GO:0008150 GO:0012505 GO:0015672 GO:0042592 GO:0044464 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055067 GO:0055080 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_H_Exchanger

Protein Analysis

665

Amino Acids

74.57

Weight (kDa)

7.59

Isoelectric Point (pI)

41.47

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Na_H_Exchanger	PF00999	25 - 307	7.8e-24	Sodium/hydrogen exchanger, transmembrane
CHX17_C	PF23259	507 - 654	1.4e-12	Plant cation/H(+) antiporter, C-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0001152)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g43690 FvH4_7g25211 FvH4_7g25250 FvH4_7g25290 FvH4_7g25310
malus_domestica	MD01G1158700.v1.1 MD01G1158800.v1.1 MD07G1227200.v1.1 MD07G1227600.v1.1
prunus_persica	Prupe.2G257000_v2.0.a1 Prupe.2G257100_v2.0.a1
pyrus_communis	pycom01g17540
rosa_chinensis	RchiOBHm_Chr1g0371191 RchiOBHm_Chr1g0371201 RchiOBHm_Chr1g0371211
rosa_laevigata	RLG00000026978 RLG00000026979 RLG00000026980 RLG00000026981 RLG00000026983 RLG00000036771
rosa_multiflora	Rmu_co8222838.1_g000001 Rmu_sc0000631.1_g000023 Rmu_sc0001018.1_g000042 Rmu_sc0001018.1_g000044 Rmu_sc0001018.1_g000049 Rmu_sc0001018.1_g000050 Rmu_sc0001018.1_g000051 Rmu_sc0008081.1_g000003
rosa_roxburghii	Rroxscaffold_4G00285900 Rroxscaffold_4G00285910
rosa_rugosa	Rorug01G0361700 Rorug01G0361900 Rorug01G0362000 Rorug01G0362200 Rorug05G0460600
rosa_samantha	Rh1AG372000 Rh1AG372200 Rh1AG372300 Rh1BG335100 Rh1BG335500 Rh1BG335700 Rh1BG335800 Rh1CG348600 Rh1CG349000 Rh1CG349100 Rh1CG349200 Rh1DG366500 Rh1DG366900 Rh1DG367000 Rh5BG537300 Rh5CG560800 Rh5DG548900
rosa_wichuraiana	Rw1G032720 Rw1G032730 Rw1G032740 Rw5G047750 Rw5G047880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1296
AccB7I	CCANNNNNTGG	1 cut(s)	557
AccII	CGCG	1 cut(s)	65
AciI	CCGC	4 cut(s)	276, 1192, 1630, 1825
AclI	AACGTT	1 cut(s)	1013
AclWI	GGATC	3 cut(s)	11, 1420, 1640
AcoI	YGGCCR	3 cut(s)	153, 573, 1493
AcsI	RAATTY	4 cut(s)	11, 324, 681, 1789
AcuI	CTGAAG	2 cut(s)	213, 1902
AcyI	GRCGYC	1 cut(s)	489
AdeI	CACNNNGTG	1 cut(s)	560
AfaI	GTAC	5 cut(s)	160, 777, 921, 1456, 1805
AfiI	CCNNNNNNNGG	8 cut(s)	282, 348, 557, 595, 1600, 1601, 1816, 1889
