Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0002423

Physical Location & Seq

Genomic Coordinates Forward (+)

8411853 .. 8414119

Gene Structure 2267 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027098

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGTCCTCCTCCTCCTTCACTCTTCCTGATGAAGACTCCGTTCCCACCGCCGGGTCAACCCGCCCCTTCGACGACGATGACTACCTCCGCTACGAGCATGAATCCGTCGTAGTAGACGACGTGTTCGCGACTGAGACAGAGGCTCCTTCTCCGCCTCAAGAGAAGTTTCATGCTGAGGTAGACAAGAACTACTGGAAGGCAGTTGCAGATATCATTCCCAACGAGGTGCCAGCAATAGAGAAGAAGAGAGGGAAGAAGGATCAAGAAAAGAAGCCTTCCATTGTCGTTGTGCAAGGTCCAAAACCTGGTAAGCCAACTGAGCTCCCGAAGATGAGGCAGATACTTCTAAAATTGAGGCATAATACGCCTCCTCACCTAAAGCCTTCGCCGCCGGCACCAGCCGCTACCCCTGAGGCTGTAGTTGCCACTGTGGCAGCTGCGCCCGAGGCTGTAACTGCTGTCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0006897 GO:0006898 GO:0008150 GO:0009504 GO:0009507 GO:0009524 GO:0009526 GO:0009536 GO:0009941 GO:0012506 GO:0016020 GO:0016192 GO:0030117 GO:0030118 GO:0030120 GO:0030125 GO:0030135 GO:0030136 GO:0030276 GO:0030659 GO:0030662 GO:0030665 GO:0031090 GO:0031410 GO:0031967 GO:0031975 GO:0031982 GO:0032050 GO:0032991 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048475 GO:0051179 GO:0051234 GO:0071944 GO:0072583 GO:0097708 GO:0098588 GO:0098657 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04142 ko04144 ko04721 ko04961 ko05016 ko05100 map04142 map04144 map04721 map04961 map05016 map05100

Pfam Domains

Protein Families

Clathrin_lg_ch

Protein Analysis

155

Amino Acids

16.77

Weight (kDa)

5.39

Isoelectric Point (pI)

