Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr7

Orthogroup ID

OG0002423

Physical Location & Seq

Genomic Coordinates Forward (+)

22137435 .. 22139046

Gene Structure 1612 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom07g19900.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 597 bp

ATGGAGGGTTTGGCGGGTCCGATCGATCCGATTTTGCCGCCTCCGTCGGAGATGCTGCCTGAGGAGGGCTTTGCTCTCAGAGAATGGAGGAGGCAGAATGCGATTCATCTCGAGGAGAAGGAGAAGAGAGAAAAGGAGTTGTTGGTTCAAATAATTGAGGAAGCAGATGAATTCAAGGTGGGATTCTACCAGAAGAGGAAGATCTCTACTGAAAATAACAAGGCTGCTAACAGGGAAAGGGAGAAGCTGTTCCTGGCTAATCAAGAGAAGTTTCATGCTGAGGTAGACAAGAACTACTGGAAGGCAATTGCGGACCTCATTCCCAATGAGGTGCCAGCTATAGAGAAGAAGAGAGGGAAGAAGGATACGGAAAAGAAGCCATCCATTCTCGTTGTCCAAGGTCCAAAGCCTGGAAAGCCAACCGAGCTTTCAAGGATGAGGCAGATACTTTTAAAATTGAAGCATAATACACCTCCCCACCTGAAGCCTTCACCTCCTGCCCCAGCTCCCAGCAAGGATGCAAAACCGAGTACTTCTGCTCCCCAGAAGGCTGCAGTTGTGGCGGCTACCCCCGAGGCTGTAGTAGCTGCTTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0006897 GO:0006898 GO:0008150 GO:0009504 GO:0009507 GO:0009524 GO:0009526 GO:0009536 GO:0009941 GO:0012506 GO:0016020 GO:0016192 GO:0030117 GO:0030118 GO:0030120 GO:0030125 GO:0030135 GO:0030136 GO:0030276 GO:0030659 GO:0030662 GO:0030665 GO:0031090 GO:0031410 GO:0031967 GO:0031975 GO:0031982 GO:0032050 GO:0032991 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048475 GO:0051179 GO:0051234 GO:0071944 GO:0072583 GO:0097708 GO:0098588 GO:0098657 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04142 ko04144 ko04721 ko04961 ko05016 ko05100 map04142 map04144 map04721 map04961 map05016 map05100

Pfam Domains

Protein Families

Clathrin_lg_ch

Protein Analysis

199

Amino Acids

22.17

Weight (kDa)

9.35

Isoelectric Point (pI)

