pycom01g16880

Clathrin is the major protein of the polyhedral coat of coated pits and vesicles

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr1
Physical Location & Seq
Forward (+)
16333273 .. 16335481
2209 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom01g16880.2

Sequence Viewer

Length: 1035 bp
ATGGCGCAAAGACCAGTCATGCCGGATACTGCAGGACTTGCTCTCAACCGCCGGCCCAATGGGCCTGCCCAAACCCAACTCAAAGCCCGCGGATATTTCTCCTGCGTAGTTTTTGCCTCTGCAAGCATTTCACTCGGCAGTTTCTTGCGTGTCAGTACATTTGACTCGATCATGGCCTCGTTCACTCAGCCCGAAGAAGACTCCGTCCCGACCACCACGTCAACTCGCCCGTTCGACGACGACGGCTATCTGGGTTACGACCCCCGACTCCCCTCCCAGCGATTCGACTCCTTCGTCGACACCGAGTCGCTCAAGGACTCCGCCACCGATTCCCCAATCTTCCACGGCTCCGCCGTAGGCGATGCTTTCGCCACTCAGCCTGCGTCGGAGGCCTTCTCTCCTCCTTCGATCTACCCCGAATCGAATGGACAGGGCTTTGATGGAGGTTTTGGCGGGTCCGACGATCCCATTTTGCCGCCTCCGTCGGAGATGCTGCCTGAGGAGGGCTTCGCTCTCAGAGAATGGAGGAGGCAGAATGCAATTCAGCTCGAGGAGAAGGAAAGGCGGGAAAAGGAGTTGTTGGTTCAGATAATCGAGGAAGCAGATGAATTCAAGGTGGGATTCTACCAGAAGAGGAAGATCACTACTGAAAACAACAAGGCTGCTAACAGGGAAAGGGAGAAGCTGTTCCTGGCTAATCAAGAGAAGTTTCATGCTGAGGTAGACAAGAACTACTGGAAGGCAATTGCTGACCTCATTCCAAATGAGGTGCCGGCTATAGAGAAGAAGAGAGGGAAGAAGGATCAGGAAAAGAAGCCATCCATTCTCATTGTCCAGGGACCAAAGCCCGGAAAGCCAACCGAGCTTTCAAGGATGAGGCAGATACTTTTAAAGTTGAAGCACAATACCCCTCCCCACCTTAAGCCATCACCACCGGCCCCAACTCCCGCCAAGGACGCAAAACCGAGTACTTCTGCTCCTCCCAAGGCAGCAATTGCCGCAGCTACCCCCGAGGCTGTAGTTGCTTCTTCATAA

Protein Analysis

345

Amino Acids

37.81

Weight (kDa)

6.19

Isoelectric Point (pI)

