Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0002423

Physical Location & Seq

Genomic Coordinates Forward (+)

8994113 .. 8995862

Gene Structure 1750 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1047900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGGAGGGTTTGGCGGGTCCGACTATCCGATTTTGCCGCCTCCGTCGGAGATGCTGCCTGAGGAGTGTTTCGCTCTCAGAAATGGAAGAGAAATTGAGTGGAAGATGTTGGCAGAATGCGATTCATCCCGAGAAGGAGAAGAGAGAAAAGGAGTTGTTGGTTCAAATAATTGAGGAAGCTGATGAATTCAAGGTGGGATTCTACCAGAAGAGGAAGATCACTACTGAAAATAACAAGGCTGCTAACAGGGAAAGGGAGAAGTTTGGCGTTTCTCAGCTGTTCCTGGCTAATCAAGAGAAGTTTCATGCTGGGGTAGACAAGAACTACTGGAAGGCAATTGCGGACCTCATCCCCAATGAGGTGCCAGCAATAGAGAAGAAGAGAGGGAAGAAGGATATGGAAAGGAAGCCATCCATTCTCGTTGTCCAAGGTCCAAAGCCTGGAAAGCCAACCGAGCTTTCGAGGATGAGGCAGAGACTTTTAAAATTGAAGCATAATACACCTCCCCACCTTAAGCCTTCACCTCGAGCCCCAGCTCCCACCAAGGATGCAAAACCGAGTACTTCTGCTCCCCCCAAGGCTGCAGTTGTGGCGGCTACCCCCGAGGCTGTAGTTGCTGTTTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0006897 GO:0006898 GO:0008150 GO:0009504 GO:0009507 GO:0009524 GO:0009526 GO:0009536 GO:0009941 GO:0012506 GO:0016020 GO:0016192 GO:0030117 GO:0030118 GO:0030120 GO:0030125 GO:0030135 GO:0030136 GO:0030276 GO:0030659 GO:0030662 GO:0030665 GO:0031090 GO:0031410 GO:0031967 GO:0031975 GO:0031982 GO:0032050 GO:0032991 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048475 GO:0051179 GO:0051234 GO:0071944 GO:0072583 GO:0097708 GO:0098588 GO:0098657 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04142 ko04144 ko04721 ko04961 ko05016 ko05100 map04142 map04144 map04721 map04961 map05016 map05100

Pfam Domains

Protein Families

Clathrin_lg_ch

Protein Analysis

209

Amino Acids

23.48

Weight (kDa)

9.92

Isoelectric Point (pI)