53.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002423)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40060
fragaria_vesca	FvH4_4g08020 FvH4_7g24260
malus_domestica	MD00G1024200.v1.1 MD00G1047100.v1.1 MD00G1047900.v1.1 MD00G1048400.v1.1 MD00G1062700.v1.1 MD01G1132200.v1.1 MD01G1150700.v1.1 MD01G1152000.v1.1 MD05G1333900.v1.1 MD07G1216800.v1.1 MD07G1219900.v1.1
prunus_persica	Prupe.2G248500_v2.0.a1
pyrus_communis	pycom01g16830 pycom01g16850 pycom01g16880 pycom07g19900 pycom11g19450
rosa_chinensis	RchiOBHm_Chr1g0369851
rosa_laevigata	RLG00000027088 RLG00000027098
rosa_multiflora	Rmu_co8474619.1_g000001 Rmu_sc0008140.1_g000010
rosa_roxburghii	Rroxscaffold_3G00232620 Rroxscaffold_4G00286940 Rroxscaffold_4G00287110 Rroxscaffold_4G00322920
rosa_rugosa	Rorug01G0352700
rosa_samantha	Rh1AG194100 Rh1AG361200 Rh1BG178100 Rh1BG324900 Rh1CG179000 Rh1CG338100 Rh1DG087000 Rh1DG207800 Rh1DG355300
rosa_wichuraiana	Rw0G015470 Rw1G031810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	331
AccB7I	CCANNNNNTGG	1 cut(s)	410
AccI	GTMKAC	1 cut(s)	285
AciI	CCGC	4 cut(s)	14, 38, 311, 563
AclWI	GGATC	1 cut(s)	20
AcsI	RAATTY	1 cut(s)	170
AcuI	CTGAAG	1 cut(s)	503
AfaI	GTAC	1 cut(s)	532
AfiI	CCNNNNNNNGG	2 cut(s)	65, 410
AgsI	TTSAA	4 cut(s)	149, 175, 432, 460
AjnI	CCWGG	2 cut(s)	252, 409
AjuI	GAANNNNNNNTTGG	2 cut(s)	412, 444
AloI	GAACNNNNNNTCC	2 cut(s)	233, 265
AluBI	AGCT	5 cut(s)	247, 338, 427, 506, 587
AluI	AGCT	5 cut(s)	247, 338, 427, 506, 587
AlwI	GGATC	1 cut(s)	20
Ama87I	CYCGRG	2 cut(s)	110, 572
ApeKI	GCWGC	4 cut(s)	55, 224, 551, 587
ApoI	RAATTY	1 cut(s)	170
Asp700I	GAANNNNTTC	1 cut(s)	248
AspS9I	GGNCC	3 cut(s)	17, 313, 401
AsuHPI	GGTGA	1 cut(s)	483
AvaI	CYCGRG	2 cut(s)	110, 572
AvaII	GGWCC	3 cut(s)	17, 313, 401
AxyI	CCTNAGG	1 cut(s)	60
BanI	GGYRCC	1 cut(s)	331
BbvCI	CCTCAGC	1 cut(s)	279
BbvI	GCAGC	4 cut(s)	42, 211, 538, 574
BccI	CCATC	1 cut(s)	388
BciT130I	CCWGG	2 cut(s)	254, 411
BciVI	GTATCC	1 cut(s)	358
BfmI	CTRYAG	3 cut(s)	339, 552, 579
BfuI	GTATCC	1 cut(s)	358
BglII	AGATCT	1 cut(s)	201
BisI	GCNGC	6 cut(s)	38, 56, 225, 552, 564, 588
BlsI	GCNGC	6 cut(s)	39, 57, 226, 553, 565, 589
BmcAI	AGTACT	1 cut(s)	532
Bme1390I	CCNGG	2 cut(s)	254, 411
Bme18I	GGWCC	3 cut(s)	17, 313, 401
BmeT110I	CYCGRG	2 cut(s)	110, 572
BmgT120I	GGNCC	3 cut(s)	17, 313, 401
BmiI	GGNNCC	2 cut(s)	18, 333
BmrFI	CCNGG	2 cut(s)	254, 411
BmsI	GCATC	2 cut(s)	42, 508
Bpu10I	CCTNAGC	1 cut(s)	279
Bsa29I	ATCGAT	1 cut(s)	24
BsaJI	CCNNGG	2 cut(s)	397, 573
BsaXI	ACNNNNNCTCC	4 cut(s)	233, 263, 523, 553
Bsc4I	CCNNNNNNNGG	2 cut(s)	65, 410
Bse1I	ACTGG	1 cut(s)	302
