Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0002423

Physical Location & Seq

Genomic Coordinates Forward (+)

25917538 .. 25922318

Gene Structure 4781 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1150700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 720 bp

ATGACCCCCGACTCCCCTCCCAGCGATTCGACTCCTTCGTCGACACCGAGTCGCTCAAGGACTCCGCCACCGATTCCCCAATCTTCCACGGCTCCACCGCAGGCGATGCTTTCGCCACTCAGTTTGCGTCGGAGGCCTTTTCTCCTCCGTCGATCTATGCCGAATCGAATGGACAGGGCTTTGGTGGAGGCATTGGCGGGTCCGACGATCCAGCAGAATGCAATTCAGCTCGAGGAGAAGGAAAGGCGGGAAAAGGAGTTGTTGGTTCAGATAATCGAGGAAGCAGATGAATTCAAGGTTGGATTCTACCAGAAGAGGAAGATCACCACTGAAAATAACAAGGCTGCTAACAGGGAAAGAGAGAAGCTGTTCCTGACTAATCAAGAGAAGTTTCATGCTGAGGTAGACAAGAACTACTGGAAGGCAATTGCTGACCTCATTCCCAATGAGGTGCCGGCTATAGAGAAGAAGAGAGGGAAGAAGGATCAGGAAAAGAAGAAGCCTTCCATTCTCGTTGTCCAAGGACCAAAGCCTGGAAAGCCAACAGAGCTTTCAAGGATGAGGCAGATACTTCTAAAATTGAAGCACAATACCCCTCCCCACCTTAAGCCTTCACCCCCAGCCCCAGCTCCCGCCAAGGTTGCAAAACTGAGTACTTCTGCTCCCCCCAAAGCTGCAATTGTCGCAGCTACCCCCGATGCTGTAGTTGCTGCTTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0006897 GO:0006898 GO:0008150 GO:0009504 GO:0009507 GO:0009524 GO:0009526 GO:0009536 GO:0009941 GO:0012506 GO:0016020 GO:0016192 GO:0030117 GO:0030118 GO:0030120 GO:0030125 GO:0030135 GO:0030136 GO:0030276 GO:0030659 GO:0030662 GO:0030665 GO:0031090 GO:0031410 GO:0031967 GO:0031975 GO:0031982 GO:0032050 GO:0032991 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048475 GO:0051179 GO:0051234 GO:0071944 GO:0072583 GO:0097708 GO:0098588 GO:0098657 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04142 ko04144 ko04721 ko04961 ko05016 ko05100 map04142 map04144 map04721 map04961 map05016 map05100

Pfam Domains

Protein Families

Clathrin_lg_ch

Protein Analysis

240

Amino Acids

26.54

Weight (kDa)

10.08

Isoelectric Point (pI)