56.53

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 2 cut(s) 217, 293
AccB1I GGYRCC 1 cut(s) 769
AccI GTMKAC 2 cut(s) 297, 723
AccII CGCG 1 cut(s) 90
AclWI GGATC 2 cut(s) 458, 810
AcsI RAATTY 1 cut(s) 608
AfaI GTAC 2 cut(s) 157, 970
AfiI CCNNNNNNNGG 2 cut(s) 503, 848
AflII CTTAAG 1 cut(s) 920
AgsI TTSAA 3 cut(s) 613, 870, 898
AhdI GACNNNNNGTC 1 cut(s) 304
AjiI CACGTC 1 cut(s) 219
AjnI CCWGG 2 cut(s) 690, 834
AjuI GAANNNNNNNTTGG 2 cut(s) 850, 882
AloI GAACNNNNNNTCC 2 cut(s) 671, 703
AluBI AGCT 4 cut(s) 547, 685, 865, 1004
AluI AGCT 4 cut(s) 547, 685, 865, 1004
AlwI GGATC 2 cut(s) 458, 810
Ama87I CYCGRG 2 cut(s) 548, 1010
AoxI GGCC 5 cut(s) 53, 62, 174, 390, 936
ApeKI GCWGC 4 cut(s) 493, 662, 989, 1001
ApoI RAATTY 1 cut(s) 608
Asp700I GAANNNNTTC 1 cut(s) 686
AspLEI GCGC 1 cut(s) 7
AspS9I GGNCC 5 cut(s) 54, 62, 456, 839, 937
AsuC2I CCSGG 1 cut(s) 849
AsuHPI GGTGA 1 cut(s) 921
AvaI CYCGRG 2 cut(s) 548, 1010
AvaII GGWCC 2 cut(s) 456, 839
AxyI CCTNAGG 1 cut(s) 498
BanI GGYRCC 1 cut(s) 769
BbsI GAAGAC 1 cut(s) 204
BbvCI CCTCAGC 1 cut(s) 717
BbvI GCAGC 4 cut(s) 480, 649, 1001, 1013
BccI CCATC 3 cut(s) 434, 826, 934
BceAI ACGGC 3 cut(s) 259, 338, 361
BcgI CGANNNNNNTGC 2 cut(s) 115, 149
BciT130I CCWGG 2 cut(s) 692, 836
BciVI GTATCC 1 cut(s) 19
BcnI CCSGG 1 cut(s) 849
BfmI CTRYAG 3 cut(s) 30, 777, 1017
BfrI CTTAAG 1 cut(s) 920
BfuI GTATCC 1 cut(s) 19
BglI GCCNNNNNGGC 1 cut(s) 61
BisI GCNGC 6 cut(s) 476, 494, 663, 990, 999, 1002
BlsI GCNGC 6 cut(s) 477, 495, 664, 991, 1000, 1003
BmcAI AGTACT 1 cut(s) 970
Bme1390I CCNGG 3 cut(s) 692, 836, 849
Bme18I GGWCC 2 cut(s) 456, 839
BmeRI GACNNNNNGTC 1 cut(s) 304
BmeT110I CYCGRG 2 cut(s) 548, 1010
BmgBI CACGTC 1 cut(s) 219
BmgT120I GGNCC 5 cut(s) 54, 62, 456, 839, 937
BmiI GGNNCC 5 cut(s) 349, 457, 771, 840, 939
BmrFI CCNGG 3 cut(s) 692, 836, 849
BmsI GCATC 2 cut(s) 352, 480
BpiI GAAGAC 1 cut(s) 204
BplI GAGNNNNNCTC 2 cut(s) 380, 412
Bpu10I CCTNAGC 1 cut(s) 717
BpuEI CTTGAG 1 cut(s) 296
BpuMI CCSGG 1 cut(s) 849
BsaJI CCNNGG 6 cut(s) 88, 343, 835, 951, 984, 1011
BsaXI ACNNNNNCTCC 4 cut(s) 671, 701, 961, 991
Bsc4I CCNNNNNNNGG 2 cut(s) 503, 848
Bse118I RCCGGY 3 cut(s) 51, 772, 934
Bse1I ACTGG 2 cut(s) 14, 740
Bse21I CCTNAGG 1 cut(s) 498
BseBI CCWGG 2 cut(s) 692, 836
BseDI CCNNGG 6 cut(s) 88, 343, 835, 951, 984, 1011
BseGI GGATG 2 cut(s) 818, 879
BseLI CCNNNNNNNGG 2 cut(s) 503, 848
BseMII CTCAG 5 cut(s) 200, 389, 489, 529, 708
BseNI ACTGG 2 cut(s) 14, 740
BseRI GAGGAG 5 cut(s) 390, 515, 541, 566, 969