48.12

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002423)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40060
fragaria_vesca	FvH4_4g08020 FvH4_7g24260
malus_domestica	MD00G1024200.v1.1 MD00G1047100.v1.1 MD00G1047900.v1.1 MD00G1048400.v1.1 MD00G1062700.v1.1 MD01G1132200.v1.1 MD01G1150700.v1.1 MD01G1152000.v1.1 MD05G1333900.v1.1 MD07G1216800.v1.1 MD07G1219900.v1.1
prunus_persica	Prupe.2G248500_v2.0.a1
pyrus_communis	pycom01g16830 pycom01g16850 pycom01g16880 pycom07g19900 pycom11g19450
rosa_chinensis	RchiOBHm_Chr1g0369851
rosa_laevigata	RLG00000027088 RLG00000027098
rosa_multiflora	Rmu_co8474619.1_g000001 Rmu_sc0008140.1_g000010
rosa_roxburghii	Rroxscaffold_3G00232620 Rroxscaffold_4G00286940 Rroxscaffold_4G00287110 Rroxscaffold_4G00322920
rosa_rugosa	Rorug01G0352700
rosa_samantha	Rh1AG194100 Rh1AG361200 Rh1BG178100 Rh1BG324900 Rh1CG179000 Rh1CG338100 Rh1DG087000 Rh1DG207800 Rh1DG355300
rosa_wichuraiana	Rw0G015470 Rw1G031810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	361
AccB7I	CCANNNNNTGG	1 cut(s)	440
AccI	GTMKAC	1 cut(s)	315
AciI	CCGC	4 cut(s)	14, 37, 341, 593
AcsI	RAATTY	1 cut(s)	185
AfaI	GTAC	1 cut(s)	562
AfiI	CCNNNNNNNGG	2 cut(s)	358, 440
AflII	CTTAAG	1 cut(s)	512
AgsI	TTSAA	3 cut(s)	164, 190, 490
AjnI	CCWGG	2 cut(s)	282, 439
AjuI	GAANNNNNNNTTGG	2 cut(s)	442, 474
AluBI	AGCT	4 cut(s)	179, 277, 457, 536
AluI	AGCT	4 cut(s)	179, 277, 457, 536
Alw26I	GTCTC	1 cut(s)	469
Ama87I	CYCGRG	3 cut(s)	128, 525, 602
ApeKI	GCWGC	3 cut(s)	54, 239, 581
ApoI	RAATTY	1 cut(s)	185
AspS9I	GGNCC	3 cut(s)	17, 343, 431
AsuHPI	GGTGA	1 cut(s)	513
AvaI	CYCGRG	3 cut(s)	128, 525, 602
AvaII	GGWCC	3 cut(s)	17, 343, 431
AxyI	CCTNAGG	1 cut(s)	59
BanI	GGYRCC	1 cut(s)	361
BanII	GRGCYC	1 cut(s)	532
BbvI	GCAGC	3 cut(s)	41, 226, 568
BccI	CCATC	1 cut(s)	418
BciT130I	CCWGG	2 cut(s)	284, 441
BcoDI	GTCTC	1 cut(s)	469
BfmI	CTRYAG	2 cut(s)	582, 609
BfrI	CTTAAG	1 cut(s)	512
BisI	GCNGC	5 cut(s)	37, 55, 240, 582, 594
BlsI	GCNGC	5 cut(s)	38, 56, 241, 583, 595
BmcAI	AGTACT	1 cut(s)	562
Bme1390I	CCNGG	2 cut(s)	284, 441
Bme18I	GGWCC	3 cut(s)	17, 343, 431
BmeT110I	CYCGRG	3 cut(s)	128, 525, 602
BmgT120I	GGNCC	3 cut(s)	17, 343, 431
BmiI	GGNNCC	2 cut(s)	18, 363
BmrFI	CCNGG	2 cut(s)	284, 441
BmsI	GCATC	2 cut(s)	41, 538
BsaJI	CCNNGG	4 cut(s)	427, 543, 576, 603
BsaXI	ACNNNNNCTCC	2 cut(s)	553, 583
Bsc4I	CCNNNNNNNGG	2 cut(s)	358, 440
Bse1I	ACTGG	1 cut(s)	332
Bse21I	CCTNAGG	1 cut(s)	59
BseBI	CCWGG	2 cut(s)	284, 441
BseDI	CCNNGG	4 cut(s)	427, 543, 576, 603