66.82

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002423)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40060
fragaria_vesca	FvH4_4g08020 FvH4_7g24260
malus_domestica	MD00G1024200.v1.1 MD00G1047100.v1.1 MD00G1047900.v1.1 MD00G1048400.v1.1 MD00G1062700.v1.1 MD01G1132200.v1.1 MD01G1150700.v1.1 MD01G1152000.v1.1 MD05G1333900.v1.1 MD07G1216800.v1.1 MD07G1219900.v1.1
prunus_persica	Prupe.2G248500_v2.0.a1
pyrus_communis	pycom01g16830 pycom01g16850 pycom01g16880 pycom07g19900 pycom11g19450
rosa_chinensis	RchiOBHm_Chr1g0369851
rosa_laevigata	RLG00000027088 RLG00000027098
rosa_multiflora	Rmu_co8474619.1_g000001 Rmu_sc0008140.1_g000010
rosa_roxburghii	Rroxscaffold_3G00232620 Rroxscaffold_4G00286940 Rroxscaffold_4G00287110 Rroxscaffold_4G00322920
rosa_rugosa	Rorug01G0352700
rosa_samantha	Rh1AG194100 Rh1AG361200 Rh1BG178100 Rh1BG324900 Rh1CG179000 Rh1CG338100 Rh1DG087000 Rh1DG207800 Rh1DG355300
rosa_wichuraiana	Rw0G015470 Rw1G031810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	37
AccB1I	GGYRCC	1 cut(s)	451
AccB7I	CCANNNNNTGG	1 cut(s)	533
AccI	GTMKAC	2 cut(s)	41, 405
AciI	CCGC	5 cut(s)	65, 98, 197, 247, 633
AclWI	GGATC	2 cut(s)	202, 492
AcsI	RAATTY	1 cut(s)	290
AfaI	GTAC	1 cut(s)	655
AfiI	CCNNNNNNNGG	1 cut(s)	533
AflII	CTTAAG	1 cut(s)	605
AgsI	TTSAA	3 cut(s)	295, 555, 583
AhdI	GACNNNNNGTC	1 cut(s)	48
AjnI	CCWGG	1 cut(s)	532
AjuI	GAANNNNNNNTTGG	4 cut(s)	282, 314, 535, 567
AluBI	AGCT	6 cut(s)	229, 367, 550, 629, 674, 689
AluI	AGCT	6 cut(s)	229, 367, 550, 629, 674, 689
AlwI	GGATC	2 cut(s)	202, 492
Ama87I	CYCGRG	1 cut(s)	230
AoxI	GGCC	1 cut(s)	134
ApeKI	GCWGC	4 cut(s)	344, 674, 686, 710
ApoI	RAATTY	1 cut(s)	290
Asp700I	GAANNNNTTC	1 cut(s)	368
AspS9I	GGNCC	2 cut(s)	200, 524
AsuHPI	GGTGA	2 cut(s)	316, 606
AvaI	CYCGRG	1 cut(s)	230
AvaII	GGWCC	2 cut(s)	200, 524
BanI	GGYRCC	1 cut(s)	451
BbvCI	CCTCAGC	1 cut(s)	399
BbvI	GCAGC	4 cut(s)	331, 661, 697, 698
BceAI	ACGGC	1 cut(s)	105
BciT130I	CCWGG	1 cut(s)	534
BfmI	CTRYAG	2 cut(s)	459, 702
BfrI	CTTAAG	1 cut(s)	605
BisI	GCNGC	4 cut(s)	345, 675, 687, 711
BlsI	GCNGC	4 cut(s)	346, 676, 688, 712
BmcAI	AGTACT	1 cut(s)	655
Bme1390I	CCNGG	1 cut(s)	534
Bme18I	GGWCC	2 cut(s)	200, 524
