Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0002423

Physical Location & Seq

Genomic Coordinates Forward (+)

25992634 .. 25994592

Gene Structure 1959 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1152000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGGCCTCGTTCACTCAGCCCGAAGACGACTCAGTCCCGCCCACCGTGTCAACTCGCCCATTCGACGACGACGGTTACCTGGGTTACGACCCCCGACTCCCCTCCCAGCCATTCGACTCCTTCGTCGACACCGAGTCGCTCAAGGACTCCGCCACCGATTCCCCAATCTTCCACGGCTCCGCCGCAGGCGATGCTTTCGCCACTCAGCCTGCGTCGGAGGCCTTCTCTCCTCCGTCGATCTACGCCGAATCGAATGGGCAGGGCTTTGATGGAGGTTTTGGCGTGTCCGACGATCCGATTTTGCCGCCTCCGTTGGAGATGCTGCCCGAGGAGGGCTTCGCTCTCAGAGAATGGAGGAGGCAGAATGCAATTCAGCTCGAGGAGAAGGAAAGGCGGGAAAAGGAGTTGTTGGTTCAGATAATCGAGGAAGCAGATGAATTCAAGGTGGGATTCTACCAGAAGAGGAAGATCACATCTGAAAATAACAAGGCTGCTAACAGGGAAAGGGAGAAGCTGTTCCTGGCTAATCAAGAGAAGTTTCATGCTGAGGTAGACAAGAACTACTGGAAGGCAATTGCTGACCTCATTCCAAATGAGGTGCCGGCTATAGAAAAGAAGAGAGGGAAGAAGGATCAGGAAAAGAAGCCATCCATTCTCGTTGTCCAAGGACCAAAGCCCGGAAAGCCAACCGAGCTTTCAAGGATGAGGCAGATACTTTTAAAGTTGAAGCACAATACACCTCCCCACCTTAAGCCTTCACCACCGGCCCCAGCTCCCGCCAAGGATGCAAAACCAAGTACTTCTGCTCCCCCCAAGGCAGCAATTGTCGCAGCTAGCCCCGACGCTGTAGTTGCTGCTTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0006897 GO:0006898 GO:0008150 GO:0009504 GO:0009507 GO:0009524 GO:0009526 GO:0009536 GO:0009941 GO:0012506 GO:0016020 GO:0016192 GO:0030117 GO:0030118 GO:0030120 GO:0030125 GO:0030135 GO:0030136 GO:0030276 GO:0030659 GO:0030662 GO:0030665 GO:0031090 GO:0031410 GO:0031967 GO:0031975 GO:0031982 GO:0032050 GO:0032991 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048475 GO:0051179 GO:0051234 GO:0071944 GO:0072583 GO:0097708 GO:0098588 GO:0098657 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04142 ko04144 ko04721 ko04961 ko05016 ko05100 map04142 map04144 map04721 map04961 map05016 map05100

Pfam Domains

Protein Families

Clathrin_lg_ch

Protein Analysis

288

Amino Acids

31.58

Weight (kDa)

5.35

Isoelectric Point (pI)