AflIII	ACRYGT	1 cut(s)	161
AgeI	ACCGGT	1 cut(s)	1258
AgsI	TTSAA	4 cut(s)	127, 763, 1083, 1735
AhlI	ACTAGT	1 cut(s)	1468
AjiI	CACGTC	1 cut(s)	1600
AjnI	CCWGG	3 cut(s)	90, 588, 1071
AluBI	AGCT	8 cut(s)	197, 759, 1079, 1328, 1339, 1678, 1708, 1888
AluI	AGCT	8 cut(s)	197, 759, 1079, 1328, 1339, 1678, 1708, 1888
Alw26I	GTCTC	2 cut(s)	598, 1304
AlwI	GGATC	3 cut(s)	11, 1420, 1640
Ama87I	CYCGRG	2 cut(s)	108, 1006
AoxI	GGCC	7 cut(s)	153, 201, 238, 474, 496, 573, 1493
ApeKI	GCWGC	4 cut(s)	633, 636, 747, 1056
ApoI	RAATTY	4 cut(s)	11, 324, 681, 1789
ArsI	GACNNNNNNTTYG	2 cut(s)	576, 608
AsiGI	ACCGGT	1 cut(s)	1258
Asp700I	GAANNNNTTC	2 cut(s)	603, 770
AspA2I	CCTAGG	1 cut(s)	493
AspLEI	GCGC	1 cut(s)	65
AspS9I	GGNCC	5 cut(s)	238, 548, 1256, 1544, 1968
AsuC2I	CCSGG	1 cut(s)	1720
AsuHPI	GGTGA	7 cut(s)	904, 1057, 1194, 1273, 1811, 1951, 1963
AvaI	CYCGRG	2 cut(s)	108, 1006
AvaII	GGWCC	4 cut(s)	548, 1256, 1544, 1968
AvrII	CCTAGG	1 cut(s)	493
BaeGI	GKGCMC	1 cut(s)	169
BalI	TGGCCA	1 cut(s)	155
BarI	GAAGNNNNNNTAC	2 cut(s)	591, 623
BauI	CACGAG	2 cut(s)	1307, 1625
BbsI	GAAGAC	1 cut(s)	842
BbvCI	CCTCAGC	1 cut(s)	198
BbvI	GCAGC	4 cut(s)	645, 648, 734, 1068
BccI	CCATC	2 cut(s)	825, 1754
BceAI	ACGGC	1 cut(s)	588
BciT130I	CCWGG	3 cut(s)	92, 590, 1073
BclI	TGATCA	3 cut(s)	27, 786, 894
BcnI	CCSGG	1 cut(s)	1720
BcoDI	GTCTC	2 cut(s)	598, 1304
BcuI	ACTAGT	1 cut(s)	1468
BfmI	CTRYAG	2 cut(s)	294, 823
BglI	GCCNNNNNGGC	1 cut(s)	1492
BisI	GCNGC	6 cut(s)	276, 634, 637, 748, 1057, 1826
BlnI	CCTAGG	1 cut(s)	493
BlsI	GCNGC	6 cut(s)	277, 635, 638, 749, 1058, 1827
Bme1390I	CCNGG	4 cut(s)	92, 590, 1073, 1720
Bme18I	GGWCC	4 cut(s)	548, 1256, 1544, 1968
BmeT110I	CYCGRG	2 cut(s)	108, 1006
BmgBI	CACGTC	1 cut(s)	1600
BmgT120I	GGNCC	5 cut(s)	238, 548, 1256, 1544, 1968
BmiI	GGNNCC	2 cut(s)	287, 1290
BmrFI	CCNGG	4 cut(s)	92, 590, 1073, 1720
BmsI	GCATC	7 cut(s)	262, 1068, 1152, 1209, 1583, 1614, 1944
BpiI	GAAGAC	1 cut(s)	842
BplI	GAGNNNNNCTC	2 cut(s)	1223, 1255
Bpu10I	CCTNAGC	3 cut(s)	198, 1329, 1709
BpuEI	CTTGAG	2 cut(s)	1234, 1993
BpuMI	CCSGG	1 cut(s)	1720
BsaAI	YACGTR	1 cut(s)	162
BsaBI	GATNNNNATC	1 cut(s)	1355
BsaHI	GRCGYC	1 cut(s)	489
BsaI	GGTCTC	2 cut(s)	598, 1304
