Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0002423

Physical Location & Seq

Genomic Coordinates Reverse (-)

7596877 .. 7597769

Gene Structure 893 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g08020.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

ATGTCCTCCTCCTCCTTCACTCTCCCTGATGACGACTCCGTCCCCACCGTCGGGTCAACCCGCCCGTTCGACGACGATGACTACCTCAGCTACGAGCACGACTCCGTAGTAGTAGACGACGTCTTCGCTACGCCTCAGCCGCTCATTGAGCCTCCATCTCCGCCGTCGATCTTCGCTGCCGGATCGAACGATCCGATTCAGCCGGAGATGCTGCCAGAGGAGGGCGCCGCTCTCAGGGAATGGAGAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0006897 GO:0006898 GO:0008150 GO:0009504 GO:0009507 GO:0009524 GO:0009526 GO:0009536 GO:0009941 GO:0012506 GO:0016020 GO:0016192 GO:0030117 GO:0030118 GO:0030120 GO:0030125 GO:0030135 GO:0030136 GO:0030276 GO:0030659 GO:0030662 GO:0030665 GO:0031090 GO:0031410 GO:0031967 GO:0031975 GO:0031982 GO:0032050 GO:0032991 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048475 GO:0051179 GO:0051234 GO:0071944 GO:0072583 GO:0097708 GO:0098588 GO:0098657 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04142 ko04144 ko04721 ko04961 ko05016 ko05100 map04142 map04144 map04721 map04961 map05016 map05100

Pfam Domains

Protein Families

Clathrin_lg_ch

Protein Analysis

84

Amino Acids

9.04

Weight (kDa)

4.05

Isoelectric Point (pI)

