Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr6

Orthogroup ID

OG0002423

Physical Location & Seq

Genomic Coordinates Forward (+)

8324130 .. 8327241

Gene Structure 3112 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000027088

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

ATGTCCTCCTCCTCCTTCACTCTTCCCGATGACGACTCCGTCCCCACCGCTGGGTCAACCCGCCCCTTCGACGACGATGACTACCTCCGCTACGAGCACGACTCCGTCGTAGTCGATGACGTGTTCGCGACTGAGACAGAGGCTCCATCTCCGCCGTCGATCTTCGCTGCTGGATCGGACGATCCGATTCTTCCGCCTCCGTCCGAGATGCTGCCGGAGGAGAGCTCCGCTCTCAGAGAATGGAGGAGTCAAGAGAAGTTTCATGCTGAGGTAGACCAGAACTACTGGAAGGCAGTTGCAGATCTCATTCCCAATGAGGTGCCAGCAATAGAGAAGAGAGGGAAGAAGGATCAAGAAAAGAAGCCTTCCATTGTCGTTGTGCAAGGTCCAAAACCTGGTCCAAAAACTGAGCTCTCGAGGATGAGGCAGATACTTCTAAAATTGAAGCATAATACGCCTCCTCACCTAAAGCCTTCGCCACCGGGACCAGCTGCTGCCCCTGAGGCTTTTCTGGTTTTGGTTCAATCATGGTTGATAACCCATATCGATGGGGACGACAAGCTAGAGTACGTTGTGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0006897 GO:0006898 GO:0008150 GO:0009504 GO:0009507 GO:0009524 GO:0009526 GO:0009536 GO:0009941 GO:0012506 GO:0016020 GO:0016192 GO:0030117 GO:0030118 GO:0030120 GO:0030125 GO:0030135 GO:0030136 GO:0030276 GO:0030659 GO:0030662 GO:0030665 GO:0031090 GO:0031410 GO:0031967 GO:0031975 GO:0031982 GO:0032050 GO:0032991 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048475 GO:0051179 GO:0051234 GO:0071944 GO:0072583 GO:0097708 GO:0098588 GO:0098657 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04142 ko04144 ko04721 ko04961 ko05016 ko05100 map04142 map04144 map04721 map04961 map05016 map05100

Pfam Domains

Protein Families

Clathrin_lg_ch

Protein Analysis

193

Amino Acids

21.26

Weight (kDa)

4.73

Isoelectric Point (pI)