BsaJI	CCNNGG	1 cut(s)	493
BsaWI	WCCGGW	1 cut(s)	1258
BsaXI	ACNNNNNCTCC	2 cut(s)	1655, 1685
Bsc4I	CCNNNNNNNGG	8 cut(s)	282, 348, 557, 595, 1600, 1601, 1816, 1889
Bse118I	RCCGGY	2 cut(s)	1052, 1258
Bse1I	ACTGG	6 cut(s)	20, 156, 188, 611, 742, 894
Bse3DI	GCAATG	1 cut(s)	325
Bse8I	GATNNNNATC	1 cut(s)	1355
BseBI	CCWGG	3 cut(s)	92, 590, 1073
BseDI	CCNNGG	1 cut(s)	493
BseGI	GGATG	8 cut(s)	87, 984, 1270, 1356, 1702, 1762, 1843, 1858
BseJI	GATNNNNATC	1 cut(s)	1355
BseLI	CCNNNNNNNGG	8 cut(s)	282, 348, 557, 595, 1600, 1601, 1816, 1889
BseMI	GCAATG	1 cut(s)	325
BseMII	CTCAG	4 cut(s)	189, 953, 1254, 1343
BseNI	ACTGG	6 cut(s)	20, 156, 188, 611, 742, 894
BseRI	GAGGAG	2 cut(s)	927, 1676
BseSI	GKGCMC	1 cut(s)	169
BseXI	GCAGC	4 cut(s)	645, 648, 734, 1068
BseYI	CCCAGC	1 cut(s)	1888
BsgI	GTGCAG	2 cut(s)	870, 1134
Bsh1236I	CGCG	1 cut(s)	65
BshFI	GGCC	7 cut(s)	155, 203, 240, 476, 498, 575, 1495
BshTI	ACCGGT	1 cut(s)	1258
BsiHKCI	CYCGRG	2 cut(s)	108, 1006
BsiSI	CCGG	4 cut(s)	329, 1053, 1259, 1719
BslI	CCNNNNNNNGG	8 cut(s)	282, 348, 557, 595, 1600, 1601, 1816, 1889
BsmAI	GTCTC	2 cut(s)	598, 1304
BsmI	GAATGC	1 cut(s)	332
BsnI	GGCC	7 cut(s)	155, 203, 240, 476, 498, 575, 1495
Bso31I	GGTCTC	2 cut(s)	598, 1304
BsoBI	CYCGRG	2 cut(s)	108, 1006
Bsp1286I	GDGCHC	1 cut(s)	169
Bsp1407I	TGTACA	1 cut(s)	1454
BspACI	CCGC	4 cut(s)	276, 1192, 1630, 1825
BspANI	GGCC	7 cut(s)	155, 203, 240, 476, 498, 575, 1495
BspCNI	CTCAG	4 cut(s)	190, 952, 1253, 1342
BspFNI	CGCG	1 cut(s)	65
BspHI	TCATGA	1 cut(s)	789
BspLI	GGNNCC	2 cut(s)	287, 1290
BspPI	GGATC	3 cut(s)	11, 1420, 1640
BspTNI	GGTCTC	2 cut(s)	598, 1304
BsrDI	GCAATG	1 cut(s)	325
BsrFI	RCCGGY	2 cut(s)	1052, 1258
BsrGI	TGTACA	1 cut(s)	1454
BsrI	ACTGG	6 cut(s)	20, 156, 188, 611, 742, 894
BssAI	RCCGGY	2 cut(s)	1052, 1258
BssECI	CCNNGG	1 cut(s)	493
BssNI	GRCGYC	1 cut(s)	489
BssSI	CACGAG	2 cut(s)	1307, 1625
BssT1I	CCWWGG	1 cut(s)	493
Bst2BI	CACGAG	2 cut(s)	1307, 1625
Bst2UI	CCWGG	3 cut(s)	92, 590, 1073
Bst4CI	ACNGT	6 cut(s)	7, 827, 841, 1459, 1556, 1612
Bst6I	CTCTTC	2 cut(s)	365, 1653
BstACI	GRCGYC	1 cut(s)	489
BstAUI	TGTACA	1 cut(s)	1454
BstBAI	YACGTR	1 cut(s)	162
BstC8I	GCNNGC	5 cut(s)	1054, 1099, 1341, 1484, 1911