BseGI	GGATG	5 cut(s)	124, 348, 410, 471, 553
BseLI	CCNNNNNNNGG	2 cut(s)	358, 440
BseMII	CTCAG	3 cut(s)	50, 90, 287
BseNI	ACTGG	1 cut(s)	332
BseRI	GAGGAG	1 cut(s)	76
BseXI	GCAGC	3 cut(s)	41, 226, 568
BseYI	CCCAGC	2 cut(s)	308, 532
BshNI	GGYRCC	1 cut(s)	361
BsiHKCI	CYCGRG	3 cut(s)	128, 525, 602
BslI	CCNNNNNNNGG	2 cut(s)	358, 440
BsmAI	GTCTC	1 cut(s)	469
BsmI	GAATGC	1 cut(s)	121
BsoBI	CYCGRG	3 cut(s)	128, 525, 602
Bsp1286I	GDGCHC	1 cut(s)	532
Bsp143I	GATC	1 cut(s)	216
BspACI	CCGC	4 cut(s)	14, 37, 341, 593
BspCNI	CTCAG	3 cut(s)	51, 89, 286
BspLI	GGNNCC	2 cut(s)	18, 363
BspMAI	CTGCAG	1 cut(s)	586
BspT107I	GGYRCC	1 cut(s)	361
BspTI	CTTAAG	1 cut(s)	512
BsrI	ACTGG	1 cut(s)	332
BssECI	CCNNGG	4 cut(s)	427, 543, 576, 603
BssMI	GATC	1 cut(s)	216
BssT1I	CCWWGG	3 cut(s)	427, 543, 576
Bst2UI	CCWGG	2 cut(s)	284, 441
Bst6I	CTCTTC	4 cut(s)	81, 134, 203, 374
BstAFI	CTTAAG	1 cut(s)	512
BstC8I	GCNNGC	1 cut(s)	366
BstDEI	CTNAG	3 cut(s)	59, 76, 273
BstF5I	GGATG	5 cut(s)	124, 348, 410, 471, 553
BstKTI	GATC	1 cut(s)	219
BstMAI	GTCTC	1 cut(s)	469
BstMBI	GATC	1 cut(s)	216
BstMWI	GCNNNNNNNGC	4 cut(s)	445, 454, 590, 614
BstNI	CCWGG	2 cut(s)	284, 441
BstSCI	CCNGG	2 cut(s)	282, 439
BstSFI	CTRYAG	2 cut(s)	582, 609
BstV1I	GCAGC	3 cut(s)	41, 226, 568
Bsu36I	CCTNAGG	1 cut(s)	59
BtsCI	GGATG	5 cut(s)	124, 348, 410, 471, 553
Cac8I	GCNNGC	1 cut(s)	366
Cfr13I	GGNCC	3 cut(s)	17, 343, 431
Csp6I	GTAC	1 cut(s)	561
CviAII	CATG	1 cut(s)	305
CviQI	GTAC	1 cut(s)	561
DdeI	CTNAG	3 cut(s)	59, 76, 273
DpnI	GATC	1 cut(s)	218
DpnII	GATC	1 cut(s)	216
DraI	TTTAAA	1 cut(s)	483
Eam1104I	CTCTTC	4 cut(s)	81, 134, 203, 374
EarI	CTCTTC	4 cut(s)	81, 134, 203, 374
Eco130I	CCWWGG	3 cut(s)	427, 543, 576
Eco24I	GRGCYC	1 cut(s)	532
Eco47I	GGWCC	3 cut(s)	17, 343, 431
Eco81I	CCTNAGG	1 cut(s)	59
Eco88I	CYCGRG	3 cut(s)	128, 525, 602
EcoRI	GAATTC	1 cut(s)	185
EcoRII	CCWGG	2 cut(s)	282, 439
EcoT14I	CCWWGG	3 cut(s)	427, 543, 576
EcoT38I	GRGCYC	1 cut(s)	532
ErhI	CCWWGG	3 cut(s)	427, 543, 576
FaeI	CATG	1 cut(s)	308
FaiI	YATR	3 cut(s)	306, 398, 495
FatI	CATG	1 cut(s)	304
FauI	CCCGC	1 cut(s)	7
FblI	GTMKAC	1 cut(s)	315
Fnu4HI	GCNGC	5 cut(s)	37, 55, 240, 582, 594
FokI	GGATG	5 cut(s)	111, 335, 397, 478, 560
FriOI	GRGCYC	1 cut(s)	532
Fsp4HI	GCNGC	5 cut(s)	37, 55, 240, 582, 594
GluI	GCNGC	5 cut(s)	37, 55, 240, 582, 594
GsaI	CCCAGC	2 cut(s)	312, 536
Hin1II	CATG	1 cut(s)	308
HinfI	GANTC	2 cut(s)	121, 198
HphI	GGTGA	1 cut(s)	513
Hpy166II	GTNNAC	1 cut(s)	316
Hpy188I	TCNGA	4 cut(s)	21, 29, 48, 79