63.78

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002423)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40060
fragaria_vesca	FvH4_4g08020 FvH4_7g24260
malus_domestica	MD00G1024200.v1.1 MD00G1047100.v1.1 MD00G1047900.v1.1 MD00G1048400.v1.1 MD00G1062700.v1.1 MD01G1132200.v1.1 MD01G1150700.v1.1 MD01G1152000.v1.1 MD05G1333900.v1.1 MD07G1216800.v1.1 MD07G1219900.v1.1
prunus_persica	Prupe.2G248500_v2.0.a1
pyrus_communis	pycom01g16830 pycom01g16850 pycom01g16880 pycom07g19900 pycom11g19450
rosa_chinensis	RchiOBHm_Chr1g0369851
rosa_laevigata	RLG00000027088 RLG00000027098
rosa_multiflora	Rmu_co8474619.1_g000001 Rmu_sc0008140.1_g000010
rosa_roxburghii	Rroxscaffold_3G00232620 Rroxscaffold_4G00286940 Rroxscaffold_4G00287110 Rroxscaffold_4G00322920
rosa_rugosa	Rorug01G0352700
rosa_samantha	Rh1AG194100 Rh1AG361200 Rh1BG178100 Rh1BG324900 Rh1CG179000 Rh1CG338100 Rh1DG087000 Rh1DG207800 Rh1DG355300
rosa_wichuraiana	Rw0G015470 Rw1G031810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	38
AccB1I	GGYRCC	1 cut(s)	319
AccB7I	CCANNNNNTGG	1 cut(s)	395
AccBSI	CCGCTC	1 cut(s)	230
AccI	GTMKAC	1 cut(s)	273
AccII	CGCG	1 cut(s)	128
AciI	CCGC	6 cut(s)	48, 61, 88, 152, 194, 228
AclWI	GGATC	3 cut(s)	176, 181, 357
AfaI	GTAC	1 cut(s)	569
AfiI	CCNNNNNNNGG	3 cut(s)	50, 51, 395
AflIII	ACRYGT	1 cut(s)	120
AgsI	TTSAA	2 cut(s)	445, 524
AjiI	CACGTC	1 cut(s)	121
AjnI	CCWGG	1 cut(s)	394
AluBI	AGCT	4 cut(s)	225, 412, 491, 562
AluI	AGCT	4 cut(s)	225, 412, 491, 562
Alw21I	GWGCWC	3 cut(s)	99, 227, 414
Alw26I	GTCTC	1 cut(s)	128
AlwI	GGATC	3 cut(s)	176, 181, 357
AlwNI	CAGNNNCTG	1 cut(s)	494
Ama87I	CYCGRG	1 cut(s)	415
ApeKI	GCWGC	4 cut(s)	167, 211, 491, 494
AspS9I	GGNCC	3 cut(s)	386, 398, 485
AsuC2I	CCSGG	1 cut(s)	483
AsuHPI	GGTGA	1 cut(s)	455
AvaI	CYCGRG	1 cut(s)	415
AvaII	GGWCC	3 cut(s)	386, 398, 485
AxyI	CCTNAGG	1 cut(s)	501
BanI	GGYRCC	1 cut(s)	319
BanII	GRGCYC	2 cut(s)	227, 414
Bbv12I	GWGCWC	3 cut(s)	99, 227, 414
BbvCI	CCTCAGC	1 cut(s)	267
BbvI	GCAGC	4 cut(s)	154, 198, 478, 481
BccI	CCATC	2 cut(s)	154, 542
BceAI	ACGGC	1 cut(s)	139
BciT130I	CCWGG	1 cut(s)	396
BcnI	CCSGG	1 cut(s)	483
BcoDI	GTCTC	1 cut(s)	128
BfaI	CTAG	1 cut(s)	563
BglI	GCCNNNNNGGC	1 cut(s)	503
BglII	AGATCT	1 cut(s)	301
BisI	GCNGC	4 cut(s)	168, 212, 492, 495
BlsI	GCNGC	4 cut(s)	169, 213, 493, 496