BstDEI	CTNAG	7 cut(s)	198, 779, 939, 1187, 1240, 1329, 1709
BstF5I	GGATG	8 cut(s)	87, 984, 1270, 1356, 1702, 1762, 1843, 1858
BstFNI	CGCG	1 cut(s)	65
BstHHI	GCGC	1 cut(s)	65
BstMAI	GTCTC	2 cut(s)	598, 1304
BstMWI	GCNNNNNNNGC	4 cut(s)	756, 1107, 1416, 1492
BstNI	CCWGG	3 cut(s)	92, 590, 1073
BstNSI	RCATGY	1 cut(s)	1909
BstSCI	CCNGG	4 cut(s)	90, 588, 1071, 1718
BstSFI	CTRYAG	2 cut(s)	294, 823
BstSLI	GKGCMC	1 cut(s)	169
BstUI	CGCG	1 cut(s)	65
BstV1I	GCAGC	4 cut(s)	645, 648, 734, 1068
BstV2I	GAAGAC	1 cut(s)	842
BsuRI	GGCC	7 cut(s)	155, 203, 240, 476, 498, 575, 1495
BtrI	CACGTC	1 cut(s)	1600
BtsCI	GGATG	8 cut(s)	87, 984, 1270, 1356, 1702, 1762, 1843, 1858
BtsI	GCAGTG	2 cut(s)	992, 1395
BtsIMutI	CAGTG	5 cut(s)	483, 618, 887, 992, 1395
Cac8I	GCNNGC	5 cut(s)	1054, 1099, 1341, 1484, 1911
CciI	TCATGA	1 cut(s)	789
CfoI	GCGC	1 cut(s)	65
Cfr10I	RCCGGY	2 cut(s)	1052, 1258
Cfr13I	GGNCC	5 cut(s)	238, 548, 1256, 1544, 1968
CseI	GACGC	2 cut(s)	54, 497
Csp6I	GTAC	5 cut(s)	159, 776, 920, 1455, 1804
CspAI	ACCGGT	1 cut(s)	1258
CspCI	CAANNNNNGTGG	2 cut(s)	702, 737
CviQI	GTAC	5 cut(s)	159, 776, 920, 1455, 1804
DdeI	CTNAG	7 cut(s)	198, 779, 939, 1187, 1240, 1329, 1709
DraI	TTTAAA	1 cut(s)	850
DraIII	CACNNNGTG	1 cut(s)	560
EaeI	YGGCCR	3 cut(s)	153, 573, 1493
Eam1104I	CTCTTC	2 cut(s)	365, 1653
EarI	CTCTTC	2 cut(s)	365, 1653
Eco130I	CCWWGG	1 cut(s)	493
Eco147I	AGGCCT	1 cut(s)	203
Eco31I	GGTCTC	2 cut(s)	598, 1304
Eco47I	GGWCC	4 cut(s)	548, 1256, 1544, 1968
Eco57I	CTGAAG	2 cut(s)	213, 1902
Eco88I	CYCGRG	2 cut(s)	108, 1006
EcoO109I	RGGNCCY	1 cut(s)	1968
EcoRI	GAATTC	1 cut(s)	324
EcoRII	CCWGG	3 cut(s)	90, 588, 1071
EcoT14I	CCWWGG	1 cut(s)	493
EcoT22I	ATGCAT	1 cut(s)	1576
ErhI	CCWWGG	1 cut(s)	493
FauNDI	CATATG	1 cut(s)	1570
FbaI	TGATCA	3 cut(s)	27, 786, 894
Fnu4HI	GCNGC	6 cut(s)	276, 634, 637, 748, 1057, 1826
FokI	GGATG	8 cut(s)	74, 971, 1257, 1343, 1709, 1769, 1850, 1865
Fsp4HI	GCNGC	6 cut(s)	276, 634, 637, 748, 1057, 1826
GlaI	GCGC	1 cut(s)	64
GluI	GCNGC	6 cut(s)	276, 634, 637, 748, 1057, 1826
GsaI	CCCAGC	1 cut(s)	1892
HaeIII	GGCC	7 cut(s)	155, 203, 240, 476, 498, 575, 1495
HapII	CCGG	4 cut(s)	329, 1053, 1259, 1719
HgaI	GACGC	2 cut(s)	54, 497
HhaI	GCGC	1 cut(s)	65