Bse21I	CCTNAGG	1 cut(s)	60
BseBI	CCWGG	2 cut(s)	254, 411
BseCI	ATCGAT	1 cut(s)	24
BseDI	CCNNGG	2 cut(s)	397, 573
BseGI	GGATG	3 cut(s)	380, 441, 523
BseLI	CCNNNNNNNGG	2 cut(s)	65, 410
BseMII	CTCAG	3 cut(s)	51, 91, 270
BseNI	ACTGG	1 cut(s)	302
BseRI	GAGGAG	3 cut(s)	77, 103, 128
BseXI	GCAGC	4 cut(s)	42, 211, 538, 574
BseYI	CCCAGC	2 cut(s)	502, 509
Bsh1285I	CGRYCG	1 cut(s)	24
BshNI	GGYRCC	1 cut(s)	331
BshVI	ATCGAT	1 cut(s)	24
BsiEI	CGRYCG	1 cut(s)	24
BsiHKCI	CYCGRG	2 cut(s)	110, 572
BslI	CCNNNNNNNGG	2 cut(s)	65, 410
BsmI	GAATGC	1 cut(s)	103
BsoBI	CYCGRG	2 cut(s)	110, 572
Bsp143I	GATC	3 cut(s)	21, 25, 201
BspACI	CCGC	4 cut(s)	14, 38, 311, 563
BspCNI	CTCAG	3 cut(s)	52, 90, 271
BspDI	ATCGAT	1 cut(s)	24
BspLI	GGNNCC	2 cut(s)	18, 333
BspMAI	CTGCAG	1 cut(s)	556
BspPI	GGATC	1 cut(s)	20
BspT107I	GGYRCC	1 cut(s)	331
BsrI	ACTGG	1 cut(s)	302
BssECI	CCNNGG	2 cut(s)	397, 573
BssMI	GATC	3 cut(s)	21, 25, 201
BssT1I	CCWWGG	1 cut(s)	397
Bst2UI	CCWGG	2 cut(s)	254, 411
Bst6I	CTCTTC	3 cut(s)	119, 188, 344
BstC8I	GCNNGC	1 cut(s)	336
BstDEI	CTNAG	3 cut(s)	60, 77, 279
BstF5I	GGATG	3 cut(s)	380, 441, 523
BstKTI	GATC	3 cut(s)	24, 28, 204
BstMBI	GATC	3 cut(s)	21, 25, 201
BstMCI	CGRYCG	1 cut(s)	24
BstMWI	GCNNNNNNNGC	4 cut(s)	415, 424, 560, 584
BstNI	CCWGG	2 cut(s)	254, 411
BstSCI	CCNGG	2 cut(s)	252, 409
BstSFI	CTRYAG	3 cut(s)	339, 552, 579
BstV1I	GCAGC	4 cut(s)	42, 211, 538, 574
BstX2I	RGATCY	1 cut(s)	201
BstYI	RGATCY	1 cut(s)	201
Bsu15I	ATCGAT	1 cut(s)	24
Bsu36I	CCTNAGG	1 cut(s)	60
BsuI	GTATCC	1 cut(s)	358
BsuTUI	ATCGAT	1 cut(s)	24
BtsCI	GGATG	3 cut(s)	380, 441, 523
Cac8I	GCNNGC	1 cut(s)	336
Cfr13I	GGNCC	3 cut(s)	17, 313, 401
ClaI	ATCGAT	1 cut(s)	24
Csp6I	GTAC	1 cut(s)	531
CviAII	CATG	1 cut(s)	275
CviQI	GTAC	1 cut(s)	531
DdeI	CTNAG	3 cut(s)	60, 77, 279
DpnI	GATC	3 cut(s)	23, 27, 203
DpnII	GATC	3 cut(s)	21, 25, 201
DraI	TTTAAA	1 cut(s)	453
Eam1104I	CTCTTC	3 cut(s)	119, 188, 344
EarI	CTCTTC	3 cut(s)	119, 188, 344
Eco130I	CCWWGG	1 cut(s)	397
Eco47I	GGWCC	3 cut(s)	17, 313, 401
Eco57I	CTGAAG	1 cut(s)	503
Eco81I	CCTNAGG	1 cut(s)	60
Eco88I	CYCGRG	2 cut(s)	110, 572
EcoRI	GAATTC	1 cut(s)	170
EcoRII	CCWGG	2 cut(s)	252, 409
EcoT14I	CCWWGG	1 cut(s)	397
ErhI	CCWWGG	1 cut(s)	397
FaeI	CATG	1 cut(s)	278
FaiI	YATR	3 cut(s)	276, 341, 465
FatI	CATG	1 cut(s)	274
FauI	CCCGC	1 cut(s)	7
FblI	GTMKAC	1 cut(s)	285
Fnu4HI	GCNGC	6 cut(s)	38, 56, 225, 552, 564, 588
FokI	GGATG	3 cut(s)	367, 448, 530
Fsp4HI	GCNGC	6 cut(s)	38, 56, 225, 552, 564, 588
GluI	GCNGC	6 cut(s)	38, 56, 225, 552, 564, 588
GsaI	CCCAGC	2 cut(s)	506, 513
Hin1II	CATG	1 cut(s)	278
HinfI	GANTC	2 cut(s)	103, 183
HphI	GGTGA	1 cut(s)	483