76.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002423)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40060
fragaria_vesca	FvH4_4g08020 FvH4_7g24260
malus_domestica	MD00G1024200.v1.1 MD00G1047100.v1.1 MD00G1047900.v1.1 MD00G1048400.v1.1 MD00G1062700.v1.1 MD01G1132200.v1.1 MD01G1150700.v1.1 MD01G1152000.v1.1 MD05G1333900.v1.1 MD07G1216800.v1.1 MD07G1219900.v1.1
prunus_persica	Prupe.2G248500_v2.0.a1
pyrus_communis	pycom01g16830 pycom01g16850 pycom01g16880 pycom07g19900 pycom11g19450
rosa_chinensis	RchiOBHm_Chr1g0369851
rosa_laevigata	RLG00000027088 RLG00000027098
rosa_multiflora	Rmu_co8474619.1_g000001 Rmu_sc0008140.1_g000010
rosa_roxburghii	Rroxscaffold_3G00232620 Rroxscaffold_4G00286940 Rroxscaffold_4G00287110 Rroxscaffold_4G00322920
rosa_rugosa	Rorug01G0352700
rosa_samantha	Rh1AG194100 Rh1AG361200 Rh1BG178100 Rh1BG324900 Rh1CG179000 Rh1CG338100 Rh1DG087000 Rh1DG207800 Rh1DG355300
rosa_wichuraiana	Rw0G015470 Rw1G031810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	38
AatII	GACGTC	1 cut(s)	123
AccB1I	GGYRCC	1 cut(s)	224
AccBSI	CCGCTC	2 cut(s)	142, 230
AccI	GTMKAC	1 cut(s)	114
AciI	CCGC	4 cut(s)	61, 140, 161, 228
AclWI	GGATC	2 cut(s)	185, 190
AcyI	GRCGYC	2 cut(s)	120, 225
AfiI	CCNNNNNNNGG	4 cut(s)	50, 51, 221, 234
AluBI	AGCT	1 cut(s)	90
AluI	AGCT	1 cut(s)	90
Alw21I	GWGCWC	1 cut(s)	99
AlwI	GGATC	2 cut(s)	185, 190
ApeKI	GCWGC	2 cut(s)	176, 211
ArsI	GACNNNNNNTTYG	2 cut(s)	107, 139
AspLEI	GCGC	1 cut(s)	227
BanI	GGYRCC	1 cut(s)	224
BbsI	GAAGAC	1 cut(s)	115
Bbv12I	GWGCWC	1 cut(s)	99
BbvCI	CCTCAGC	2 cut(s)	86, 135
BbvI	GCAGC	2 cut(s)	163, 198
BccI	CCATC	1 cut(s)	163
BceAI	ACGGC	1 cut(s)	148
BfoI	RGCGCY	1 cut(s)	228
BisI	GCNGC	4 cut(s)	140, 177, 212, 228
BlsI	GCNGC	4 cut(s)	141, 178, 213, 229
BmiI	GGNNCC	1 cut(s)	226
BmsI	GCATC	1 cut(s)	198
BpiI	GAAGAC	1 cut(s)	115
BplI	GAGNNNNNCTC	2 cut(s)	86, 118
Bpu10I	CCTNAGC	2 cut(s)	86, 135
BsaHI	GRCGYC	2 cut(s)	120, 225
Bsc4I	CCNNNNNNNGG	4 cut(s)	50, 51, 221, 234
BseLI	CCNNNNNNNGG	4 cut(s)	50, 51, 221, 234
BseMII	CTCAG	3 cut(s)	100, 149, 247
BseRI	GAGGAG	1 cut(s)	233
BseXI	GCAGC	2 cut(s)	163, 198
BshNI	GGYRCC	1 cut(s)	224
BsiHKAI	GWGCWC	1 cut(s)	99
BsiSI	CCGG	2 cut(s)	180, 203
BslFI	GGGAC	1 cut(s)	26
BslI	CCNNNNNNNGG	4 cut(s)	50, 51, 221, 234
BsmFI	GGGAC	1 cut(s)	26
Bsp1286I	GDGCHC	1 cut(s)	99
Bsp143I	GATC	3 cut(s)	168, 182, 190
BspACI	CCGC	4 cut(s)	61, 140, 161, 228
BspCNI	CTCAG	3 cut(s)	99, 148, 246
BspLI	GGNNCC	1 cut(s)	226
BspPI	GGATC	2 cut(s)	185, 190
BspT107I	GGYRCC	1 cut(s)	224
BsrBI	CCGCTC	2 cut(s)	142, 230
BssMI	GATC	3 cut(s)	168, 182, 190
BssNI	GRCGYC	2 cut(s)	120, 225
Bst4CI	ACNGT	1 cut(s)	49
BstACI	GRCGYC	2 cut(s)	120, 225
BstDEI	CTNAG	3 cut(s)	86, 135, 233
BstH2I	RGCGCY	1 cut(s)	228
BstHHI	GCGC	1 cut(s)	227
BstKTI	GATC	3 cut(s)	171, 185, 193
BstMBI	GATC	3 cut(s)	168, 182, 190