BseXI GCAGC 4 cut(s) 480, 649, 1001, 1013
BseYI CCCAGC 1 cut(s) 276
Bsh1236I CGCG 1 cut(s) 90
BshFI GGCC 5 cut(s) 55, 64, 176, 392, 938
BshNI GGYRCC 1 cut(s) 769
BsiHKCI CYCGRG 2 cut(s) 548, 1010
BsiSI CCGG 5 cut(s) 23, 52, 773, 849, 935
BslFI GGGAC 2 cut(s) 191, 852
BslI CCNNNNNNNGG 2 cut(s) 503, 848
BsmFI GGGAC 2 cut(s) 191, 852
BsmI GAATGC 1 cut(s) 541
BsnI GGCC 5 cut(s) 55, 64, 176, 392, 938
BsoBI CYCGRG 2 cut(s) 548, 1010
Bsp143I GATC 5 cut(s) 168, 408, 463, 639, 802
BspANI GGCC 5 cut(s) 55, 64, 176, 392, 938
BspCNI CTCAG 5 cut(s) 199, 388, 490, 528, 709
BspFNI CGCG 1 cut(s) 90
BspLI GGNNCC 5 cut(s) 349, 457, 771, 840, 939
BspMAI CTGCAG 1 cut(s) 34
BspPI GGATC 2 cut(s) 458, 810
BspT107I GGYRCC 1 cut(s) 769
BspTI CTTAAG 1 cut(s) 920
BsrFI RCCGGY 3 cut(s) 51, 772, 934
BsrI ACTGG 2 cut(s) 14, 740
BssAI RCCGGY 3 cut(s) 51, 772, 934
BssECI CCNNGG 6 cut(s) 88, 343, 835, 951, 984, 1011
BssMI GATC 5 cut(s) 168, 408, 463, 639, 802
BssT1I CCWWGG 2 cut(s) 951, 984
Bst2UI CCWGG 2 cut(s) 692, 836
Bst6I CTCTTC 2 cut(s) 626, 782
BstAFI CTTAAG 1 cut(s) 920
BstAPI GCANNNNNTGC 2 cut(s) 38, 995
BstC8I GCNNGC 6 cut(s) 53, 66, 88, 124, 381, 774
BstDEI CTNAG 5 cut(s) 186, 375, 498, 515, 717
BstDSI CCRYGG 2 cut(s) 88, 343
BstF5I GGATG 2 cut(s) 818, 879
BstFNI CGCG 1 cut(s) 90
BstHHI GCGC 1 cut(s) 7
BstKTI GATC 5 cut(s) 171, 411, 466, 642, 805
BstMBI GATC 5 cut(s) 168, 408, 463, 639, 802
BstMWI GCNNNNNNNGC 9 cut(s) 38, 61, 389, 853, 862, 956, 995, 998, 1022
BstNI CCWGG 2 cut(s) 692, 836
BstSCI CCNGG 3 cut(s) 690, 834, 847
BstSFI CTRYAG 3 cut(s) 30, 777, 1017
BstUI CGCG 1 cut(s) 90
BstV1I GCAGC 4 cut(s) 480, 649, 1001, 1013
BstV2I GAAGAC 1 cut(s) 204
Bsu36I CCTNAGG 1 cut(s) 498
BsuI GTATCC 1 cut(s) 19
BsuRI GGCC 5 cut(s) 55, 64, 176, 392, 938
BtgI CCRYGG 2 cut(s) 88, 343
BtgZI GCGATG 1 cut(s) 375
BtrI CACGTC 1 cut(s) 219
BtsCI GGATG 2 cut(s) 818, 879
Cac8I GCNNGC 6 cut(s) 53, 66, 88, 124, 381, 774
CfoI GCGC 1 cut(s) 7
Cfr10I RCCGGY 3 cut(s) 51, 772, 934
Cfr13I GGNCC 5 cut(s) 54, 62, 456, 839, 937
Cfr42I CCGCGG 1 cut(s) 91
CseI GACGC 2 cut(s) 372, 965
Csp6I GTAC 2 cut(s) 156, 969
CviAII CATG 3 cut(s) 19, 172, 713
CviQI GTAC 2 cut(s) 156, 969
DdeI CTNAG 5 cut(s) 186, 375, 498, 515, 717
DpnI GATC 5 cut(s) 170, 410, 465, 641, 804
DpnII GATC 5 cut(s) 168, 408, 463, 639, 802
DraI TTTAAA 1 cut(s) 891
DrdI GACNNNNNNGTC 2 cut(s) 217, 293
DriI GACNNNNNGTC 1 cut(s) 304
DseDI GACNNNNNNGTC 2 cut(s) 217, 293
Eam1104I CTCTTC 2 cut(s) 626, 782
Eam1105I GACNNNNNGTC 1 cut(s) 304
EarI CTCTTC 2 cut(s) 626, 782