59.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Clathrin_lg_ch	PF01086	110 - 219	4.6e-07	Clathrin light chain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002423)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40060
fragaria_vesca	FvH4_4g08020 FvH4_7g24260
malus_domestica	MD00G1024200.v1.1 MD00G1047100.v1.1 MD00G1047900.v1.1 MD00G1048400.v1.1 MD00G1062700.v1.1 MD01G1132200.v1.1 MD01G1150700.v1.1 MD01G1152000.v1.1 MD05G1333900.v1.1 MD07G1216800.v1.1 MD07G1219900.v1.1
prunus_persica	Prupe.2G248500_v2.0.a1
pyrus_communis	pycom01g16830 pycom01g16850 pycom01g16880 pycom07g19900 pycom11g19450
rosa_chinensis	RchiOBHm_Chr1g0369851
rosa_laevigata	RLG00000027088 RLG00000027098
rosa_multiflora	Rmu_co8474619.1_g000001 Rmu_sc0008140.1_g000010
rosa_roxburghii	Rroxscaffold_3G00232620 Rroxscaffold_4G00286940 Rroxscaffold_4G00287110 Rroxscaffold_4G00322920
rosa_rugosa	Rorug01G0352700
rosa_samantha	Rh1AG194100 Rh1AG361200 Rh1BG178100 Rh1BG324900 Rh1CG179000 Rh1CG338100 Rh1DG087000 Rh1DG207800 Rh1DG355300
rosa_wichuraiana	Rw0G015470 Rw1G031810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	32, 122
AccB1I	GGYRCC	1 cut(s)	598
AccI	GTMKAC	2 cut(s)	126, 552
AciI	CCGC	7 cut(s)	38, 150, 180, 183, 305, 394, 777
AclWI	GGATC	2 cut(s)	287, 639
AcsI	RAATTY	1 cut(s)	437
AfaI	GTAC	1 cut(s)	799
AfiI	CCNNNNNNNGG	2 cut(s)	332, 677
AflII	CTTAAG	1 cut(s)	749
AgsI	TTSAA	3 cut(s)	442, 699, 727
AhdI	GACNNNNNGTC	1 cut(s)	133
AjnI	CCWGG	2 cut(s)	78, 519
AjuI	GAANNNNNNNTTGG	2 cut(s)	679, 711
AloI	GAACNNNNNNTCC	2 cut(s)	500, 532
AluBI	AGCT	5 cut(s)	376, 514, 694, 773, 833
AluI	AGCT	5 cut(s)	376, 514, 694, 773, 833
AlwI	GGATC	2 cut(s)	287, 639
Ama87I	CYCGRG	2 cut(s)	326, 377
AoxI	GGCC	3 cut(s)	3, 219, 765
ApeKI	GCWGC	5 cut(s)	322, 491, 818, 830, 854
ApoI	RAATTY	1 cut(s)	437
Asp700I	GAANNNNTTC	1 cut(s)	515
AspS9I	GGNCC	2 cut(s)	668, 766
AsuC2I	CCSGG	1 cut(s)	678
AsuHPI	GGTGA	1 cut(s)	750
AsuNHI	GCTAGC	1 cut(s)	833
AvaI	CYCGRG	2 cut(s)	326, 377
AvaII	GGWCC	1 cut(s)	668
BanI	GGYRCC	1 cut(s)	598
BbsI	GAAGAC	1 cut(s)	30
BbvCI	CCTCAGC	1 cut(s)	546
BbvI	GCAGC	5 cut(s)	309, 478, 830, 841, 842
BccI	CCATC	2 cut(s)	263, 655
BceAI	ACGGC	1 cut(s)	190
BciT130I	CCWGG	2 cut(s)	80, 521
BcnI	CCSGG	1 cut(s)	678
BfaI	CTAG	1 cut(s)	834
BfmI	CTRYAG	2 cut(s)	606, 846
BfrI	CTTAAG	1 cut(s)	749
BisI	GCNGC	7 cut(s)	183, 305, 323, 492, 819, 831, 855
BlsI	GCNGC	7 cut(s)	184, 306, 324, 493, 820, 832, 856
BmcAI	AGTACT	1 cut(s)	799
Bme1390I	CCNGG	3 cut(s)	80, 521, 678
Bme18I	GGWCC	1 cut(s)	668
BmeRI	GACNNNNNGTC	1 cut(s)	133
BmeT110I	CYCGRG	2 cut(s)	326, 377