Hin1I	GRCGYC	1 cut(s)	489
Hin6I	GCGC	1 cut(s)	63
HinP1I	GCGC	1 cut(s)	63
HincII	GTYRAC	1 cut(s)	1474
HindII	GTYRAC	1 cut(s)	1474
HindIII	AAGCTT	2 cut(s)	1077, 1337
HinfI	GANTC	6 cut(s)	924, 948, 968, 1199, 1621, 1685
HpaII	CCGG	4 cut(s)	329, 1053, 1259, 1719
HphI	GGTGA	7 cut(s)	904, 1057, 1194, 1273, 1811, 1951, 1963
Hpy166II	GTNNAC	6 cut(s)	97, 1036, 1123, 1455, 1474, 1544
Hpy188I	TCNGA	9 cut(s)	232, 598, 687, 942, 953, 980, 1243, 1350, 1921
Hpy188III	TCNNGA	9 cut(s)	25, 31, 108, 790, 1008, 1251, 1331, 1618, 1883
Hpy8I	GTNNAC	6 cut(s)	97, 1036, 1123, 1455, 1474, 1544
HpyAV	CCTTC	5 cut(s)	90, 410, 793, 1078, 1771
HpyCH4III	ACNGT	6 cut(s)	7, 827, 841, 1459, 1556, 1612
HpyCH4IV	ACGT	4 cut(s)	161, 344, 1013, 1599
HpyF10VI	GCNNNNNNNGC	4 cut(s)	756, 1107, 1416, 1492
HpyF3I	CTNAG	7 cut(s)	198, 779, 939, 1187, 1240, 1329, 1709
HpySE526I	ACGT	4 cut(s)	161, 344, 1013, 1599
Hsp92I	GRCGYC	1 cut(s)	489
HspAI	GCGC	1 cut(s)	63
KroI	GCCGGC	1 cut(s)	1052
KroNI	GCCGGC	1 cut(s)	1054
Ksp22I	TGATCA	3 cut(s)	27, 786, 894
LmnI	GCTCC	3 cut(s)	520, 1294, 1405
Lsp1109I	GCAGC	4 cut(s)	645, 648, 734, 1068
LweI	GCATC	7 cut(s)	262, 1068, 1152, 1209, 1583, 1614, 1944
MaeII	ACGT	4 cut(s)	161, 344, 1013, 1599
MaeIII	GTNAC	5 cut(s)	144, 709, 727, 907, 1991
MfeI	CAATTG	1 cut(s)	915
MhlI	GDGCHC	1 cut(s)	169
MlsI	TGGCCA	1 cut(s)	155
MluNI	TGGCCA	1 cut(s)	155
MlyI	GAGTC	2 cut(s)	942, 1694
MmeI	TCCRAC	4 cut(s)	1112, 1176, 1441, 1674
Mox20I	TGGCCA	1 cut(s)	155
Mph1103I	ATGCAT	1 cut(s)	1576
MroNI	GCCGGC	1 cut(s)	1052
MroXI	GAANNNNTTC	2 cut(s)	603, 770
MscI	TGGCCA	1 cut(s)	155
MslI	CAYNNNNRTG	4 cut(s)	788, 794, 1610, 1836
Msp20I	TGGCCA	1 cut(s)	155
MspI	CCGG	4 cut(s)	329, 1053, 1259, 1719
MspR9I	CCNGG	4 cut(s)	92, 590, 1073, 1720
MunI	CAATTG	1 cut(s)	915
Mva1269I	GAATGC	1 cut(s)	332
MvaI	CCWGG	3 cut(s)	92, 590, 1073
MvnI	CGCG	1 cut(s)	65
MwoI	GCNNNNNNNGC	4 cut(s)	756, 1107, 1416, 1492
NaeI	GCCGGC	1 cut(s)	1054
NciI	CCSGG	1 cut(s)	1720
NdeI	CATATG	1 cut(s)	1570
NgoMIV	GCCGGC	1 cut(s)	1052
NlaIV	GGNNCC	2 cut(s)	287, 1290
NsiI	ATGCAT	1 cut(s)	1576
NspI	RCATGY	1 cut(s)	1909
PagI	TCATGA	1 cut(s)	789
PceI	AGGCCT	1 cut(s)	203
PctI	GAATGC	1 cut(s)	332
