Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000004

Orthogroup ID

OG0002423

Physical Location & Seq

Genomic Coordinates Reverse (-)

53530413 .. 53533808

Gene Structure 3396 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_4G00322920.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 276 bp

ATGTTTGTTGCCAGTCAAGAGAAGTTTCATGCTGAGGTAGACAAGAACTACTGGAAGGCAGTTGCAGGTCTCATTCCCAATGAGGTGCCGGCTATAGAGAAGAAGAGAGGGAAGAAGGATCAAGAAAAGAAGCCCTCCATTGTCGTTGTGCAAGGTCCAAAACCTGGTAAGCCAACTGAACTCTCGAGGATGAGGCAGATACTTCTAAAATTGAAGCATAATACTCCTCCTCACCGAAAGCCTTCGCTACCGGCTGGCACCAGCCGCTGCCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0006897 GO:0006898 GO:0008150 GO:0009504 GO:0009507 GO:0009524 GO:0009526 GO:0009536 GO:0009941 GO:0012506 GO:0016020 GO:0016192 GO:0030117 GO:0030118 GO:0030120 GO:0030125 GO:0030135 GO:0030136 GO:0030276 GO:0030659 GO:0030662 GO:0030665 GO:0031090 GO:0031410 GO:0031967 GO:0031975 GO:0031982 GO:0032050 GO:0032991 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048475 GO:0051179 GO:0051234 GO:0071944 GO:0072583 GO:0097708 GO:0098588 GO:0098657 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04142 ko04144 ko04721 ko04961 ko05016 ko05100 map04142 map04144 map04721 map04961 map05016 map05100

Pfam Domains

Protein Families

Clathrin_lg_ch

Protein Analysis

91

Amino Acids

10.22

Weight (kDa)

10.17

Isoelectric Point (pI)