BmgT120I	GGNCC	2 cut(s)	668, 766
BmiI	GGNNCC	3 cut(s)	178, 600, 768
BmrFI	CCNGG	3 cut(s)	80, 521, 678
BmsI	GCATC	3 cut(s)	181, 309, 775
BmtI	GCTAGC	1 cut(s)	837
BpiI	GAAGAC	1 cut(s)	30
BplI	GAGNNNNNCTC	2 cut(s)	209, 241
Bpu10I	CCTNAGC	1 cut(s)	546
BpuEI	CTTGAG	1 cut(s)	125
BpuMI	CCSGG	1 cut(s)	678
BsaJI	CCNNGG	6 cut(s)	79, 172, 327, 664, 780, 813
BsaXI	ACNNNNNCTCC	4 cut(s)	500, 530, 790, 820
Bsc4I	CCNNNNNNNGG	2 cut(s)	332, 677
Bse118I	RCCGGY	2 cut(s)	601, 763
Bse1I	ACTGG	1 cut(s)	569
BseBI	CCWGG	2 cut(s)	80, 521
BseDI	CCNNGG	6 cut(s)	79, 172, 327, 664, 780, 813
BseGI	GGATG	3 cut(s)	647, 708, 790
BseLI	CCNNNNNNNGG	2 cut(s)	332, 677
BseMII	CTCAG	5 cut(s)	29, 45, 218, 358, 537
BseNI	ACTGG	1 cut(s)	569
BseRI	GAGGAG	4 cut(s)	219, 344, 370, 395
BseXI	GCAGC	5 cut(s)	309, 478, 830, 841, 842
BseYI	CCCAGC	2 cut(s)	105, 769
BshFI	GGCC	3 cut(s)	5, 221, 767
BshNI	GGYRCC	1 cut(s)	598
BsiHKCI	CYCGRG	2 cut(s)	326, 377
BsiSI	CCGG	3 cut(s)	602, 678, 764
BslFI	GGGAC	1 cut(s)	20
BslI	CCNNNNNNNGG	2 cut(s)	332, 677
BsmFI	GGGAC	1 cut(s)	20
BsmI	GAATGC	1 cut(s)	370
BsnI	GGCC	3 cut(s)	5, 221, 767
BsoBI	CYCGRG	2 cut(s)	326, 377
Bsp143I	GATC	4 cut(s)	237, 292, 468, 631
BspACI	CCGC	7 cut(s)	38, 150, 180, 183, 305, 394, 777
BspANI	GGCC	3 cut(s)	5, 221, 767
BspCNI	CTCAG	5 cut(s)	28, 44, 217, 357, 538
BspLI	GGNNCC	3 cut(s)	178, 600, 768
BspOI	GCTAGC	1 cut(s)	837
BspPI	GGATC	2 cut(s)	287, 639
BspT107I	GGYRCC	1 cut(s)	598
BspTI	CTTAAG	1 cut(s)	749
BsrFI	RCCGGY	2 cut(s)	601, 763
BsrI	ACTGG	1 cut(s)	569
BssAI	RCCGGY	2 cut(s)	601, 763
BssECI	CCNNGG	6 cut(s)	79, 172, 327, 664, 780, 813
BssMI	GATC	4 cut(s)	237, 292, 468, 631
BssT1I	CCWWGG	3 cut(s)	664, 780, 813
Bst2UI	CCWGG	2 cut(s)	80, 521
Bst4CI	ACNGT	2 cut(s)	46, 74
Bst6I	CTCTTC	2 cut(s)	455, 611
BstAFI	CTTAAG	1 cut(s)	749
BstAPI	GCANNNNNTGC	1 cut(s)	191
BstC8I	GCNNGC	4 cut(s)	187, 210, 603, 835
BstDEI	CTNAG	5 cut(s)	15, 31, 204, 344, 546
BstDSI	CCRYGG	1 cut(s)	172
BstEII	GGTNACC	1 cut(s)	74
BstF5I	GGATG	3 cut(s)	647, 708, 790
BstKTI	GATC	4 cut(s)	240, 295, 471, 634
BstMBI	GATC	4 cut(s)	237, 292, 468, 631
BstMWI	GCNNNNNNNGC	7 cut(s)	191, 218, 682, 691, 785, 827, 851
BstNI	CCWGG	2 cut(s)	80, 521
BstPI	GGTNACC	1 cut(s)	74
BstSCI	CCNGG	3 cut(s)	78, 519, 676
BstSFI	CTRYAG	2 cut(s)	606, 846
BstV1I	GCAGC	5 cut(s)	309, 478, 830, 841, 842
BstV2I	GAAGAC	1 cut(s)	30
BsuRI	GGCC	3 cut(s)	5, 221, 767
BtgI	CCRYGG	1 cut(s)	172
BtgZI	GCGATG	1 cut(s)	204
BtsCI	GGATG	3 cut(s)	647, 708, 790
Cac8I	GCNNGC	4 cut(s)	187, 210, 603, 835
Cfr10I	RCCGGY	2 cut(s)	601, 763
Cfr13I	GGNCC	2 cut(s)	668, 766