PdiI	GCCGGC	1 cut(s)	1054
PdmI	GAANNNNTTC	2 cut(s)	603, 770
PfeI	GAWTC	4 cut(s)	924, 968, 1199, 1621
PflMI	CCANNNNNTGG	1 cut(s)	557
PfoI	TCCNGGA	1 cut(s)	1071
PinAI	ACCGGT	1 cut(s)	1258
PkrI	GCNGC	6 cut(s)	277, 635, 638, 749, 1058, 1827
PleI	GAGTC	2 cut(s)	942, 1693
PpsI	GAGTC	2 cut(s)	942, 1693
Ppu21I	YACGTR	1 cut(s)	162
PpuMI	RGGWCCY	1 cut(s)	1968
PsiI	TTATAA	1 cut(s)	1296
Psp1406I	AACGTT	1 cut(s)	1013
Psp5II	RGGWCCY	1 cut(s)	1968
Psp6I	CCWGG	3 cut(s)	90, 588, 1071
PspFI	CCCAGC	1 cut(s)	1888
PspGI	CCWGG	3 cut(s)	90, 588, 1071
PspN4I	GGNNCC	2 cut(s)	287, 1290
PspPI	GGNCC	5 cut(s)	238, 548, 1256, 1544, 1968
PspPPI	RGGWCCY	1 cut(s)	1968
RsaI	GTAC	5 cut(s)	160, 777, 921, 1456, 1805
RsaNI	GTAC	5 cut(s)	159, 776, 920, 1455, 1804
RseI	CAYNNNNRTG	4 cut(s)	788, 794, 1610, 1836
SatI	GCNGC	6 cut(s)	276, 634, 637, 748, 1057, 1826
Sau96I	GGNCC	5 cut(s)	238, 548, 1256, 1544, 1968
SchI	GAGTC	2 cut(s)	942, 1694
ScrFI	CCNGG	4 cut(s)	92, 590, 1073, 1720
SduI	GDGCHC	1 cut(s)	169
SfaNI	GCATC	7 cut(s)	262, 1068, 1152, 1209, 1583, 1614, 1944
SfcI	CTRYAG	2 cut(s)	294, 823
SinI	GGWCC	4 cut(s)	548, 1256, 1544, 1968
SmiMI	CAYNNNNRTG	4 cut(s)	788, 794, 1610, 1836
SmlI	CTYRAG	2 cut(s)	1249, 1972
SmoI	CTYRAG	2 cut(s)	1249, 1972
SpeI	ACTAGT	1 cut(s)	1468
SseBI	AGGCCT	1 cut(s)	203
SsiI	CCGC	4 cut(s)	276, 1192, 1630, 1825
StuI	AGGCCT	1 cut(s)	203
StyD4I	CCNGG	4 cut(s)	90, 588, 1071, 1718
StyI	CCWWGG	1 cut(s)	493
TaaI	ACNGT	6 cut(s)	7, 827, 841, 1459, 1556, 1612
TaiI	ACGT	4 cut(s)	164, 347, 1016, 1602
TaqI	TCGA	1 cut(s)	414
TaqII	GACCGA	1 cut(s)	596
TatI	WGTACW	1 cut(s)	1454
TauI	GCSGC	2 cut(s)	278, 1828
TfiI	GAWTC	4 cut(s)	924, 968, 1199, 1621
TscAI	CASTG	5 cut(s)	490, 618, 894, 999, 1402
TseI	GCWGC	4 cut(s)	633, 636, 747, 1056
TspDTI	ATGAA	9 cut(s)	104, 130, 225, 812, 1007, 1056, 1259, 1525, 1869
TspRI	CASTG	5 cut(s)	490, 618, 894, 999, 1402
Van91I	CCANNNNNTGG	1 cut(s)	557
VpaK11BI	GGWCC	4 cut(s)	548, 1256, 1544, 1968
XapI	RAATTY	4 cut(s)	11, 324, 681, 1789
XceI	RCATGY	1 cut(s)	1909
XcmI	CCANNNNNNNNNTGG	1 cut(s)	1388
XmaJI	CCTAGG	1 cut(s)	493
XmnI	GAANNNNTTC	2 cut(s)	603, 770
Zsp2I	ATGCAT	1 cut(s)	1576

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.