Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8222838.1

Orthogroup ID

OG0001152

Physical Location & Seq

Genomic Coordinates Forward (+)

53 .. 661

Gene Structure 609 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8222838.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 609 bp

atgcacgagaccatttttcgtctagctcgggaaaagctcgctcctctgattatcatctcattccctgataaccaacaccagtctattgttggcactgctcccactagccccatacgccaattgaaccttaatttacaacaattttctcagtgtacaattggaatactagttgacaaaggcttgccttgtcgaccaagtgtctccaacttctcttacattgtggccgtatttttcattggtggaccagatgaccgtgagacattagcatatgcatcacgcatggcagacaaccctgacgtgggcatcacagtgttcaggattctcgtgcgtatcaagaagatagacagttctgaggaagaggagagagagtttaagctagacgagtcactgttggatgagtttaagctaagaaacaccgggaatgataggttgaattggcgtgatattgaggtggatgatggtgttgagactgttgaggctgtgaaggctattaaaaattttcagggtgagtacgacccagtgatggtggggcggcgacatttggatgtgtcgttgagggatgaagaaatggcagacttattgcacaatccagagctgggagtgacatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005623 GO:0006810 GO:0006811 GO:0006812 GO:0006885 GO:0008150 GO:0012505 GO:0015672 GO:0042592 GO:0044464 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055067 GO:0055080 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Na_H_Exchanger

Protein Analysis

202

Amino Acids

22.93

Weight (kDa)

4.84

Isoelectric Point (pI)

39.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0001152)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g43690 FvH4_7g25211 FvH4_7g25250 FvH4_7g25290 FvH4_7g25310
malus_domestica	MD01G1158700.v1.1 MD01G1158800.v1.1 MD07G1227200.v1.1 MD07G1227600.v1.1
prunus_persica	Prupe.2G257000_v2.0.a1 Prupe.2G257100_v2.0.a1
pyrus_communis	pycom01g17540
rosa_chinensis	RchiOBHm_Chr1g0371191 RchiOBHm_Chr1g0371201 RchiOBHm_Chr1g0371211
rosa_laevigata	RLG00000026978 RLG00000026979 RLG00000026980 RLG00000026981 RLG00000026983 RLG00000036771
rosa_multiflora	Rmu_co8222838.1_g000001 Rmu_sc0000631.1_g000023 Rmu_sc0001018.1_g000042 Rmu_sc0001018.1_g000044 Rmu_sc0001018.1_g000049 Rmu_sc0001018.1_g000050 Rmu_sc0001018.1_g000051 Rmu_sc0008081.1_g000003
rosa_roxburghii	Rroxscaffold_4G00285900 Rroxscaffold_4G00285910
rosa_rugosa	Rorug01G0361700 Rorug01G0361900 Rorug01G0362000 Rorug01G0362200 Rorug05G0460600
rosa_samantha	Rh1AG372000 Rh1AG372200 Rh1AG372300 Rh1BG335100 Rh1BG335500 Rh1BG335700 Rh1BG335800 Rh1CG348600 Rh1CG349000 Rh1CG349100 Rh1CG349200 Rh1DG366500 Rh1DG366900 Rh1DG367000 Rh5BG537300 Rh5CG560800 Rh5DG548900
rosa_wichuraiana	Rw1G032720 Rw1G032730 Rw1G032740 Rw5G047750 Rw5G047880