BmeRI	GACNNNNNGTC	1 cut(s)	48
BmeT110I	CYCGRG	1 cut(s)	230
BmgT120I	GGNCC	2 cut(s)	200, 524
BmiI	GGNNCC	3 cut(s)	93, 201, 453
BmrFI	CCNGG	1 cut(s)	534
BmsI	GCATC	2 cut(s)	96, 688
Bpu10I	CCTNAGC	1 cut(s)	399
BpuEI	CTTGAG	1 cut(s)	40
BsaJI	CCNNGG	3 cut(s)	87, 520, 636
BsaXI	ACNNNNNCTCC	2 cut(s)	646, 676
Bsc4I	CCNNNNNNNGG	1 cut(s)	533
Bse118I	RCCGGY	1 cut(s)	454
Bse1I	ACTGG	1 cut(s)	422
BseBI	CCWGG	1 cut(s)	534
BseDI	CCNNGG	3 cut(s)	87, 520, 636
BseGI	GGATG	1 cut(s)	564
BseLI	CCNNNNNNNGG	1 cut(s)	533
BseMII	CTCAG	3 cut(s)	133, 390, 641
BseNI	ACTGG	1 cut(s)	422
BseRI	GAGGAG	2 cut(s)	134, 248
BseXI	GCAGC	4 cut(s)	331, 661, 697, 698
BseYI	CCCAGC	3 cut(s)	20, 619, 625
BshFI	GGCC	1 cut(s)	136
BshNI	GGYRCC	1 cut(s)	451
BsiHKCI	CYCGRG	1 cut(s)	230
BsiSI	CCGG	1 cut(s)	455
BslI	CCNNNNNNNGG	1 cut(s)	533
BsmI	GAATGC	1 cut(s)	223
BsnI	GGCC	1 cut(s)	136
BsoBI	CYCGRG	1 cut(s)	230
Bsp143I	GATC	4 cut(s)	152, 207, 321, 484
BspACI	CCGC	5 cut(s)	65, 98, 197, 247, 633
BspANI	GGCC	1 cut(s)	136
BspCNI	CTCAG	3 cut(s)	132, 391, 642
BspLI	GGNNCC	3 cut(s)	93, 201, 453
BspPI	GGATC	2 cut(s)	202, 492
BspT107I	GGYRCC	1 cut(s)	451
BspTI	CTTAAG	1 cut(s)	605
BsrFI	RCCGGY	1 cut(s)	454
BsrI	ACTGG	1 cut(s)	422
BssAI	RCCGGY	1 cut(s)	454
BssECI	CCNNGG	3 cut(s)	87, 520, 636
BssMI	GATC	4 cut(s)	152, 207, 321, 484
BssT1I	CCWWGG	2 cut(s)	520, 636
Bst2UI	CCWGG	1 cut(s)	534
Bst6I	CTCTTC	2 cut(s)	308, 464
BstAFI	CTTAAG	1 cut(s)	605
BstAPI	GCANNNNNTGC	1 cut(s)	106
BstC8I	GCNNGC	2 cut(s)	102, 456
BstDEI	CTNAG	3 cut(s)	119, 399, 650
BstDSI	CCRYGG	1 cut(s)	87
BstF5I	GGATG	1 cut(s)	564
BstKTI	GATC	4 cut(s)	155, 210, 324, 487
BstMBI	GATC	4 cut(s)	152, 207, 321, 484
BstMWI	GCNNNNNNNGC	7 cut(s)	106, 133, 538, 547, 641, 683, 707
BstNI	CCWGG	1 cut(s)	534
BstSCI	CCNGG	1 cut(s)	532
BstSFI	CTRYAG	2 cut(s)	459, 702
BstV1I	GCAGC	4 cut(s)	331, 661, 697, 698
BsuRI	GGCC	1 cut(s)	136
BtgI	CCRYGG	1 cut(s)	87
BtgZI	GCGATG	1 cut(s)	119
BtsCI	GGATG	1 cut(s)	564
BtsIMutI	CAGTG	1 cut(s)	327
Cac8I	GCNNGC	2 cut(s)	102, 456
Cfr10I	RCCGGY	1 cut(s)	454
Cfr13I	GGNCC	2 cut(s)	200, 524
CseI	GACGC	1 cut(s)	116
Csp6I	GTAC	1 cut(s)	654
CspCI	CAANNNNNGTGG	2 cut(s)	105, 140
CviAII	CATG	1 cut(s)	395