Hpy188III	TCNNGA	2 cut(s)	128, 293
Hpy8I	GTNNAC	1 cut(s)	316
Hpy99I	CGWCG	1 cut(s)	48
HpyAV	CCTTC	4 cut(s)	127, 325, 385, 528
HpyCH4V	TGCA	2 cut(s)	551, 584
HpyF10VI	GCNNNNNNNGC	4 cut(s)	445, 454, 590, 614
HpyF3I	CTNAG	3 cut(s)	59, 76, 273
Hsp92II	CATG	1 cut(s)	308
Kzo9I	GATC	1 cut(s)	216
LmnI	GCTCC	2 cut(s)	541, 574
Lsp1109I	GCAGC	3 cut(s)	41, 226, 568
LweI	GCATC	2 cut(s)	41, 538
MalI	GATC	1 cut(s)	218
MboI	GATC	1 cut(s)	216
MboII	GAAGA	8 cut(s)	98, 114, 151, 220, 226, 388, 391, 400
MfeI	CAATTG	1 cut(s)	336
MhlI	GDGCHC	1 cut(s)	532
MluCI	AATT	5 cut(s)	92, 168, 185, 336, 485
MmeI	TCCRAC	2 cut(s)	26, 44
MseI	TTAA	2 cut(s)	482, 513
MspA1I	CMGCKG	1 cut(s)	277
MspCI	CTTAAG	1 cut(s)	512
MspR9I	CCNGG	2 cut(s)	284, 441
MunI	CAATTG	1 cut(s)	336
Mva1269I	GAATGC	1 cut(s)	121
MvaI	CCWGG	2 cut(s)	284, 441
MwoI	GCNNNNNNNGC	4 cut(s)	445, 454, 590, 614
NdeII	GATC	1 cut(s)	216
NlaIII	CATG	1 cut(s)	308
NlaIV	GGNNCC	2 cut(s)	18, 363
PaeR7I	CTCGAG	1 cut(s)	525
PctI	GAATGC	1 cut(s)	121
PfeI	GAWTC	2 cut(s)	121, 198
PflMI	CCANNNNNTGG	1 cut(s)	440
PkrI	GCNGC	5 cut(s)	38, 56, 241, 583, 595
Psp6I	CCWGG	2 cut(s)	282, 439
PspFI	CCCAGC	2 cut(s)	308, 532
PspGI	CCWGG	2 cut(s)	282, 439
PspN4I	GGNNCC	2 cut(s)	18, 363
PspPI	GGNCC	3 cut(s)	17, 343, 431
PspXI	VCTCGAGB	1 cut(s)	525
PstI	CTGCAG	1 cut(s)	586
PvuII	CAGCTG	1 cut(s)	277
RsaI	GTAC	1 cut(s)	562
RsaNI	GTAC	1 cut(s)	561
SaqAI	TTAA	2 cut(s)	482, 513
SatI	GCNGC	5 cut(s)	37, 55, 240, 582, 594
Sau3AI	GATC	1 cut(s)	216
Sau96I	GGNCC	3 cut(s)	17, 343, 431
ScaI	AGTACT	1 cut(s)	562
ScrFI	CCNGG	2 cut(s)	284, 441
SduI	GDGCHC	1 cut(s)	532
SfaNI	GCATC	2 cut(s)	41, 538
SfcI	CTRYAG	2 cut(s)	582, 609
Sfr274I	CTCGAG	1 cut(s)	525
SinI	GGWCC	3 cut(s)	17, 343, 431
SlaI	CTCGAG	1 cut(s)	525
SmlI	CTYRAG	2 cut(s)	512, 525
SmoI	CTYRAG	2 cut(s)	512, 525
Sse9I	AATT	5 cut(s)	92, 168, 185, 336, 485
SsiI	CCGC	4 cut(s)	14, 37, 341, 593
StyD4I	CCNGG	2 cut(s)	282, 439
StyI	CCWWGG	3 cut(s)	427, 543, 576
TaqI	TCGA	2 cut(s)	461, 526
TasI	AATT	5 cut(s)	92, 168, 185, 336, 485
TatI	WGTACW	1 cut(s)	560
TauI	GCSGC	2 cut(s)	39, 596
TfiI	GAWTC	2 cut(s)	121, 198
Tru1I	TTAA	2 cut(s)	482, 513
Tru9I	TTAA	2 cut(s)	482, 513
TseI	GCWGC	3 cut(s)	54, 239, 581
TspDTI	ATGAA	3 cut(s)	113, 198, 293
TspGWI	ACGGA	1 cut(s)	32
Van91I	CCANNNNNTGG	1 cut(s)	440
Vha464I	CTTAAG	1 cut(s)	512
VpaK11BI	GGWCC	3 cut(s)	17, 343, 431
XapI	RAATTY	1 cut(s)	185
XhoI	CTCGAG	1 cut(s)	525
XmiI	GTMKAC	1 cut(s)	315
ZrmI	AGTACT	1 cut(s)	562

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.