Bme1390I	CCNGG	2 cut(s)	396, 483
Bme18I	GGWCC	3 cut(s)	386, 398, 485
BmeT110I	CYCGRG	1 cut(s)	415
BmgBI	CACGTC	1 cut(s)	121
BmgT120I	GGNCC	3 cut(s)	386, 398, 485
BmiI	GGNNCC	3 cut(s)	144, 321, 486
BmrFI	CCNGG	2 cut(s)	396, 483
BmsI	GCATC	1 cut(s)	198
BplI	GAGNNNNNCTC	6 cut(s)	86, 118, 209, 241, 214, 246
Bpu10I	CCTNAGC	1 cut(s)	267
BpuMI	CCSGG	1 cut(s)	483
Bsa29I	ATCGAT	1 cut(s)	546
BsaXI	ACNNNNNCTCC	2 cut(s)	127, 157
Bsc4I	CCNNNNNNNGG	3 cut(s)	50, 51, 395
Bse1I	ACTGG	1 cut(s)	290
Bse21I	CCTNAGG	1 cut(s)	501
BseBI	CCWGG	1 cut(s)	396
BseCI	ATCGAT	1 cut(s)	546
BseGI	GGATG	1 cut(s)	426
BseLI	CCNNNNNNNGG	3 cut(s)	50, 51, 395
BseMII	CTCAG	5 cut(s)	123, 247, 258, 399, 492
BseNI	ACTGG	1 cut(s)	290
BseRI	GAGGAG	3 cut(s)	233, 259, 450
BseXI	GCAGC	4 cut(s)	154, 198, 478, 481
BseYI	CCCAGC	1 cut(s)	50
Bsh1236I	CGCG	1 cut(s)	128
BshNI	GGYRCC	1 cut(s)	319
BshVI	ATCGAT	1 cut(s)	546
BsiHKAI	GWGCWC	3 cut(s)	99, 227, 414
BsiHKCI	CYCGRG	1 cut(s)	415
BsiSI	CCGG	2 cut(s)	215, 482
BslFI	GGGAC	3 cut(s)	26, 498, 566
BslI	CCNNNNNNNGG	3 cut(s)	50, 51, 395
BsmAI	GTCTC	1 cut(s)	128
BsmFI	GGGAC	3 cut(s)	26, 498, 566
BsoBI	CYCGRG	1 cut(s)	415
Bsp1286I	GDGCHC	3 cut(s)	99, 227, 414
Bsp143I	GATC	5 cut(s)	159, 173, 181, 301, 349
Bsp68I	TCGCGA	1 cut(s)	128
BspACI	CCGC	6 cut(s)	48, 61, 88, 152, 194, 228
BspCNI	CTCAG	5 cut(s)	124, 246, 259, 400, 493
BspDI	ATCGAT	1 cut(s)	546
BspFNI	CGCG	1 cut(s)	128
BspLI	GGNNCC	3 cut(s)	144, 321, 486
BspPI	GGATC	3 cut(s)	176, 181, 357
BspT107I	GGYRCC	1 cut(s)	319
BsrBI	CCGCTC	1 cut(s)	230
BsrI	ACTGG	1 cut(s)	290
BssMI	GATC	5 cut(s)	159, 173, 181, 301, 349
Bst2UI	CCWGG	1 cut(s)	396
Bst6I	CTCTTC	2 cut(s)	27, 329
BstC8I	GCNNGC	1 cut(s)	324
BstDEI	CTNAG	5 cut(s)	132, 233, 267, 408, 501
BstF5I	GGATG	1 cut(s)	426
BstFNI	CGCG	1 cut(s)	128
BstKTI	GATC	5 cut(s)	162, 176, 184, 304, 352
BstMAI	GTCTC	1 cut(s)	128
BstMBI	GATC	5 cut(s)	159, 173, 181, 301, 349
BstMWI	GCNNNNNNNGC	2 cut(s)	454, 503
BstNI	CCWGG	1 cut(s)	396
BstSCI	CCNGG	2 cut(s)	394, 481
BstUI	CGCG	1 cut(s)	128
BstV1I	GCAGC	4 cut(s)	154, 198, 478, 481
BstX2I	RGATCY	1 cut(s)	301
BstXI	CCANNNNNNTGG	1 cut(s)	548
BstYI	RGATCY	1 cut(s)	301
Bsu15I	ATCGAT	1 cut(s)	546
Bsu36I	CCTNAGG	1 cut(s)	501
BsuTUI	ATCGAT	1 cut(s)	546
BtrI	CACGTC	1 cut(s)	121
BtsCI	GGATG	1 cut(s)	426
BtuMI	TCGCGA	1 cut(s)	128