CviQI	GTAC	1 cut(s)	654
DdeI	CTNAG	3 cut(s)	119, 399, 650
DpnI	GATC	4 cut(s)	154, 209, 323, 486
DpnII	GATC	4 cut(s)	152, 207, 321, 484
DrdI	GACNNNNNNGTC	1 cut(s)	37
DriI	GACNNNNNGTC	1 cut(s)	48
DseDI	GACNNNNNNGTC	1 cut(s)	37
Eam1104I	CTCTTC	2 cut(s)	308, 464
Eam1105I	GACNNNNNGTC	1 cut(s)	48
EarI	CTCTTC	2 cut(s)	308, 464
EciI	GGCGGA	1 cut(s)	54
Eco130I	CCWWGG	2 cut(s)	520, 636
Eco147I	AGGCCT	1 cut(s)	136
Eco47I	GGWCC	2 cut(s)	200, 524
Eco88I	CYCGRG	1 cut(s)	230
EcoRI	GAATTC	1 cut(s)	290
EcoRII	CCWGG	1 cut(s)	532
EcoT14I	CCWWGG	2 cut(s)	520, 636
ErhI	CCWWGG	2 cut(s)	520, 636
FaeI	CATG	1 cut(s)	398
FaiI	YATR	3 cut(s)	158, 396, 461
FatI	CATG	1 cut(s)	394
FauI	CCCGC	3 cut(s)	190, 240, 640
FblI	GTMKAC	2 cut(s)	41, 405
Fnu4HI	GCNGC	4 cut(s)	345, 675, 687, 711
FokI	GGATG	1 cut(s)	571
Fsp4HI	GCNGC	4 cut(s)	345, 675, 687, 711
GluI	GCNGC	4 cut(s)	345, 675, 687, 711
GsaI	CCCAGC	3 cut(s)	24, 623, 629
HaeIII	GGCC	1 cut(s)	136
HapII	CCGG	1 cut(s)	455
HgaI	GACGC	1 cut(s)	116
Hin1II	CATG	1 cut(s)	398
HincII	GTYRAC	1 cut(s)	42
HindII	GTYRAC	1 cut(s)	42
HinfI	GANTC	8 cut(s)	11, 26, 31, 49, 61, 73, 163, 303
HpaII	CCGG	1 cut(s)	455
HphI	GGTGA	2 cut(s)	316, 606
Hpy166II	GTNNAC	2 cut(s)	42, 406
Hpy188I	TCNGA	3 cut(s)	132, 204, 270
Hpy188III	TCNNGA	3 cut(s)	373, 383, 488
Hpy8I	GTNNAC	2 cut(s)	42, 406
Hpy99I	CGWCG	4 cut(s)	43, 132, 153, 208
HpyAV	CCTTC	6 cut(s)	45, 232, 415, 475, 513, 621
HpyCH4V	TGCA	3 cut(s)	221, 644, 677
HpyF10VI	GCNNNNNNNGC	7 cut(s)	106, 133, 538, 547, 641, 683, 707
HpyF3I	CTNAG	3 cut(s)	119, 399, 650
Hsp92II	CATG	1 cut(s)	398
KroI	GCCGGC	1 cut(s)	454
KroNI	GCCGGC	1 cut(s)	456
Kzo9I	GATC	4 cut(s)	152, 207, 321, 484
LmnI	GCTCC	3 cut(s)	97, 634, 667
Lsp1109I	GCAGC	4 cut(s)	331, 661, 697, 698
LweI	GCATC	2 cut(s)	96, 688
MalI	GATC	4 cut(s)	154, 209, 323, 486
MboI	GATC	4 cut(s)	152, 207, 321, 484
MboII	GAAGA	7 cut(s)	75, 325, 331, 478, 481, 490, 508
MfeI	CAATTG	2 cut(s)	426, 678
MluCI	AATT	5 cut(s)	222, 290, 426, 578, 678
MlyI	GAGTC	4 cut(s)	5, 25, 55, 58
MmeI	TCCRAC	3 cut(s)	110, 227, 280
MroNI	GCCGGC	1 cut(s)	454
MroXI	GAANNNNTTC	1 cut(s)	368
MseI	TTAA	1 cut(s)	606
MspCI	CTTAAG	1 cut(s)	605
MspI	CCGG	1 cut(s)	455