EciI GGCGGA 2 cut(s) 310, 340
Eco130I CCWWGG 2 cut(s) 951, 984
Eco147I AGGCCT 1 cut(s) 392
Eco47I GGWCC 2 cut(s) 456, 839
Eco81I CCTNAGG 1 cut(s) 498
Eco88I CYCGRG 2 cut(s) 548, 1010
EcoRI GAATTC 1 cut(s) 608
EcoRII CCWGG 2 cut(s) 690, 834
EcoT14I CCWWGG 2 cut(s) 951, 984
ErhI CCWWGG 2 cut(s) 951, 984
FaeI CATG 3 cut(s) 22, 175, 716
FaiI YATR 5 cut(s) 20, 173, 714, 779, 1033
FaqI GGGAC 2 cut(s) 191, 852
FatI CATG 3 cut(s) 18, 171, 712
FauI CCCGC 4 cut(s) 95, 446, 558, 955
FblI GTMKAC 2 cut(s) 297, 723
Fnu4HI GCNGC 6 cut(s) 476, 494, 663, 990, 999, 1002
FokI GGATG 2 cut(s) 805, 886
Fsp4HI GCNGC 6 cut(s) 476, 494, 663, 990, 999, 1002
GlaI GCGC 1 cut(s) 6
GluI GCNGC 6 cut(s) 476, 494, 663, 990, 999, 1002
GsaI CCCAGC 1 cut(s) 280
HaeIII GGCC 5 cut(s) 55, 64, 176, 392, 938
HapII CCGG 5 cut(s) 23, 52, 773, 849, 935
HgaI GACGC 2 cut(s) 372, 965
HhaI GCGC 1 cut(s) 7
Hin1II CATG 3 cut(s) 22, 175, 716
Hin6I GCGC 1 cut(s) 5
HinP1I GCGC 1 cut(s) 5
HincII GTYRAC 2 cut(s) 222, 298
HindII GTYRAC 2 cut(s) 222, 298
HpaII CCGG 5 cut(s) 23, 52, 773, 849, 935
HphI GGTGA 1 cut(s) 921
Hpy166II GTNNAC 4 cut(s) 183, 222, 298, 724
Hpy188I TCNGA 5 cut(s) 388, 460, 487, 518, 588
Hpy188III TCNNGA 3 cut(s) 208, 701, 806
Hpy8I GTNNAC 4 cut(s) 183, 222, 298, 724
Hpy99I CGWCG 7 cut(s) 239, 242, 245, 299, 388, 464, 487
HpyAV CCTTC 6 cut(s) 301, 403, 414, 550, 733, 793
HpyCH4IV ACGT 1 cut(s) 218
HpyCH4V TGCA 3 cut(s) 32, 122, 539
HpyF10VI GCNNNNNNNGC 9 cut(s) 38, 61, 389, 853, 862, 956, 995, 998, 1022
HpyF3I CTNAG 5 cut(s) 186, 375, 498, 515, 717
HpySE526I ACGT 1 cut(s) 218
Hsp92II CATG 3 cut(s) 22, 175, 716
HspAI GCGC 1 cut(s) 5
KroI GCCGGC 2 cut(s) 51, 772
KroNI GCCGGC 2 cut(s) 53, 774
KspI CCGCGG 1 cut(s) 91
Kzo9I GATC 5 cut(s) 168, 408, 463, 639, 802
LmnI GCTCC 2 cut(s) 353, 982
Lsp1109I GCAGC 4 cut(s) 480, 649, 1001, 1013
LweI GCATC 2 cut(s) 352, 480
MaeII ACGT 1 cut(s) 218
MaeIII GTNAC 1 cut(s) 254
MalI GATC 5 cut(s) 170, 410, 465, 641, 804
MboI GATC 5 cut(s) 168, 408, 463, 639, 802
MboII GAAGA 9 cut(s) 206, 209, 331, 643, 649, 796, 799, 808, 1020
MfeI CAATTG 2 cut(s) 744, 993
MluCI AATT 4 cut(s) 540, 608, 744, 993
MlyI GAGTC 6 cut(s) 158, 194, 261, 281, 311, 314
MmeI TCCRAC 3 cut(s) 366, 465, 483
MroNI GCCGGC 2 cut(s) 51, 772
MroXI GAANNNNTTC 1 cut(s) 686
MseI TTAA 2 cut(s) 890, 921
MspA1I CMGCKG 1 cut(s) 90
MspCI CTTAAG 1 cut(s) 920
MspI CCGG 5 cut(s) 23, 52, 773, 849, 935
MspR9I CCNGG 3 cut(s) 692, 836, 849
MunI CAATTG 2 cut(s) 744, 993
Mva1269I GAATGC 1 cut(s) 541