38.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002423)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40060
fragaria_vesca	FvH4_4g08020 FvH4_7g24260
malus_domestica	MD00G1024200.v1.1 MD00G1047100.v1.1 MD00G1047900.v1.1 MD00G1048400.v1.1 MD00G1062700.v1.1 MD01G1132200.v1.1 MD01G1150700.v1.1 MD01G1152000.v1.1 MD05G1333900.v1.1 MD07G1216800.v1.1 MD07G1219900.v1.1
prunus_persica	Prupe.2G248500_v2.0.a1
pyrus_communis	pycom01g16830 pycom01g16850 pycom01g16880 pycom07g19900 pycom11g19450
rosa_chinensis	RchiOBHm_Chr1g0369851
rosa_laevigata	RLG00000027088 RLG00000027098
rosa_multiflora	Rmu_co8474619.1_g000001 Rmu_sc0008140.1_g000010
rosa_roxburghii	Rroxscaffold_3G00232620 Rroxscaffold_4G00286940 Rroxscaffold_4G00287110 Rroxscaffold_4G00322920
rosa_rugosa	Rorug01G0352700
rosa_samantha	Rh1AG194100 Rh1AG361200 Rh1BG178100 Rh1BG324900 Rh1CG179000 Rh1CG338100 Rh1DG087000 Rh1DG207800 Rh1DG355300
rosa_wichuraiana	Rw0G015470 Rw1G031810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	56
AccB1I	GGYRCC	2 cut(s)	85, 257
AccB7I	CCANNNNNTGG	1 cut(s)	164
AccI	GTMKAC	1 cut(s)	39
AciI	CCGC	1 cut(s)	265
AclWI	GGATC	1 cut(s)	126
AfiI	CCNNNNNNNGG	1 cut(s)	164
AgsI	TTSAA	1 cut(s)	214
AjnI	CCWGG	1 cut(s)	163
Alw26I	GTCTC	1 cut(s)	74
AlwI	GGATC	1 cut(s)	126
AlwNI	CAGNNNCTG	1 cut(s)	267
Ama87I	CYCGRG	1 cut(s)	184
ApeKI	GCWGC	1 cut(s)	267
Asp700I	GAANNNNTTC	1 cut(s)	241
AspS9I	GGNCC	1 cut(s)	155
AsuHPI	GGTGA	1 cut(s)	224
AvaI	CYCGRG	1 cut(s)	184
AvaII	GGWCC	1 cut(s)	155
BanI	GGYRCC	2 cut(s)	85, 257
BbvCI	CCTCAGC	1 cut(s)	33
BbvI	GCAGC	1 cut(s)	254
BciT130I	CCWGG	1 cut(s)	165
BcoDI	GTCTC	1 cut(s)	74
BfmI	CTRYAG	1 cut(s)	93
BfuAI	ACCTGC	1 cut(s)	56
BisI	GCNGC	2 cut(s)	265, 268
BlsI	GCNGC	2 cut(s)	266, 269
Bme1390I	CCNGG	1 cut(s)	165
Bme18I	GGWCC	1 cut(s)	155
BmeT110I	CYCGRG	1 cut(s)	184
BmgT120I	GGNCC	1 cut(s)	155
BmiI	GGNNCC	2 cut(s)	87, 259
BmrFI	CCNGG	1 cut(s)	165
Bpu10I	CCTNAGC	1 cut(s)	33
BsaI	GGTCTC	1 cut(s)	74
Bsc4I	CCNNNNNNNGG	1 cut(s)	164
Bse118I	RCCGGY	2 cut(s)	88, 250
Bse1I	ACTGG	2 cut(s)	12, 56
BseBI	CCWGG	1 cut(s)	165
BseGI	GGATG	1 cut(s)	195
BseLI	CCNNNNNNNGG	1 cut(s)	164
BseMII	CTCAG	1 cut(s)	24
BseNI	ACTGG	2 cut(s)	12, 56
BseRI	GAGGAG	2 cut(s)	216, 219
BseXI	GCAGC	1 cut(s)	254
BshNI	GGYRCC	2 cut(s)	85, 257
BsiHKCI	CYCGRG	1 cut(s)	184
BsiSI	CCGG	2 cut(s)	89, 251
BslI	CCNNNNNNNGG	1 cut(s)	164
BsmAI	GTCTC	1 cut(s)	74
Bso31I	GGTCTC	1 cut(s)	74
BsoBI	CYCGRG	1 cut(s)	184
Bsp143I	GATC	1 cut(s)	118
BspACI	CCGC	1 cut(s)	265
BspCNI	CTCAG	1 cut(s)	25
BspLI	GGNNCC	2 cut(s)	87, 259
BspMI	ACCTGC	1 cut(s)	56
BspPI	GGATC	1 cut(s)	126
BspT107I	GGYRCC	2 cut(s)	85, 257
BspTNI	GGTCTC	1 cut(s)	74
BsrFI	RCCGGY	2 cut(s)	88, 250
BsrI	ACTGG	2 cut(s)	12, 56
BssAI	RCCGGY	2 cut(s)	88, 250
BssMI	GATC	1 cut(s)	118
Bst2UI	CCWGG	1 cut(s)	165
Bst6I	CTCTTC	1 cut(s)	98
BstC8I	GCNNGC	2 cut(s)	90, 256
BstDEI	CTNAG	1 cut(s)	33
BstF5I	GGATG	1 cut(s)	195
BstKTI	GATC	1 cut(s)	121
BstMAI	GTCTC	1 cut(s)	74