Hpy166II	GTNNAC	1 cut(s)	286
Hpy188I	TCNGA	4 cut(s)	21, 30, 49, 80
Hpy188III	TCNNGA	2 cut(s)	110, 263
Hpy8I	GTNNAC	1 cut(s)	286
Hpy99I	CGWCG	1 cut(s)	49
HpyAV	CCTTC	5 cut(s)	112, 295, 355, 498, 541
HpyCH4V	TGCA	2 cut(s)	521, 554
HpyF10VI	GCNNNNNNNGC	4 cut(s)	415, 424, 560, 584
HpyF3I	CTNAG	3 cut(s)	60, 77, 279
Hsp92II	CATG	1 cut(s)	278
Kzo9I	GATC	3 cut(s)	21, 25, 201
LmnI	GCTCC	2 cut(s)	511, 544
Lsp1109I	GCAGC	4 cut(s)	42, 211, 538, 574
LweI	GCATC	2 cut(s)	42, 508
MalI	GATC	3 cut(s)	23, 27, 203
MboI	GATC	3 cut(s)	21, 25, 201
MboII	GAAGA	6 cut(s)	136, 205, 211, 358, 361, 370
MfeI	CAATTG	1 cut(s)	306
MflI	RGATCY	1 cut(s)	201
MluCI	AATT	4 cut(s)	153, 170, 306, 455
MmeI	TCCRAC	1 cut(s)	27
MroXI	GAANNNNTTC	1 cut(s)	248
MseI	TTAA	1 cut(s)	452
MspR9I	CCNGG	2 cut(s)	254, 411
MunI	CAATTG	1 cut(s)	306
Mva1269I	GAATGC	1 cut(s)	103
MvaI	CCWGG	2 cut(s)	254, 411
MwoI	GCNNNNNNNGC	4 cut(s)	415, 424, 560, 584
NdeII	GATC	3 cut(s)	21, 25, 201
NlaIII	CATG	1 cut(s)	278
NlaIV	GGNNCC	2 cut(s)	18, 333
PaeR7I	CTCGAG	1 cut(s)	110
PctI	GAATGC	1 cut(s)	103
PdmI	GAANNNNTTC	1 cut(s)	248
PfeI	GAWTC	2 cut(s)	103, 183
PflMI	CCANNNNNTGG	1 cut(s)	410
PkrI	GCNGC	6 cut(s)	39, 57, 226, 553, 565, 589
Ple19I	CGATCG	1 cut(s)	24
Psp6I	CCWGG	2 cut(s)	252, 409
PspFI	CCCAGC	2 cut(s)	502, 509
PspGI	CCWGG	2 cut(s)	252, 409
PspN4I	GGNNCC	2 cut(s)	18, 333
PspPI	GGNCC	3 cut(s)	17, 313, 401
PstI	CTGCAG	1 cut(s)	556
PsuI	RGATCY	1 cut(s)	201
PvuI	CGATCG	1 cut(s)	24
RsaI	GTAC	1 cut(s)	532
RsaNI	GTAC	1 cut(s)	531
SaqAI	TTAA	1 cut(s)	452
SatI	GCNGC	6 cut(s)	38, 56, 225, 552, 564, 588
Sau3AI	GATC	3 cut(s)	21, 25, 201
Sau96I	GGNCC	3 cut(s)	17, 313, 401
ScaI	AGTACT	1 cut(s)	532
ScrFI	CCNGG	2 cut(s)	254, 411
SfaNI	GCATC	2 cut(s)	42, 508
SfcI	CTRYAG	3 cut(s)	339, 552, 579
Sfr274I	CTCGAG	1 cut(s)	110
SinI	GGWCC	3 cut(s)	17, 313, 401
SlaI	CTCGAG	1 cut(s)	110
SmlI	CTYRAG	1 cut(s)	110
SmoI	CTYRAG	1 cut(s)	110
Sse9I	AATT	4 cut(s)	153, 170, 306, 455
SsiI	CCGC	4 cut(s)	14, 38, 311, 563
StyD4I	CCNGG	2 cut(s)	252, 409
StyI	CCWWGG	1 cut(s)	397
TaqI	TCGA	2 cut(s)	24, 111
TasI	AATT	4 cut(s)	153, 170, 306, 455
TatI	WGTACW	1 cut(s)	530
TauI	GCSGC	2 cut(s)	40, 566
TfiI	GAWTC	2 cut(s)	103, 183
Tru1I	TTAA	1 cut(s)	452
Tru9I	TTAA	1 cut(s)	452
TseI	GCWGC	4 cut(s)	55, 224, 551, 587
TspDTI	ATGAA	3 cut(s)	95, 183, 263
TspGWI	ACGGA	2 cut(s)	33, 383
Van91I	CCANNNNNTGG	1 cut(s)	410
VpaK11BI	GGWCC	3 cut(s)	17, 313, 401
XapI	RAATTY	1 cut(s)	170
XhoI	CTCGAG	1 cut(s)	110
XmiI	GTMKAC	1 cut(s)	285
XmnI	GAANNNNTTC	1 cut(s)	248
ZrmI	AGTACT	1 cut(s)	532

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.