CseI	GACGC	2 cut(s)	201, 851
Csp6I	GTAC	1 cut(s)	798
CviAII	CATG	1 cut(s)	542
CviQI	GTAC	1 cut(s)	798
DdeI	CTNAG	5 cut(s)	15, 31, 204, 344, 546
DpnI	GATC	4 cut(s)	239, 294, 470, 633
DpnII	GATC	4 cut(s)	237, 292, 468, 631
DraI	TTTAAA	1 cut(s)	720
DrdI	GACNNNNNNGTC	2 cut(s)	32, 122
DriI	GACNNNNNGTC	1 cut(s)	133
DseDI	GACNNNNNNGTC	2 cut(s)	32, 122
Eam1104I	CTCTTC	2 cut(s)	455, 611
Eam1105I	GACNNNNNGTC	1 cut(s)	133
EarI	CTCTTC	2 cut(s)	455, 611
EciI	GGCGGA	2 cut(s)	139, 169
Eco130I	CCWWGG	3 cut(s)	664, 780, 813
Eco147I	AGGCCT	1 cut(s)	221
Eco47I	GGWCC	1 cut(s)	668
Eco88I	CYCGRG	2 cut(s)	326, 377
Eco91I	GGTNACC	1 cut(s)	74
EcoO65I	GGTNACC	1 cut(s)	74
EcoRI	GAATTC	1 cut(s)	437
EcoRII	CCWGG	2 cut(s)	78, 519
EcoT14I	CCWWGG	3 cut(s)	664, 780, 813
ErhI	CCWWGG	3 cut(s)	664, 780, 813
FaeI	CATG	1 cut(s)	545
FaiI	YATR	2 cut(s)	543, 608
FaqI	GGGAC	1 cut(s)	20
FatI	CATG	1 cut(s)	541
FauI	CCCGC	3 cut(s)	45, 387, 784
FblI	GTMKAC	2 cut(s)	126, 552
Fnu4HI	GCNGC	7 cut(s)	183, 305, 323, 492, 819, 831, 855
FokI	GGATG	3 cut(s)	634, 715, 797
Fsp4HI	GCNGC	7 cut(s)	183, 305, 323, 492, 819, 831, 855
FspBI	CTAG	1 cut(s)	834
GluI	GCNGC	7 cut(s)	183, 305, 323, 492, 819, 831, 855
GsaI	CCCAGC	2 cut(s)	109, 773
HaeIII	GGCC	3 cut(s)	5, 221, 767
HapII	CCGG	3 cut(s)	602, 678, 764
HgaI	GACGC	2 cut(s)	201, 851
Hin1II	CATG	1 cut(s)	545
HincII	GTYRAC	2 cut(s)	51, 127
HindII	GTYRAC	2 cut(s)	51, 127
HinfI	GANTC	8 cut(s)	29, 96, 116, 134, 146, 158, 248, 450
HpaII	CCGG	3 cut(s)	602, 678, 764
HphI	GGTGA	1 cut(s)	750
Hpy166II	GTNNAC	4 cut(s)	12, 51, 127, 553
Hpy188I	TCNGA	6 cut(s)	217, 289, 297, 347, 417, 478
Hpy188III	TCNNGA	2 cut(s)	530, 635
Hpy8I	GTNNAC	4 cut(s)	12, 51, 127, 553
Hpy99I	CGWCG	8 cut(s)	68, 71, 74, 128, 217, 238, 293, 845
HpyAV	CCTTC	6 cut(s)	130, 232, 379, 562, 622, 765
HpyCH4III	ACNGT	2 cut(s)	46, 74
HpyCH4V	TGCA	2 cut(s)	368, 788
HpyF10VI	GCNNNNNNNGC	7 cut(s)	191, 218, 682, 691, 785, 827, 851
HpyF3I	CTNAG	5 cut(s)	15, 31, 204, 344, 546
Hsp92II	CATG	1 cut(s)	545
KroI	GCCGGC	1 cut(s)	601
KroNI	GCCGGC	1 cut(s)	603
Kzo9I	GATC	4 cut(s)	237, 292, 468, 631
LmnI	GCTCC	3 cut(s)	182, 778, 811
Lsp1109I	GCAGC	5 cut(s)	309, 478, 830, 841, 842
LweI	GCATC	3 cut(s)	181, 309, 775
MaeI	CTAG	1 cut(s)	834
MaeIII	GTNAC	2 cut(s)	74, 83
MalI	GATC	4 cut(s)	239, 294, 470, 633
MboI	GATC	4 cut(s)	237, 292, 468, 631
MboII	GAAGA	6 cut(s)	35, 160, 472, 478, 628, 637
MfeI	CAATTG	2 cut(s)	573, 822
MluCI	AATT	4 cut(s)	369, 437, 573, 822
MlyI	GAGTC	5 cut(s)	23, 90, 110, 140, 143
MmeI	TCCRAC	3 cut(s)	195, 294, 312
MroNI	GCCGGC	1 cut(s)	601