BstMBI	GATC	1 cut(s)	118
BstMWI	GCNNNNNNNGC	1 cut(s)	264
BstNI	CCWGG	1 cut(s)	165
BstSCI	CCNGG	1 cut(s)	163
BstSFI	CTRYAG	1 cut(s)	93
BstV1I	GCAGC	1 cut(s)	254
BtsCI	GGATG	1 cut(s)	195
BveI	ACCTGC	1 cut(s)	56
Cac8I	GCNNGC	2 cut(s)	90, 256
CaiI	CAGNNNCTG	1 cut(s)	267
Cfr10I	RCCGGY	2 cut(s)	88, 250
Cfr13I	GGNCC	1 cut(s)	155
CsiI	ACCWGGT	1 cut(s)	163
CviAII	CATG	1 cut(s)	29
CviJI	RGCY	6 cut(s)	92, 133, 172, 241, 254, 264
CviKI_1	RGCY	6 cut(s)	92, 133, 172, 241, 254, 264
DdeI	CTNAG	1 cut(s)	33
DpnI	GATC	1 cut(s)	120
DpnII	GATC	1 cut(s)	118
Eam1104I	CTCTTC	1 cut(s)	98
EarI	CTCTTC	1 cut(s)	98
Eco31I	GGTCTC	1 cut(s)	74
Eco47I	GGWCC	1 cut(s)	155
Eco88I	CYCGRG	1 cut(s)	184
EcoRII	CCWGG	1 cut(s)	163
FaeI	CATG	1 cut(s)	32
FaiI	YATR	3 cut(s)	30, 95, 219
FatI	CATG	1 cut(s)	28
FblI	GTMKAC	1 cut(s)	39
Fnu4HI	GCNGC	2 cut(s)	265, 268
FokI	GGATG	1 cut(s)	202
Fsp4HI	GCNGC	2 cut(s)	265, 268
GluI	GCNGC	2 cut(s)	265, 268
HapII	CCGG	2 cut(s)	89, 251
Hin1II	CATG	1 cut(s)	32
HpaII	CCGG	2 cut(s)	89, 251
HphI	GGTGA	1 cut(s)	224
Hpy166II	GTNNAC	1 cut(s)	40
Hpy188III	TCNNGA	3 cut(s)	17, 122, 184
Hpy8I	GTNNAC	1 cut(s)	40
HpyAV	CCTTC	3 cut(s)	49, 109, 252
HpyCH4V	TGCA	2 cut(s)	65, 151
HpyF10VI	GCNNNNNNNGC	1 cut(s)	264
HpyF3I	CTNAG	1 cut(s)	33
Hsp92II	CATG	1 cut(s)	32
KroI	GCCGGC	1 cut(s)	88
KroNI	GCCGGC	1 cut(s)	90
Kzo9I	GATC	1 cut(s)	118
LpnPI	CCDG	8 cut(s)	25, 37, 51, 102, 150, 177, 240, 264
Lsp1109I	GCAGC	1 cut(s)	254
MabI	ACCWGGT	1 cut(s)	163
MalI	GATC	1 cut(s)	120
MboI	GATC	1 cut(s)	118
MboII	GAAGA	3 cut(s)	112, 115, 124
MluCI	AATT	1 cut(s)	209
MnlI	CCTC	8 cut(s)	28, 76, 101, 145, 180, 186, 237, 240
MroNI	GCCGGC	1 cut(s)	88
MroXI	GAANNNNTTC	1 cut(s)	241
MspA1I	CMGCKG	1 cut(s)	267
MspI	CCGG	2 cut(s)	89, 251
MspR9I	CCNGG	1 cut(s)	165
MvaI	CCWGG	1 cut(s)	165
MwoI	GCNNNNNNNGC	1 cut(s)	264
NaeI	GCCGGC	1 cut(s)	90
NdeII	GATC	1 cut(s)	118
NgoMIV	GCCGGC	1 cut(s)	88
NlaIII	CATG	1 cut(s)	32
NlaIV	GGNNCC	2 cut(s)	87, 259
PaeR7I	CTCGAG	1 cut(s)	184
PdiI	GCCGGC	1 cut(s)	90
PdmI	GAANNNNTTC	1 cut(s)	241
PflMI	CCANNNNNTGG	1 cut(s)	164
PkrI	GCNGC	2 cut(s)	266, 269
Psp6I	CCWGG	1 cut(s)	163
PspGI	CCWGG	1 cut(s)	163
PspN4I	GGNNCC	2 cut(s)	87, 259
PspPI	GGNCC	1 cut(s)	155
PstNI	CAGNNNCTG	1 cut(s)	267
SatI	GCNGC	2 cut(s)	265, 268
Sau3AI	GATC	1 cut(s)	118
Sau96I	GGNCC	1 cut(s)	155
ScrFI	CCNGG	1 cut(s)	165
SetI	ASST	5 cut(s)	39, 70, 87, 157, 166
SexAI	ACCWGGT	1 cut(s)	163
SfcI	CTRYAG	1 cut(s)	93
Sfr274I	CTCGAG	1 cut(s)	184
SinI	GGWCC	1 cut(s)	155
SlaI	CTCGAG	1 cut(s)	184
SmlI	CTYRAG	1 cut(s)	184
SmoI	CTYRAG	1 cut(s)	184
Sse9I	AATT	1 cut(s)	209
SsiI	CCGC	1 cut(s)	265
StyD4I	CCNGG	1 cut(s)	163
TaqI	TCGA	1 cut(s)	185
TasI	AATT	1 cut(s)	209
TauI	GCSGC	1 cut(s)	267
TseI	GCWGC	1 cut(s)	267
TspDTI	ATGAA	1 cut(s)	17
Van91I	CCANNNNNTGG	1 cut(s)	164
VpaK11BI	GGWCC	1 cut(s)	155
XhoI	CTCGAG	1 cut(s)	184
XmiI	GTMKAC	1 cut(s)	39
XmnI	GAANNNNTTC	1 cut(s)	241

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.