Cac8I	GCNNGC	1 cut(s)	324
CaiI	CAGNNNCTG	1 cut(s)	494
Cfr13I	GGNCC	3 cut(s)	386, 398, 485
ClaI	ATCGAT	1 cut(s)	546
CsiI	ACCWGGT	1 cut(s)	394
Csp6I	GTAC	1 cut(s)	568
CviAII	CATG	2 cut(s)	263, 528
CviJI	RGCY	8 cut(s)	143, 225, 364, 412, 472, 491, 506, 562
CviKI_1	RGCY	8 cut(s)	143, 225, 364, 412, 472, 491, 506, 562
CviQI	GTAC	1 cut(s)	568
DdeI	CTNAG	5 cut(s)	132, 233, 267, 408, 501
DpnI	GATC	5 cut(s)	161, 175, 183, 303, 351
DpnII	GATC	5 cut(s)	159, 173, 181, 301, 349
DrdI	GACNNNNNNGTC	1 cut(s)	38
DseDI	GACNNNNNNGTC	1 cut(s)	38
Eam1104I	CTCTTC	2 cut(s)	27, 329
EarI	CTCTTC	2 cut(s)	27, 329
EciI	GGCGGA	2 cut(s)	141, 183
Ecl136II	GAGCTC	2 cut(s)	225, 412
Eco24I	GRGCYC	2 cut(s)	227, 414
Eco47I	GGWCC	3 cut(s)	386, 398, 485
Eco53kI	GAGCTC	2 cut(s)	225, 412
Eco81I	CCTNAGG	1 cut(s)	501
Eco88I	CYCGRG	1 cut(s)	415
EcoICRI	GAGCTC	2 cut(s)	225, 412
EcoRII	CCWGG	1 cut(s)	394
EcoT38I	GRGCYC	2 cut(s)	227, 414
FaeI	CATG	2 cut(s)	266, 531
FaiI	YATR	4 cut(s)	264, 450, 529, 543
FaqI	GGGAC	3 cut(s)	26, 498, 566
FatI	CATG	2 cut(s)	262, 527
FauI	CCCGC	1 cut(s)	68
FblI	GTMKAC	1 cut(s)	273
Fnu4HI	GCNGC	4 cut(s)	168, 212, 492, 495
FokI	GGATG	1 cut(s)	433
FriOI	GRGCYC	2 cut(s)	227, 414
Fsp4HI	GCNGC	4 cut(s)	168, 212, 492, 495
FspBI	CTAG	1 cut(s)	563
GluI	GCNGC	4 cut(s)	168, 212, 492, 495
GsaI	CCCAGC	1 cut(s)	54
HapII	CCGG	2 cut(s)	215, 482
Hin1II	CATG	2 cut(s)	266, 531
HincII	GTYRAC	1 cut(s)	57
HindII	GTYRAC	1 cut(s)	57
HinfI	GANTC	4 cut(s)	35, 101, 187, 247
HpaII	CCGG	2 cut(s)	215, 482
HphI	GGTGA	1 cut(s)	455
Hpy166II	GTNNAC	2 cut(s)	57, 274
Hpy188I	TCNGA	4 cut(s)	178, 186, 205, 236
Hpy188III	TCNNGA	5 cut(s)	26, 127, 251, 353, 415
Hpy8I	GTNNAC	2 cut(s)	57, 274
Hpy99I	CGWCG	4 cut(s)	74, 77, 110, 160
HpyAV	CCTTC	6 cut(s)	25, 76, 283, 340, 375, 483
HpyCH4IV	ACGT	2 cut(s)	120, 570
HpyCH4V	TGCA	2 cut(s)	299, 382
HpyF10VI	GCNNNNNNNGC	2 cut(s)	454, 503
HpyF3I	CTNAG	5 cut(s)	132, 233, 267, 408, 501
HpySE526I	ACGT	2 cut(s)	120, 570
Hsp92II	CATG	2 cut(s)	266, 531
Kzo9I	GATC	5 cut(s)	159, 173, 181, 301, 349
LmnI	GCTCC	2 cut(s)	148, 230
Lsp1109I	GCAGC	4 cut(s)	154, 198, 478, 481
LweI	GCATC	1 cut(s)	198
MabI	ACCWGGT	1 cut(s)	394
MaeI	CTAG	1 cut(s)	563
MaeII	ACGT	2 cut(s)	120, 570
MalI	GATC	5 cut(s)	161, 175, 183, 303, 351
MbiI	CCGCTC	1 cut(s)	230
