Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8474619.1

Orthogroup ID

OG0002423

Physical Location & Seq

Genomic Coordinates Reverse (-)

1084 .. 2080

Gene Structure 997 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8474619.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 417 bp

atgtcctcctcctccttcactcttcccgatgacgactccgtccccaccaccgggtcaacccgcccctttgacgacgacgactacctccgctacgagcatgactccgtcgtagtggacgacgtgttcgcgactgagacagaagctccatctccgccgtcggtcttcgctgccggatcggacaatccgattcttccgcctccgtccgagatgctgccggaggagggctccgctctcagagaatggaggaggcagaatgcaattcagcttgcagagaaagagaagagagaaaaggagttattgagccaaatcatcgaggaagctgaagatttcaaggttgaattctaccagaagaggaagatcacttctgagaataacaaagctgctaacagggaaaaagagaaggttagatcaagttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0006897 GO:0006898 GO:0008150 GO:0009504 GO:0009507 GO:0009524 GO:0009526 GO:0009536 GO:0009941 GO:0012506 GO:0016020 GO:0016192 GO:0030117 GO:0030118 GO:0030120 GO:0030125 GO:0030135 GO:0030136 GO:0030276 GO:0030659 GO:0030662 GO:0030665 GO:0031090 GO:0031410 GO:0031967 GO:0031975 GO:0031982 GO:0032050 GO:0032991 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048475 GO:0051179 GO:0051234 GO:0071944 GO:0072583 GO:0097708 GO:0098588 GO:0098657 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04142 ko04144 ko04721 ko04961 ko05016 ko05100 map04142 map04144 map04721 map04961 map05016 map05100

Pfam Domains

Protein Families

Clathrin_lg_ch

Protein Analysis

138

Amino Acids

15.64

Weight (kDa)

4.54

Isoelectric Point (pI)