60.67

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002423)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40060
fragaria_vesca	FvH4_4g08020 FvH4_7g24260
malus_domestica	MD00G1024200.v1.1 MD00G1047100.v1.1 MD00G1047900.v1.1 MD00G1048400.v1.1 MD00G1062700.v1.1 MD01G1132200.v1.1 MD01G1150700.v1.1 MD01G1152000.v1.1 MD05G1333900.v1.1 MD07G1216800.v1.1 MD07G1219900.v1.1
prunus_persica	Prupe.2G248500_v2.0.a1
pyrus_communis	pycom01g16830 pycom01g16850 pycom01g16880 pycom07g19900 pycom11g19450
rosa_chinensis	RchiOBHm_Chr1g0369851
rosa_laevigata	RLG00000027088 RLG00000027098
rosa_multiflora	Rmu_co8474619.1_g000001 Rmu_sc0008140.1_g000010
rosa_roxburghii	Rroxscaffold_3G00232620 Rroxscaffold_4G00286940 Rroxscaffold_4G00287110 Rroxscaffold_4G00322920
rosa_rugosa	Rorug01G0352700
rosa_samantha	Rh1AG194100 Rh1AG361200 Rh1BG178100 Rh1BG324900 Rh1CG179000 Rh1CG338100 Rh1DG087000 Rh1DG207800 Rh1DG355300
rosa_wichuraiana	Rw0G015470 Rw1G031810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	226, 394
AccB7I	CCANNNNNTGG	1 cut(s)	305
AccI	GTMKAC	2 cut(s)	114, 180
AccII	CGCG	1 cut(s)	128
AciI	CCGC	6 cut(s)	48, 61, 88, 152, 389, 402
AclWI	GGATC	1 cut(s)	267
AfiI	CCNNNNNNNGG	3 cut(s)	50, 51, 305
AflIII	ACRYGT	1 cut(s)	120
AjiI	CACGTC	1 cut(s)	121
AjnI	CCWGG	1 cut(s)	304
AluBI	AGCT	2 cut(s)	322, 437
AluI	AGCT	2 cut(s)	322, 437
Alw21I	GWGCWC	1 cut(s)	324
Alw26I	GTCTC	1 cut(s)	128
AlwI	GGATC	1 cut(s)	267
Ama87I	CYCGRG	1 cut(s)	443
ApeKI	GCWGC	2 cut(s)	434, 437
ArsI	GACNNNNNNTTYG	2 cut(s)	107, 139
AspLEI	GCGC	1 cut(s)	442
AspS9I	GGNCC	1 cut(s)	296
AsuC2I	CCSGG	1 cut(s)	52
AsuHPI	GGTGA	1 cut(s)	365
AvaI	CYCGRG	1 cut(s)	443
AvaII	GGWCC	1 cut(s)	296
AxyI	CCTNAGG	1 cut(s)	411
BanI	GGYRCC	2 cut(s)	226, 394
BanII	GRGCYC	1 cut(s)	324
BbsI	GAAGAC	1 cut(s)	39
Bbv12I	GWGCWC	1 cut(s)	324
BbvCI	CCTCAGC	1 cut(s)	174
BbvI	GCAGC	2 cut(s)	424, 446
BciT130I	CCWGG	1 cut(s)	306
BcnI	CCSGG	1 cut(s)	52
BcoDI	GTCTC	1 cut(s)	128
BfmI	CTRYAG	1 cut(s)	417
BglI	GCCNNNNNGGC	1 cut(s)	431
BisI	GCNGC	4 cut(s)	389, 402, 435, 438
BlsI	GCNGC	4 cut(s)	390, 403, 436, 439
Bme1390I	CCNGG	2 cut(s)	52, 306
Bme18I	GGWCC	1 cut(s)	296
BmeT110I	CYCGRG	1 cut(s)	443
BmgBI	CACGTC	1 cut(s)	121
BmgT120I	GGNCC	1 cut(s)	296
BmiI	GGNNCC	3 cut(s)	144, 228, 396
BmrFI	CCNGG	2 cut(s)	52, 306
BpiI	GAAGAC	1 cut(s)	39
Bpu10I	CCTNAGC	1 cut(s)	174
BpuEI	CTTGAG	1 cut(s)	141
BpuMI	CCSGG	1 cut(s)	52
BsaJI	CCNNGG	1 cut(s)	444
BsaXI	ACNNNNNCTCC	2 cut(s)	127, 157
Bsc4I	CCNNNNNNNGG	3 cut(s)	50, 51, 305
Bse118I	RCCGGY	1 cut(s)	391
Bse1I	ACTGG	1 cut(s)	197
Bse21I	CCTNAGG	1 cut(s)	411
BseBI	CCWGG	1 cut(s)	306
BseDI	CCNNGG	1 cut(s)	444
BseLI	CCNNNNNNNGG	3 cut(s)	50, 51, 305
BseMII	CTCAG	4 cut(s)	123, 165, 309, 402