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	190
AciI	CCGC	1 cut(s)	532
AcoI	YGGCCR	1 cut(s)	222
AcsI	RAATTY	1 cut(s)	496
AfaI	GTAC	2 cut(s)	154, 512
AfiI	CCNNNNNNNGG	4 cut(s)	298, 299, 523, 596
AgsI	TTSAA	2 cut(s)	124, 433
AhdI	GACNNNNNGTC	1 cut(s)	197
AhlI	ACTAGT	1 cut(s)	166
AjiI	CACGTC	1 cut(s)	298
AluBI	AGCT	5 cut(s)	26, 37, 376, 406, 595
AluI	AGCT	5 cut(s)	26, 37, 376, 406, 595
Alw26I	GTCTC	4 cut(s)	2, 205, 251, 461
Ama87I	CYCGRG	1 cut(s)	27
AoxI	GGCC	1 cut(s)	222
ApoI	RAATTY	1 cut(s)	496
AspS9I	GGNCC	1 cut(s)	242
AsuC2I	CCSGG	1 cut(s)	418
AsuHPI	GGTGA	1 cut(s)	518
AvaI	CYCGRG	1 cut(s)	27
AvaII	GGWCC	1 cut(s)	242
BauI	CACGAG	2 cut(s)	5, 323
BccI	CCATC	2 cut(s)	452, 517
BceAI	ACGGC	1 cut(s)	209
BcnI	CCSGG	1 cut(s)	418
BcoDI	GTCTC	4 cut(s)	2, 205, 251, 461
BcuI	ACTAGT	1 cut(s)	166
BfaI	CTAG	4 cut(s)	23, 105, 167, 377
BisI	GCNGC	1 cut(s)	533
BlsI	GCNGC	1 cut(s)	534
Bme1390I	CCNGG	1 cut(s)	418
Bme18I	GGWCC	1 cut(s)	242
BmeRI	GACNNNNNGTC	1 cut(s)	197
BmeT110I	CYCGRG	1 cut(s)	27
BmgBI	CACGTC	1 cut(s)	298
BmgT120I	GGNCC	1 cut(s)	242
BmrFI	CCNGG	1 cut(s)	418
BmrI	ACTGGG	1 cut(s)	512
BmsI	GCATC	2 cut(s)	281, 312
BmuI	ACTGGG	1 cut(s)	512
BpuMI	CCSGG	1 cut(s)	418
BsaBI	GATNNNNATC	1 cut(s)	53
BsaI	GGTCTC	1 cut(s)	2
BsaXI	ACNNNNNCTCC	2 cut(s)	353, 383
Bsc4I	CCNNNNNNNGG	4 cut(s)	298, 299, 523, 596
Bse1I	ACTGG	2 cut(s)	79, 518
Bse8I	GATNNNNATC	1 cut(s)	53
BseGI	GGATG	4 cut(s)	400, 460, 550, 565
BseJI	GATNNNNATC	1 cut(s)	53
BseLI	CCNNNNNNNGG	4 cut(s)	298, 299, 523, 596
BseMII	CTCAG	2 cut(s)	161, 342
BseNI	ACTGG	2 cut(s)	79, 518
BseRI	GAGGAG	2 cut(s)	33, 374
BseYI	CCCAGC	1 cut(s)	595
BshFI	GGCC	1 cut(s)	224
BsiHKCI	CYCGRG	1 cut(s)	27
BsiSI	CCGG	1 cut(s)	417
BslI	CCNNNNNNNGG	4 cut(s)	298, 299, 523, 596
BsmAI	GTCTC	4 cut(s)	2, 205, 251, 461
BsnI	GGCC	1 cut(s)	224
Bso31I	GGTCTC	1 cut(s)	2
BsoBI	CYCGRG	1 cut(s)	27
Bsp1407I	TGTACA	1 cut(s)	152
BspACI	CCGC	1 cut(s)	532
BspANI	GGCC	1 cut(s)	224
BspCNI	CTCAG	2 cut(s)	160, 343
BspTNI	GGTCTC	1 cut(s)	2
BsrGI	TGTACA	1 cut(s)	152
BsrI	ACTGG	2 cut(s)	79, 518