MspR9I	CCNGG	1 cut(s)	534
MunI	CAATTG	2 cut(s)	426, 678
Mva1269I	GAATGC	1 cut(s)	223
MvaI	CCWGG	1 cut(s)	534
MwoI	GCNNNNNNNGC	7 cut(s)	106, 133, 538, 547, 641, 683, 707
NaeI	GCCGGC	1 cut(s)	456
NdeII	GATC	4 cut(s)	152, 207, 321, 484
NgoMIV	GCCGGC	1 cut(s)	454
NlaIII	CATG	1 cut(s)	398
NlaIV	GGNNCC	3 cut(s)	93, 201, 453
PaeR7I	CTCGAG	1 cut(s)	230
PceI	AGGCCT	1 cut(s)	136
PcsI	WCGNNNNNNNCGW	2 cut(s)	35, 44
PctI	GAATGC	1 cut(s)	223
PdiI	GCCGGC	1 cut(s)	456
PdmI	GAANNNNTTC	1 cut(s)	368
PfeI	GAWTC	4 cut(s)	26, 73, 163, 303
PflMI	CCANNNNNTGG	1 cut(s)	533
PkrI	GCNGC	4 cut(s)	346, 676, 688, 712
PleI	GAGTC	4 cut(s)	5, 25, 55, 57
PpsI	GAGTC	4 cut(s)	5, 25, 55, 57
Psp6I	CCWGG	1 cut(s)	532
PspFI	CCCAGC	3 cut(s)	20, 619, 625
PspGI	CCWGG	1 cut(s)	532
PspN4I	GGNNCC	3 cut(s)	93, 201, 453
PspPI	GGNCC	2 cut(s)	200, 524
PspXI	VCTCGAGB	1 cut(s)	230
RsaI	GTAC	1 cut(s)	655
RsaNI	GTAC	1 cut(s)	654
SalI	GTCGAC	1 cut(s)	40
SaqAI	TTAA	1 cut(s)	606
SatI	GCNGC	4 cut(s)	345, 675, 687, 711
Sau3AI	GATC	4 cut(s)	152, 207, 321, 484
Sau96I	GGNCC	2 cut(s)	200, 524
ScaI	AGTACT	1 cut(s)	655
SchI	GAGTC	4 cut(s)	5, 25, 55, 58
ScrFI	CCNGG	1 cut(s)	534
SfaNI	GCATC	2 cut(s)	96, 688
SfcI	CTRYAG	2 cut(s)	459, 702
Sfr274I	CTCGAG	1 cut(s)	230
SinI	GGWCC	2 cut(s)	200, 524
SlaI	CTCGAG	1 cut(s)	230
SmlI	CTYRAG	3 cut(s)	55, 230, 605
SmoI	CTYRAG	3 cut(s)	55, 230, 605
Sse9I	AATT	5 cut(s)	222, 290, 426, 578, 678
SseBI	AGGCCT	1 cut(s)	136
SsiI	CCGC	5 cut(s)	65, 98, 197, 247, 633
StuI	AGGCCT	1 cut(s)	136
StyD4I	CCNGG	1 cut(s)	532
StyI	CCWWGG	2 cut(s)	520, 636
TaqI	TCGA	6 cut(s)	29, 41, 151, 166, 231, 276
TasI	AATT	5 cut(s)	222, 290, 426, 578, 678
TatI	WGTACW	1 cut(s)	653
TfiI	GAWTC	4 cut(s)	26, 73, 163, 303
Tru1I	TTAA	1 cut(s)	606
Tru9I	TTAA	1 cut(s)	606
TscAI	CASTG	1 cut(s)	334
TseI	GCWGC	4 cut(s)	344, 674, 686, 710
TspDTI	ATGAA	2 cut(s)	303, 383
TspGWI	ACGGA	1 cut(s)	137
TspRI	CASTG	1 cut(s)	334
Van91I	CCANNNNNTGG	1 cut(s)	533
Vha464I	CTTAAG	1 cut(s)	605
VpaK11BI	GGWCC	2 cut(s)	200, 524
XapI	RAATTY	1 cut(s)	290
XhoI	CTCGAG	1 cut(s)	230
XmiI	GTMKAC	2 cut(s)	41, 405
XmnI	GAANNNNTTC	1 cut(s)	368
ZrmI	AGTACT	1 cut(s)	655

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.