BseNI	ACTGG	1 cut(s)	197
BseRI	GAGGAG	1 cut(s)	360
BseXI	GCAGC	2 cut(s)	424, 446
Bsh1236I	CGCG	1 cut(s)	128
BshNI	GGYRCC	2 cut(s)	226, 394
BsiHKAI	GWGCWC	1 cut(s)	324
BsiHKCI	CYCGRG	1 cut(s)	443
BsiSI	CCGG	2 cut(s)	51, 392
BslI	CCNNNNNNNGG	3 cut(s)	50, 51, 305
BsmAI	GTCTC	1 cut(s)	128
BsoBI	CYCGRG	1 cut(s)	443
Bsp1286I	GDGCHC	1 cut(s)	324
Bsp143I	GATC	1 cut(s)	259
Bsp68I	TCGCGA	1 cut(s)	128
BspACI	CCGC	6 cut(s)	48, 61, 88, 152, 389, 402
BspCNI	CTCAG	4 cut(s)	124, 166, 310, 403
BspFNI	CGCG	1 cut(s)	128
BspLI	GGNNCC	3 cut(s)	144, 228, 396
BspPI	GGATC	1 cut(s)	267
BspT107I	GGYRCC	2 cut(s)	226, 394
BsrFI	RCCGGY	1 cut(s)	391
BsrI	ACTGG	1 cut(s)	197
BssAI	RCCGGY	1 cut(s)	391
BssECI	CCNNGG	1 cut(s)	444
BssMI	GATC	1 cut(s)	259
Bst2UI	CCWGG	1 cut(s)	306
Bst4CI	ACNGT	1 cut(s)	430
Bst6I	CTCTTC	2 cut(s)	27, 239
BstC8I	GCNNGC	2 cut(s)	231, 393
BstDEI	CTNAG	4 cut(s)	132, 174, 318, 411
BstFNI	CGCG	1 cut(s)	128
BstHHI	GCGC	1 cut(s)	442
BstKTI	GATC	1 cut(s)	262
BstMAI	GTCTC	1 cut(s)	128
BstMBI	GATC	1 cut(s)	259
BstMWI	GCNNNNNNNGC	8 cut(s)	319, 364, 388, 401, 422, 431, 446, 455
BstNI	CCWGG	1 cut(s)	306
BstSCI	CCNGG	2 cut(s)	50, 304
BstSFI	CTRYAG	1 cut(s)	417
BstUI	CGCG	1 cut(s)	128
BstV1I	GCAGC	2 cut(s)	424, 446
BstV2I	GAAGAC	1 cut(s)	39
Bsu36I	CCTNAGG	1 cut(s)	411
BtrI	CACGTC	1 cut(s)	121
BtsIMutI	CAGTG	1 cut(s)	426
BtuMI	TCGCGA	1 cut(s)	128
Cac8I	GCNNGC	2 cut(s)	231, 393
CfoI	GCGC	1 cut(s)	442
Cfr10I	RCCGGY	1 cut(s)	391
Cfr13I	GGNCC	1 cut(s)	296
CsiI	ACCWGGT	1 cut(s)	304
CviAII	CATG	2 cut(s)	98, 170
CviJI	RGCY	9 cut(s)	143, 274, 313, 322, 382, 401, 416, 437, 449
CviKI_1	RGCY	9 cut(s)	143, 274, 313, 322, 382, 401, 416, 437, 449
DdeI	CTNAG	4 cut(s)	132, 174, 318, 411
DpnI	GATC	1 cut(s)	261
DpnII	GATC	1 cut(s)	259
Eam1104I	CTCTTC	2 cut(s)	27, 239
EarI	CTCTTC	2 cut(s)	27, 239
EciI	GGCGGA	1 cut(s)	141
Ecl136II	GAGCTC	1 cut(s)	322
Eco24I	GRGCYC	1 cut(s)	324
Eco32I	GATATC	1 cut(s)	211
Eco47I	GGWCC	1 cut(s)	296
Eco53kI	GAGCTC	1 cut(s)	322
Eco81I	CCTNAGG	1 cut(s)	411
Eco88I	CYCGRG	1 cut(s)	443
EcoICRI	GAGCTC	1 cut(s)	322
EcoRII	CCWGG	1 cut(s)	304
EcoRV	GATATC	1 cut(s)	211
EcoT38I	GRGCYC	1 cut(s)	324
FaeI	CATG	2 cut(s)	101, 173
FaiI	YATR	3 cut(s)	99, 171, 360
FatI	CATG	2 cut(s)	97, 169
FauI	CCCGC	1 cut(s)	68
FblI	GTMKAC	2 cut(s)	114, 180
Fnu4HI	GCNGC	4 cut(s)	389, 402, 435, 438
FriOI	GRGCYC	1 cut(s)	324
Fsp4HI	GCNGC	4 cut(s)	389, 402, 435, 438
GlaI	GCGC	1 cut(s)	441
GluI	GCNGC	4 cut(s)	389, 402, 435, 438
HapII	CCGG	2 cut(s)	51, 392
HhaI	GCGC	1 cut(s)	442
Hin1II	CATG	2 cut(s)	101, 173
Hin6I	GCGC	1 cut(s)	440
HinP1I	GCGC	1 cut(s)	440
HincII	GTYRAC	1 cut(s)	57
HindII	GTYRAC	1 cut(s)	57
HinfI	GANTC	2 cut(s)	35, 101
HpaII	CCGG	2 cut(s)	51, 392
HphI	GGTGA	1 cut(s)	365