74.3

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002423)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40060
fragaria_vesca	FvH4_4g08020 FvH4_7g24260
malus_domestica	MD00G1024200.v1.1 MD00G1047100.v1.1 MD00G1047900.v1.1 MD00G1048400.v1.1 MD00G1062700.v1.1 MD01G1132200.v1.1 MD01G1150700.v1.1 MD01G1152000.v1.1 MD05G1333900.v1.1 MD07G1216800.v1.1 MD07G1219900.v1.1
prunus_persica	Prupe.2G248500_v2.0.a1
pyrus_communis	pycom01g16830 pycom01g16850 pycom01g16880 pycom07g19900 pycom11g19450
rosa_chinensis	RchiOBHm_Chr1g0369851
rosa_laevigata	RLG00000027088 RLG00000027098
rosa_multiflora	Rmu_co8474619.1_g000001 Rmu_sc0008140.1_g000010
rosa_roxburghii	Rroxscaffold_3G00232620 Rroxscaffold_4G00286940 Rroxscaffold_4G00287110 Rroxscaffold_4G00322920
rosa_rugosa	Rorug01G0352700
rosa_samantha	Rh1AG194100 Rh1AG361200 Rh1BG178100 Rh1BG324900 Rh1CG179000 Rh1CG338100 Rh1DG087000 Rh1DG207800 Rh1DG355300
rosa_wichuraiana	Rw0G015470 Rw1G031810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	38
AccBSI	CCGCTC	1 cut(s)	230
AccII	CGCG	1 cut(s)	128
AciI	CCGC	5 cut(s)	61, 88, 152, 194, 228
AclWI	GGATC	1 cut(s)	181
AcsI	RAATTY	1 cut(s)	338
AcuI	CTGAAG	1 cut(s)	342
AfiI	CCNNNNNNNGG	3 cut(s)	50, 51, 221
AflIII	ACRYGT	1 cut(s)	120
AgsI	TTSAA	2 cut(s)	331, 338
AjiI	CACGTC	1 cut(s)	121
AloI	GAACNNNNNNTCC	2 cut(s)	107, 139
AluBI	AGCT	4 cut(s)	143, 265, 320, 380
AluI	AGCT	4 cut(s)	143, 265, 320, 380
Alw26I	GTCTC	1 cut(s)	128
AlwI	GGATC	1 cut(s)	181
ApeKI	GCWGC	3 cut(s)	167, 211, 380
ApoI	RAATTY	1 cut(s)	338
ArsI	GACNNNNNNTTYG	2 cut(s)	107, 139
AsuC2I	CCSGG	1 cut(s)	52
BanII	GRGCYC	1 cut(s)	227
BbsI	GAAGAC	1 cut(s)	154
BbvI	GCAGC	3 cut(s)	154, 198, 367
BccI	CCATC	1 cut(s)	154
BceAI	ACGGC	1 cut(s)	139
BcnI	CCSGG	1 cut(s)	52
BcoDI	GTCTC	1 cut(s)	128
BisI	GCNGC	3 cut(s)	168, 212, 381
BlsI	GCNGC	3 cut(s)	169, 213, 382
Bme1390I	CCNGG	1 cut(s)	52
BmgBI	CACGTC	1 cut(s)	121
BmiI	GGNNCC	1 cut(s)	226
BmrFI	CCNGG	1 cut(s)	52
BmsI	GCATC	1 cut(s)	198
BpiI	GAAGAC	1 cut(s)	154
BplI	GAGNNNNNCTC	4 cut(s)	86, 118, 209, 241
BpuMI	CCSGG	1 cut(s)	52
BsaXI	ACNNNNNCTCC	2 cut(s)	127, 157
Bsc4I	CCNNNNNNNGG	3 cut(s)	50, 51, 221
BseLI	CCNNNNNNNGG	3 cut(s)	50, 51, 221
BseMII	CTCAG	3 cut(s)	123, 247, 357
BseRI	GAGGAG	2 cut(s)	233, 259
BseXI	GCAGC	3 cut(s)	154, 198, 367
Bsh1236I	CGCG	1 cut(s)	128
BsiSI	CCGG	3 cut(s)	51, 171, 215
BslFI	GGGAC	1 cut(s)	26
BslI	CCNNNNNNNGG	3 cut(s)	50, 51, 221
BsmAI	GTCTC	1 cut(s)	128
BsmFI	GGGAC	1 cut(s)	26
BsmI	GAATGC	1 cut(s)	259
Bsp1286I	GDGCHC	1 cut(s)	227
Bsp143I	GATC	3 cut(s)	173, 357, 407
Bsp68I	TCGCGA	1 cut(s)	128
BspACI	CCGC	5 cut(s)	61, 88, 152, 194, 228
BspCNI	CTCAG	3 cut(s)	124, 246, 358
BspFNI	CGCG	1 cut(s)	128
BspLI	GGNNCC	1 cut(s)	226
BspPI	GGATC	1 cut(s)	181
BsrBI	CCGCTC	1 cut(s)	230
BssMI	GATC	3 cut(s)	173, 357, 407
Bst6I	CTCTTC	3 cut(s)	27, 275, 344
BstC8I	GCNNGC	1 cut(s)	267
BstDEI	CTNAG	3 cut(s)	132, 233, 366
BstFNI	CGCG	1 cut(s)	128
BstKTI	GATC	3 cut(s)	176, 360, 410
BstMAI	GTCTC	1 cut(s)	128
BstMBI	GATC	3 cut(s)	173, 357, 407
BstSCI	CCNGG	1 cut(s)	50
BstUI	CGCG	1 cut(s)	128
BstV1I	GCAGC	3 cut(s)	154, 198, 367