BssSI	CACGAG	2 cut(s)	5, 323
Bst2BI	CACGAG	2 cut(s)	5, 323
Bst4CI	ACNGT	5 cut(s)	254, 310, 347, 390, 472
Bst6I	CTCTTC	1 cut(s)	351
BstAUI	TGTACA	1 cut(s)	152
BstC8I	GCNNGC	2 cut(s)	39, 182
BstDEI	CTNAG	3 cut(s)	147, 351, 407
BstF5I	GGATG	4 cut(s)	400, 460, 550, 565
BstMAI	GTCTC	4 cut(s)	2, 205, 251, 461
BstMWI	GCNNNNNNNGC	2 cut(s)	114, 485
BstSCI	CCNGG	1 cut(s)	416
BsuRI	GGCC	1 cut(s)	224
BtrI	CACGTC	1 cut(s)	298
BtsCI	GGATG	4 cut(s)	400, 460, 550, 565
BtsI	GCAGTG	1 cut(s)	93
BtsIMutI	CAGTG	5 cut(s)	93, 155, 315, 386, 525
Cac8I	GCNNGC	2 cut(s)	39, 182
Cfr13I	GGNCC	1 cut(s)	242
Csp6I	GTAC	2 cut(s)	153, 511
CviAII	CATG	2 cut(s)	280, 606
CviQI	GTAC	2 cut(s)	153, 511
DdeI	CTNAG	3 cut(s)	147, 351, 407
DriI	GACNNNNNGTC	1 cut(s)	197
EaeI	YGGCCR	1 cut(s)	222
Eam1104I	CTCTTC	1 cut(s)	351
Eam1105I	GACNNNNNGTC	1 cut(s)	197
EarI	CTCTTC	1 cut(s)	351
Eco31I	GGTCTC	1 cut(s)	2
Eco47I	GGWCC	1 cut(s)	242
Eco88I	CYCGRG	1 cut(s)	27
EcoT22I	ATGCAT	1 cut(s)	274
FaeI	CATG	2 cut(s)	283, 609
FaiI	YATR	5 cut(s)	113, 268, 270, 281, 607
FatI	CATG	2 cut(s)	279, 605
FauNDI	CATATG	1 cut(s)	268
FblI	GTMKAC	1 cut(s)	190
Fnu4HI	GCNGC	1 cut(s)	533
FokI	GGATG	4 cut(s)	407, 467, 557, 572
Fsp4HI	GCNGC	1 cut(s)	533
FspBI	CTAG	4 cut(s)	23, 105, 167, 377
GluI	GCNGC	1 cut(s)	533
GsaI	CCCAGC	1 cut(s)	599
HaeIII	GGCC	1 cut(s)	224
HapII	CCGG	1 cut(s)	417
Hin1II	CATG	2 cut(s)	283, 609
HincII	GTYRAC	2 cut(s)	172, 191
HindII	GTYRAC	2 cut(s)	172, 191
HinfI	GANTC	2 cut(s)	319, 383
HpaII	CCGG	1 cut(s)	417
HphI	GGTGA	1 cut(s)	518
Hpy166II	GTNNAC	4 cut(s)	153, 172, 191, 242
Hpy188I	TCNGA	2 cut(s)	48, 352
Hpy188III	TCNNGA	4 cut(s)	29, 316, 334, 590
Hpy8I	GTNNAC	4 cut(s)	153, 172, 191, 242
HpyAV	CCTTC	1 cut(s)	478
HpyCH4III	ACNGT	5 cut(s)	254, 310, 347, 390, 472
HpyCH4IV	ACGT	1 cut(s)	297
HpyCH4V	TGCA	3 cut(s)	4, 272, 583
HpyF10VI	GCNNNNNNNGC	2 cut(s)	114, 485
HpyF3I	CTNAG	3 cut(s)	147, 351, 407
HpySE526I	ACGT	1 cut(s)	297
Hsp92II	CATG	2 cut(s)	283, 609
LmnI	GCTCC	2 cut(s)	46, 103
LweI	GCATC	2 cut(s)	281, 312
MaeI	CTAG	4 cut(s)	23, 105, 167, 377