BstMWI	GCNNNNNNNGC	3 cut(s)	139, 148, 208
BstV1I	GCAGC	2 cut(s)	163, 198
BstV2I	GAAGAC	1 cut(s)	115
CfoI	GCGC	1 cut(s)	227
CviJI	RGCY	4 cut(s)	90, 139, 151, 202
CviKI_1	RGCY	4 cut(s)	90, 139, 151, 202
DdeI	CTNAG	3 cut(s)	86, 135, 233
DinI	GGCGCC	1 cut(s)	226
DpnI	GATC	3 cut(s)	170, 184, 192
DpnII	GATC	3 cut(s)	168, 182, 190
DrdI	GACNNNNNNGTC	1 cut(s)	38
DseDI	GACNNNNNNGTC	1 cut(s)	38
EciI	GGCGGA	1 cut(s)	150
EgeI	GGCGCC	1 cut(s)	226
EheI	GGCGCC	1 cut(s)	226
FaqI	GGGAC	1 cut(s)	26
FauI	CCCGC	1 cut(s)	68
FblI	GTMKAC	1 cut(s)	114
Fnu4HI	GCNGC	4 cut(s)	140, 177, 212, 228
Fsp4HI	GCNGC	4 cut(s)	140, 177, 212, 228
GlaI	GCGC	1 cut(s)	226
GluI	GCNGC	4 cut(s)	140, 177, 212, 228
HaeII	RGCGCY	1 cut(s)	228
HapII	CCGG	2 cut(s)	180, 203
HhaI	GCGC	1 cut(s)	227
Hin1I	GRCGYC	2 cut(s)	120, 225
Hin6I	GCGC	1 cut(s)	225
HinP1I	GCGC	1 cut(s)	225
HincII	GTYRAC	1 cut(s)	57
HindII	GTYRAC	1 cut(s)	57
HinfI	GANTC	3 cut(s)	35, 101, 196
HpaII	CCGG	2 cut(s)	180, 203
Hpy166II	GTNNAC	2 cut(s)	57, 115
Hpy188I	TCNGA	1 cut(s)	195
Hpy8I	GTNNAC	2 cut(s)	57, 115
Hpy99I	CGWCG	5 cut(s)	53, 74, 77, 122, 169
HpyAV	CCTTC	1 cut(s)	25
HpyCH4III	ACNGT	1 cut(s)	49
HpyCH4IV	ACGT	1 cut(s)	120
HpyF10VI	GCNNNNNNNGC	3 cut(s)	139, 148, 208
HpyF3I	CTNAG	3 cut(s)	86, 135, 233
HpySE526I	ACGT	1 cut(s)	120
Hsp92I	GRCGYC	2 cut(s)	120, 225
HspAI	GCGC	1 cut(s)	225
KasI	GGCGCC	1 cut(s)	224
Kzo9I	GATC	3 cut(s)	168, 182, 190
LpnPI	CCDG	5 cut(s)	39, 193, 216, 220, 228
Lsp1109I	GCAGC	2 cut(s)	163, 198
LweI	GCATC	1 cut(s)	198
MaeII	ACGT	1 cut(s)	120
MalI	GATC	3 cut(s)	170, 184, 192
MbiI	CCGCTC	2 cut(s)	142, 230
MboI	GATC	3 cut(s)	168, 182, 190
MboII	GAAGA	2 cut(s)	115, 163
MhlI	GDGCHC	1 cut(s)	99
Mly113I	GGCGCC	1 cut(s)	225
MlyI	GAGTC	2 cut(s)	29, 95
MnlI	CCTC	8 cut(s)	16, 19, 22, 95, 144, 162, 211, 214
MspI	CCGG	2 cut(s)	180, 203
MwoI	GCNNNNNNNGC	3 cut(s)	139, 148, 208
NarI	GGCGCC	1 cut(s)	225
NdeII	GATC	3 cut(s)	168, 182, 190
NlaIV	GGNNCC	1 cut(s)	226
PcsI	WCGNNNNNNNCGW	1 cut(s)	191
PfeI	GAWTC	1 cut(s)	196
PflFI	GACNNNGTC	2 cut(s)	38, 119
PkrI	GCNGC	4 cut(s)	141, 178, 213, 229
PleI	GAGTC	2 cut(s)	29, 95
PluTI	GGCGCC	1 cut(s)	228
PpsI	GAGTC	2 cut(s)	29, 95
PspN4I	GGNNCC	1 cut(s)	226
PsyI	GACNNNGTC	2 cut(s)	38, 119
SatI	GCNGC	4 cut(s)	140, 177, 212, 228
Sau3AI	GATC	3 cut(s)	168, 182, 190
SchI	GAGTC	2 cut(s)	29, 95
SduI	GDGCHC	1 cut(s)	99
SetI	ASST	3 cut(s)	87, 92, 123
SfaNI	GCATC	1 cut(s)	198
SfoI	GGCGCC	1 cut(s)	226
SsiI	CCGC	4 cut(s)	61, 140, 161, 228
SspDI	GGCGCC	1 cut(s)	224
TaaI	ACNGT	1 cut(s)	49
TaiI	ACGT	1 cut(s)	123
TaqI	TCGA	3 cut(s)	69, 167, 185
TauI	GCSGC	2 cut(s)	142, 230
TfiI	GAWTC	1 cut(s)	196
TseI	GCWGC	2 cut(s)	176, 211
TspGWI	ACGGA	2 cut(s)	28, 94
Tth111I	GACNNNGTC	2 cut(s)	38, 119
XmiI	GTMKAC	1 cut(s)	114
ZraI	GACGTC	1 cut(s)	121

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.