BstV2I	GAAGAC	1 cut(s)	154
BtrI	CACGTC	1 cut(s)	121
BtuMI	TCGCGA	1 cut(s)	128
Cac8I	GCNNGC	1 cut(s)	267
CviAII	CATG	1 cut(s)	98
CviJI	RGCY	6 cut(s)	143, 225, 265, 303, 320, 380
CviKI_1	RGCY	6 cut(s)	143, 225, 265, 303, 320, 380
DdeI	CTNAG	3 cut(s)	132, 233, 366
DpnI	GATC	3 cut(s)	175, 359, 409
DpnII	GATC	3 cut(s)	173, 357, 407
DrdI	GACNNNNNNGTC	1 cut(s)	38
DseDI	GACNNNNNNGTC	1 cut(s)	38
Eam1104I	CTCTTC	3 cut(s)	27, 275, 344
EarI	CTCTTC	3 cut(s)	27, 275, 344
EciI	GGCGGA	2 cut(s)	141, 183
Eco24I	GRGCYC	1 cut(s)	227
Eco57I	CTGAAG	1 cut(s)	342
EcoRI	GAATTC	1 cut(s)	338
EcoT38I	GRGCYC	1 cut(s)	227
FaeI	CATG	1 cut(s)	101
FaiI	YATR	1 cut(s)	99
FaqI	GGGAC	1 cut(s)	26
FatI	CATG	1 cut(s)	97
FauI	CCCGC	1 cut(s)	68
Fnu4HI	GCNGC	3 cut(s)	168, 212, 381
FriOI	GRGCYC	1 cut(s)	227
Fsp4HI	GCNGC	3 cut(s)	168, 212, 381
GluI	GCNGC	3 cut(s)	168, 212, 381
HapII	CCGG	3 cut(s)	51, 171, 215
Hin1II	CATG	1 cut(s)	101
HincII	GTYRAC	1 cut(s)	57
HindII	GTYRAC	1 cut(s)	57
HinfI	GANTC	3 cut(s)	35, 101, 187
HpaII	CCGG	3 cut(s)	51, 171, 215
Hpy166II	GTNNAC	2 cut(s)	57, 115
Hpy188I	TCNGA	5 cut(s)	178, 186, 205, 236, 367
Hpy188III	TCNNGA	2 cut(s)	26, 127
Hpy8I	GTNNAC	2 cut(s)	57, 115
Hpy99I	CGWCG	5 cut(s)	77, 80, 110, 122, 160
HpyAV	CCTTC	2 cut(s)	25, 394
HpyCH4IV	ACGT	1 cut(s)	120
HpyCH4V	TGCA	2 cut(s)	257, 269
HpyF3I	CTNAG	3 cut(s)	132, 233, 366
HpySE526I	ACGT	1 cut(s)	120
Hsp92II	CATG	1 cut(s)	101
Kzo9I	GATC	3 cut(s)	173, 357, 407
LmnI	GCTCC	2 cut(s)	148, 230
LpnPI	CCDG	5 cut(s)	64, 184, 228, 359, 373
Lsp1109I	GCAGC	3 cut(s)	154, 198, 367
LweI	GCATC	1 cut(s)	198
MaeII	ACGT	1 cut(s)	120
MalI	GATC	3 cut(s)	175, 359, 409
MbiI	CCGCTC	1 cut(s)	230
MboI	GATC	3 cut(s)	173, 357, 407
MboII	GAAGA	7 cut(s)	14, 154, 182, 292, 335, 361, 367
MhlI	GDGCHC	1 cut(s)	227
MluCI	AATT	2 cut(s)	258, 338
MlyI	GAGTC	2 cut(s)	29, 95
MseI	TTAA	1 cut(s)	415
MspI	CCGG	3 cut(s)	51, 171, 215
MspR9I	CCNGG	1 cut(s)	52
Mva1269I	GAATGC	1 cut(s)	259
MvnI	CGCG	1 cut(s)	128
NciI	CCSGG	1 cut(s)	52
NdeII	GATC	3 cut(s)	173, 357, 407
NlaIII	CATG	1 cut(s)	101
NlaIV	GGNNCC	1 cut(s)	226
NruI	TCGCGA	1 cut(s)	128
PcsI	WCGNNNNNNNCGW	2 cut(s)	114, 182
PctI	GAATGC	1 cut(s)	259
PfeI	GAWTC	1 cut(s)	187
PflFI	GACNNNGTC	2 cut(s)	38, 104
PkrI	GCNGC	3 cut(s)	169, 213, 382
PleI	GAGTC	2 cut(s)	29, 95
PpsI	GAGTC	2 cut(s)	29, 95
PspN4I	GGNNCC	1 cut(s)	226
PsyI	GACNNNGTC	2 cut(s)	38, 104
RruI	TCGCGA	1 cut(s)	128
SaqAI	TTAA	1 cut(s)	415
SatI	GCNGC	3 cut(s)	168, 212, 381
Sau3AI	GATC	3 cut(s)	173, 357, 407
SchI	GAGTC	2 cut(s)	29, 95
ScrFI	CCNGG	1 cut(s)	52
SduI	GDGCHC	1 cut(s)	227
SetI	ASST	8 cut(s)	87, 123, 145, 267, 322, 336, 382, 405
SfaNI	GCATC	1 cut(s)	198
Sse9I	AATT	2 cut(s)	258, 338
SsiI	CCGC	5 cut(s)	61, 88, 152, 194, 228
StyD4I	CCNGG	1 cut(s)	50
TaiI	ACGT	1 cut(s)	123
TaqI	TCGA	1 cut(s)	312
TaqII	GACCGA	1 cut(s)	148
TasI	AATT	2 cut(s)	258, 338
TfiI	GAWTC	1 cut(s)	187
Tru1I	TTAA	1 cut(s)	415
Tru9I	TTAA	1 cut(s)	415
TseI	GCWGC	3 cut(s)	167, 211, 380
TspGWI	ACGGA	3 cut(s)	28, 94, 189
Tth111I	GACNNNGTC	2 cut(s)	38, 104
XapI	RAATTY	1 cut(s)	338

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.