MaeII	ACGT	1 cut(s)	297
MaeIII	GTNAC	2 cut(s)	384, 601
MboII	GAAGA	3 cut(s)	349, 368, 575
MfeI	CAATTG	2 cut(s)	119, 156
MluCI	AATT	6 cut(s)	119, 130, 140, 156, 433, 496
MlyI	GAGTC	1 cut(s)	392
MmeI	TCCRAC	2 cut(s)	228, 372
MnlI	CCTC	6 cut(s)	54, 346, 352, 442, 469, 549
Mph1103I	ATGCAT	1 cut(s)	274
MseI	TTAA	4 cut(s)	129, 372, 402, 492
MslI	CAYNNNNRTG	2 cut(s)	308, 543
MspI	CCGG	1 cut(s)	417
MspR9I	CCNGG	1 cut(s)	418
MunI	CAATTG	2 cut(s)	119, 156
MwoI	GCNNNNNNNGC	2 cut(s)	114, 485
NciI	CCSGG	1 cut(s)	418
NdeI	CATATG	1 cut(s)	268
NlaIII	CATG	2 cut(s)	283, 609
NmuCI	GTSAC	2 cut(s)	384, 601
NsiI	ATGCAT	1 cut(s)	274
PfeI	GAWTC	1 cut(s)	319
PkrI	GCNGC	1 cut(s)	534
PleI	GAGTC	1 cut(s)	391
PpsI	GAGTC	1 cut(s)	391
PspFI	CCCAGC	1 cut(s)	595
PspPI	GGNCC	1 cut(s)	242
RsaI	GTAC	2 cut(s)	154, 512
RsaNI	GTAC	2 cut(s)	153, 511
RseI	CAYNNNNRTG	2 cut(s)	308, 543
SalI	GTCGAC	1 cut(s)	189
SaqAI	TTAA	4 cut(s)	129, 372, 402, 492
SatI	GCNGC	1 cut(s)	533
Sau96I	GGNCC	1 cut(s)	242
SchI	GAGTC	1 cut(s)	392
ScrFI	CCNGG	1 cut(s)	418
SetI	ASST	9 cut(s)	28, 39, 129, 300, 378, 408, 431, 453, 597
SfaNI	GCATC	2 cut(s)	281, 312
SinI	GGWCC	1 cut(s)	242
SmiMI	CAYNNNNRTG	2 cut(s)	308, 543
SpeI	ACTAGT	1 cut(s)	166
Sse9I	AATT	6 cut(s)	119, 130, 140, 156, 433, 496
SsiI	CCGC	1 cut(s)	532
SspMI	CTAG	4 cut(s)	23, 105, 167, 377
StyD4I	CCNGG	1 cut(s)	416
TaaI	ACNGT	5 cut(s)	254, 310, 347, 390, 472
TaiI	ACGT	1 cut(s)	300
TaqI	TCGA	1 cut(s)	190
TasI	AATT	6 cut(s)	119, 130, 140, 156, 433, 496
TatI	WGTACW	1 cut(s)	152
TauI	GCSGC	1 cut(s)	535
TfiI	GAWTC	1 cut(s)	319
Tru1I	TTAA	4 cut(s)	129, 372, 402, 492
Tru9I	TTAA	4 cut(s)	129, 372, 402, 492
TscAI	CASTG	5 cut(s)	100, 155, 315, 393, 525
TseFI	GTSAC	2 cut(s)	384, 601
Tsp45I	GTSAC	2 cut(s)	384, 601
TspDTI	ATGAA	2 cut(s)	223, 576
TspRI	CASTG	5 cut(s)	100, 155, 315, 393, 525
VpaK11BI	GGWCC	1 cut(s)	242
XapI	RAATTY	1 cut(s)	496
XcmI	CCANNNNNNNNNTGG	1 cut(s)	86
XmiI	GTMKAC	1 cut(s)	190
XspI	CTAG	4 cut(s)	23, 105, 167, 377
Zsp2I	ATGCAT	1 cut(s)	274

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.