MroXI	GAANNNNTTC	1 cut(s)	515
MseI	TTAA	2 cut(s)	719, 750
MspCI	CTTAAG	1 cut(s)	749
MspI	CCGG	3 cut(s)	602, 678, 764
MspR9I	CCNGG	3 cut(s)	80, 521, 678
MunI	CAATTG	2 cut(s)	573, 822
Mva1269I	GAATGC	1 cut(s)	370
MvaI	CCWGG	2 cut(s)	80, 521
MwoI	GCNNNNNNNGC	7 cut(s)	191, 218, 682, 691, 785, 827, 851
NaeI	GCCGGC	1 cut(s)	603
NciI	CCSGG	1 cut(s)	678
NdeII	GATC	4 cut(s)	237, 292, 468, 631
NgoMIV	GCCGGC	1 cut(s)	601
NheI	GCTAGC	1 cut(s)	833
NlaIII	CATG	1 cut(s)	545
NlaIV	GGNNCC	3 cut(s)	178, 600, 768
PaeR7I	CTCGAG	1 cut(s)	377
PceI	AGGCCT	1 cut(s)	221
PcsI	WCGNNNNNNNCGW	2 cut(s)	120, 129
PctI	GAATGC	1 cut(s)	370
PdiI	GCCGGC	1 cut(s)	603
PdmI	GAANNNNTTC	1 cut(s)	515
PfeI	GAWTC	3 cut(s)	158, 248, 450
PflFI	GACNNNGTC	1 cut(s)	32
PkrI	GCNGC	7 cut(s)	184, 306, 324, 493, 820, 832, 856
PleI	GAGTC	5 cut(s)	23, 90, 110, 140, 142
PpsI	GAGTC	5 cut(s)	23, 90, 110, 140, 142
Psp6I	CCWGG	2 cut(s)	78, 519
PspEI	GGTNACC	1 cut(s)	74
PspFI	CCCAGC	2 cut(s)	105, 769
PspGI	CCWGG	2 cut(s)	78, 519
PspN4I	GGNNCC	3 cut(s)	178, 600, 768
PspPI	GGNCC	2 cut(s)	668, 766
PspXI	VCTCGAGB	1 cut(s)	377
PsyI	GACNNNGTC	1 cut(s)	32
RsaI	GTAC	1 cut(s)	799
RsaNI	GTAC	1 cut(s)	798
SalI	GTCGAC	1 cut(s)	125
SaqAI	TTAA	2 cut(s)	719, 750
SatI	GCNGC	7 cut(s)	183, 305, 323, 492, 819, 831, 855
Sau3AI	GATC	4 cut(s)	237, 292, 468, 631
Sau96I	GGNCC	2 cut(s)	668, 766
ScaI	AGTACT	1 cut(s)	799
SchI	GAGTC	5 cut(s)	23, 90, 110, 140, 143
ScrFI	CCNGG	3 cut(s)	80, 521, 678
SfaNI	GCATC	3 cut(s)	181, 309, 775
SfcI	CTRYAG	2 cut(s)	606, 846
Sfr274I	CTCGAG	1 cut(s)	377
SinI	GGWCC	1 cut(s)	668
SlaI	CTCGAG	1 cut(s)	377
SmlI	CTYRAG	3 cut(s)	140, 377, 749
SmoI	CTYRAG	3 cut(s)	140, 377, 749
Sse9I	AATT	4 cut(s)	369, 437, 573, 822
SseBI	AGGCCT	1 cut(s)	221
SsiI	CCGC	7 cut(s)	38, 150, 180, 183, 305, 394, 777
SspMI	CTAG	1 cut(s)	834
StuI	AGGCCT	1 cut(s)	221
StyD4I	CCNGG	3 cut(s)	78, 519, 676
StyI	CCWWGG	3 cut(s)	664, 780, 813
TaaI	ACNGT	2 cut(s)	46, 74
TaqI	TCGA	7 cut(s)	63, 114, 126, 236, 251, 378, 423
TasI	AATT	4 cut(s)	369, 437, 573, 822
TatI	WGTACW	1 cut(s)	797
TauI	GCSGC	2 cut(s)	185, 307
TfiI	GAWTC	3 cut(s)	158, 248, 450
Tru1I	TTAA	2 cut(s)	719, 750
Tru9I	TTAA	2 cut(s)	719, 750
TseI	GCWGC	5 cut(s)	322, 491, 818, 830, 854
TspDTI	ATGAA	2 cut(s)	450, 530
TspGWI	ACGGA	2 cut(s)	222, 300
Tth111I	GACNNNGTC	1 cut(s)	32
Vha464I	CTTAAG	1 cut(s)	749
VpaK11BI	GGWCC	1 cut(s)	668
XapI	RAATTY	1 cut(s)	437
XhoI	CTCGAG	1 cut(s)	377
XmiI	GTMKAC	2 cut(s)	126, 552
XmnI	GAANNNNTTC	1 cut(s)	515
XspI	CTAG	1 cut(s)	834
ZrmI	AGTACT	1 cut(s)	799

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.