MvaI CCWGG 2 cut(s) 692, 836
MvnI CGCG 1 cut(s) 90
MwoI GCNNNNNNNGC 9 cut(s) 38, 61, 389, 853, 862, 956, 995, 998, 1022
NaeI GCCGGC 2 cut(s) 53, 774
NciI CCSGG 1 cut(s) 849
NdeII GATC 5 cut(s) 168, 408, 463, 639, 802
NgoMIV GCCGGC 2 cut(s) 51, 772
NlaIII CATG 3 cut(s) 22, 175, 716
NlaIV GGNNCC 5 cut(s) 349, 457, 771, 840, 939
NmeAIII GCCGAG 1 cut(s) 114
PaeR7I CTCGAG 1 cut(s) 548
PceI AGGCCT 1 cut(s) 392
PcsI WCGNNNNNNNCGW 3 cut(s) 291, 300, 351
PctI GAATGC 1 cut(s) 541
PdiI GCCGGC 2 cut(s) 53, 774
PdmI GAANNNNTTC 1 cut(s) 686
PfeI GAWTC 4 cut(s) 282, 329, 419, 621
PflFI GACNNNGTC 1 cut(s) 203
PkrI GCNGC 6 cut(s) 477, 495, 664, 991, 1000, 1003
PleI GAGTC 6 cut(s) 158, 194, 261, 281, 311, 313
PpsI GAGTC 6 cut(s) 158, 194, 261, 281, 311, 313
Psp6I CCWGG 2 cut(s) 690, 834
PspFI CCCAGC 1 cut(s) 276
PspGI CCWGG 2 cut(s) 690, 834
PspN4I GGNNCC 5 cut(s) 349, 457, 771, 840, 939
PspPI GGNCC 5 cut(s) 54, 62, 456, 839, 937
PspXI VCTCGAGB 1 cut(s) 548
PstI CTGCAG 1 cut(s) 34
PsyI GACNNNGTC 1 cut(s) 203
RsaI GTAC 2 cut(s) 157, 970
RsaNI GTAC 2 cut(s) 156, 969
SacII CCGCGG 1 cut(s) 91
SalI GTCGAC 1 cut(s) 296
SaqAI TTAA 2 cut(s) 890, 921
SatI GCNGC 6 cut(s) 476, 494, 663, 990, 999, 1002
Sau3AI GATC 5 cut(s) 168, 408, 463, 639, 802
Sau96I GGNCC 5 cut(s) 54, 62, 456, 839, 937
ScaI AGTACT 1 cut(s) 970
SchI GAGTC 6 cut(s) 158, 194, 261, 281, 311, 314
ScrFI CCNGG 3 cut(s) 692, 836, 849
SfaNI GCATC 2 cut(s) 352, 480
SfcI CTRYAG 3 cut(s) 30, 777, 1017
SfiI GGCCNNNNNGGCC 1 cut(s) 61
Sfr274I CTCGAG 1 cut(s) 548
Sfr303I CCGCGG 1 cut(s) 91
SgrBI CCGCGG 1 cut(s) 91
SinI GGWCC 2 cut(s) 456, 839
SlaI CTCGAG 1 cut(s) 548
SmlI CTYRAG 3 cut(s) 311, 548, 920
SmoI CTYRAG 3 cut(s) 311, 548, 920
Sse9I AATT 4 cut(s) 540, 608, 744, 993
SseBI AGGCCT 1 cut(s) 392
StuI AGGCCT 1 cut(s) 392
StyD4I CCNGG 3 cut(s) 690, 834, 847
StyI CCWWGG 2 cut(s) 951, 984
TaiI ACGT 1 cut(s) 221
TaqI TCGA 8 cut(s) 167, 234, 285, 297, 407, 422, 549, 594
TasI AATT 4 cut(s) 540, 608, 744, 993
TatI WGTACW 2 cut(s) 155, 968
TauI GCSGC 2 cut(s) 478, 1001
TfiI GAWTC 4 cut(s) 282, 329, 419, 621
Tru1I TTAA 2 cut(s) 890, 921
Tru9I TTAA 2 cut(s) 890, 921
TseI GCWGC 4 cut(s) 493, 662, 989, 1001
TspDTI ATGAA 3 cut(s) 621, 701, 1020
TspGWI ACGGA 2 cut(s) 193, 471
Tth111I GACNNNGTC 1 cut(s) 203
Vha464I CTTAAG 1 cut(s) 920
VpaK11BI GGWCC 2 cut(s) 456, 839
XapI RAATTY 1 cut(s) 608
XhoI CTCGAG 1 cut(s) 548
XmiI GTMKAC 2 cut(s) 297, 723
XmnI GAANNNNTTC 1 cut(s) 686
ZrmI AGTACT 1 cut(s) 970
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.