Hpy166II	GTNNAC	3 cut(s)	57, 115, 181
Hpy188III	TCNNGA	5 cut(s)	26, 127, 158, 263, 325
Hpy8I	GTNNAC	3 cut(s)	57, 115, 181
Hpy99I	CGWCG	4 cut(s)	74, 77, 110, 122
HpyAV	CCTTC	7 cut(s)	25, 76, 156, 190, 250, 285, 393
HpyCH4III	ACNGT	1 cut(s)	430
HpyCH4IV	ACGT	1 cut(s)	120
HpyCH4V	TGCA	2 cut(s)	206, 292
HpyF10VI	GCNNNNNNNGC	8 cut(s)	319, 364, 388, 401, 422, 431, 446, 455
HpyF3I	CTNAG	4 cut(s)	132, 174, 318, 411
HpySE526I	ACGT	1 cut(s)	120
Hsp92II	CATG	2 cut(s)	101, 173
HspAI	GCGC	1 cut(s)	440
KroI	GCCGGC	1 cut(s)	391
KroNI	GCCGGC	1 cut(s)	393
Kzo9I	GATC	1 cut(s)	259
LmnI	GCTCC	2 cut(s)	148, 327
LpnPI	CCDG	9 cut(s)	39, 64, 178, 243, 291, 318, 405, 411, 423
Lsp1109I	GCAGC	2 cut(s)	424, 446
MabI	ACCWGGT	1 cut(s)	304
MaeII	ACGT	1 cut(s)	120
MaeIII	GTNAC	1 cut(s)	451
MalI	GATC	1 cut(s)	261
MboI	GATC	1 cut(s)	259
MboII	GAAGA	6 cut(s)	14, 44, 253, 256, 265, 340
MhlI	GDGCHC	1 cut(s)	324
MluCI	AATT	1 cut(s)	350
MlyI	GAGTC	1 cut(s)	29
MroNI	GCCGGC	1 cut(s)	391
MspA1I	CMGCKG	1 cut(s)	437
MspI	CCGG	2 cut(s)	51, 392
MspR9I	CCNGG	2 cut(s)	52, 306
MvaI	CCWGG	1 cut(s)	306
MvnI	CGCG	1 cut(s)	128
MwoI	GCNNNNNNNGC	8 cut(s)	319, 364, 388, 401, 422, 431, 446, 455
NaeI	GCCGGC	1 cut(s)	393
NciI	CCSGG	1 cut(s)	52
NdeII	GATC	1 cut(s)	259
NgoMIV	GCCGGC	1 cut(s)	391
NlaIII	CATG	2 cut(s)	101, 173
NlaIV	GGNNCC	3 cut(s)	144, 228, 396
NruI	TCGCGA	1 cut(s)	128
PcsI	WCGNNNNNNNCGW	1 cut(s)	114
PdiI	GCCGGC	1 cut(s)	393
PfeI	GAWTC	1 cut(s)	101
PflMI	CCANNNNNTGG	1 cut(s)	305
PkrI	GCNGC	4 cut(s)	390, 403, 436, 439
PleI	GAGTC	1 cut(s)	29
PpsI	GAGTC	1 cut(s)	29
Psp124BI	GAGCTC	1 cut(s)	324
Psp6I	CCWGG	1 cut(s)	304
PspGI	CCWGG	1 cut(s)	304
PspN4I	GGNNCC	3 cut(s)	144, 228, 396
PspPI	GGNCC	1 cut(s)	296
PvuII	CAGCTG	1 cut(s)	437
RruI	TCGCGA	1 cut(s)	128
SacI	GAGCTC	1 cut(s)	324
SatI	GCNGC	4 cut(s)	389, 402, 435, 438
Sau3AI	GATC	1 cut(s)	259
Sau96I	GGNCC	1 cut(s)	296
SchI	GAGTC	1 cut(s)	29
ScrFI	CCNGG	2 cut(s)	52, 306
SduI	GDGCHC	1 cut(s)	324
SetI	ASST	9 cut(s)	87, 123, 180, 228, 298, 307, 324, 378, 439
SexAI	ACCWGGT	1 cut(s)	304
SfcI	CTRYAG	1 cut(s)	417
SinI	GGWCC	1 cut(s)	296
SmlI	CTYRAG	1 cut(s)	156
SmoI	CTYRAG	1 cut(s)	156
Sse9I	AATT	1 cut(s)	350
SsiI	CCGC	6 cut(s)	48, 61, 88, 152, 389, 402
SstI	GAGCTC	1 cut(s)	324
StyD4I	CCNGG	2 cut(s)	50, 304
TaaI	ACNGT	1 cut(s)	430
TaiI	ACGT	1 cut(s)	123
TaqI	TCGA	1 cut(s)	69
TasI	AATT	1 cut(s)	350
TauI	GCSGC	2 cut(s)	391, 404
TfiI	GAWTC	1 cut(s)	101
TscAI	CASTG	1 cut(s)	433
TseI	GCWGC	2 cut(s)	434, 437
TspDTI	ATGAA	3 cut(s)	45, 114, 158
TspGWI	ACGGA	2 cut(s)	28, 94
TspRI	CASTG	1 cut(s)	433
Van91I	CCANNNNNTGG	1 cut(s)	305
VpaK11BI	GGWCC	1 cut(s)	296
XmiI	GTMKAC	2 cut(s)	114, 180

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.