MboI	GATC	5 cut(s)	159, 173, 181, 301, 349
MboII	GAAGA	5 cut(s)	14, 154, 182, 346, 355
MflI	RGATCY	1 cut(s)	301
MhlI	GDGCHC	3 cut(s)	99, 227, 414
MluCI	AATT	1 cut(s)	440
MlyI	GAGTC	3 cut(s)	29, 95, 256
MslI	CAYNNNNRTG	1 cut(s)	546
MspA1I	CMGCKG	2 cut(s)	50, 491
MspI	CCGG	2 cut(s)	215, 482
MspR9I	CCNGG	2 cut(s)	396, 483
MvaI	CCWGG	1 cut(s)	396
MvnI	CGCG	1 cut(s)	128
MwoI	GCNNNNNNNGC	2 cut(s)	454, 503
NciI	CCSGG	1 cut(s)	483
NdeII	GATC	5 cut(s)	159, 173, 181, 301, 349
NlaIII	CATG	2 cut(s)	266, 531
NlaIV	GGNNCC	3 cut(s)	144, 321, 486
NruI	TCGCGA	1 cut(s)	128
PaeR7I	CTCGAG	1 cut(s)	415
PcsI	WCGNNNNNNNCGW	3 cut(s)	105, 182, 552
PfeI	GAWTC	1 cut(s)	187
PflFI	GACNNNGTC	2 cut(s)	38, 104
PflMI	CCANNNNNTGG	1 cut(s)	395
PkrI	GCNGC	4 cut(s)	169, 213, 493, 496
PleI	GAGTC	3 cut(s)	29, 95, 255
PpsI	GAGTC	3 cut(s)	29, 95, 255
Psp124BI	GAGCTC	2 cut(s)	227, 414
Psp6I	CCWGG	1 cut(s)	394
PspFI	CCCAGC	1 cut(s)	50
PspGI	CCWGG	1 cut(s)	394
PspN4I	GGNNCC	3 cut(s)	144, 321, 486
PspPI	GGNCC	3 cut(s)	386, 398, 485
PstNI	CAGNNNCTG	1 cut(s)	494
PsuI	RGATCY	1 cut(s)	301
PsyI	GACNNNGTC	2 cut(s)	38, 104
PvuII	CAGCTG	1 cut(s)	491
RruI	TCGCGA	1 cut(s)	128
RsaI	GTAC	1 cut(s)	569
RsaNI	GTAC	1 cut(s)	568
RseI	CAYNNNNRTG	1 cut(s)	546
SacI	GAGCTC	2 cut(s)	227, 414
SatI	GCNGC	4 cut(s)	168, 212, 492, 495
Sau3AI	GATC	5 cut(s)	159, 173, 181, 301, 349
Sau96I	GGNCC	3 cut(s)	386, 398, 485
SchI	GAGTC	3 cut(s)	29, 95, 256
ScrFI	CCNGG	2 cut(s)	396, 483
SduI	GDGCHC	3 cut(s)	99, 227, 414
SexAI	ACCWGGT	1 cut(s)	394
SfaNI	GCATC	1 cut(s)	198
Sfr274I	CTCGAG	1 cut(s)	415
SinI	GGWCC	3 cut(s)	386, 398, 485
SlaI	CTCGAG	1 cut(s)	415
SmiMI	CAYNNNNRTG	1 cut(s)	546
SmlI	CTYRAG	1 cut(s)	415
SmoI	CTYRAG	1 cut(s)	415
Sse9I	AATT	1 cut(s)	440
SsiI	CCGC	6 cut(s)	48, 61, 88, 152, 194, 228
SspMI	CTAG	1 cut(s)	563
SstI	GAGCTC	2 cut(s)	227, 414
StyD4I	CCNGG	2 cut(s)	394, 481
TaiI	ACGT	2 cut(s)	123, 573
TaqI	TCGA	5 cut(s)	69, 114, 158, 416, 546
TasI	AATT	1 cut(s)	440
TfiI	GAWTC	1 cut(s)	187
TseI	GCWGC	4 cut(s)	167, 211, 491, 494
TspDTI	ATGAA	1 cut(s)	251
TspGWI	ACGGA	3 cut(s)	28, 94, 189
Tth111I	GACNNNGTC	2 cut(s)	38, 104
Van91I	CCANNNNNTGG	1 cut(s)	395
VpaK11BI	GGWCC	3 cut(s)	386, 398, 485
XhoI	CTCGAG	1 cut(s)	415
XmiI	GTMKAC	1 cut(s)	273
XspI	CTAG	1 cut(s)	563

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.