Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0002423

Physical Location & Seq

Genomic Coordinates Forward (+)

9095102 .. 9103079

Gene Structure 7978 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1048400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 741 bp

ATGGCCTCGTTCCCTCAGCCCGAAGACGACTCGGTCCCGACCACCGGCTCAACTCGATCGTTCGACGACGACGGTTGGCTACGACCCCAGACCCTCCTCCCAGTGATTCGACTCCTTCGTCGACTCCGAGTCGCTCAGGGTCTCCGCCACGGATTCCCCAATCTTCCACGGCTCCGCCGCATTTCGCTCGGCATTTCGCTCATCAGTGTACTTGACTTAATCATGGCCTCGTTCACTCAGCCCGAAGACGACTCGGTCCCGACCACCGGCTCAACTCGCCCGTTCGACGACGACGGTTACCTGGGCTACGACCCCCGACTCTCCTCCCAGCGATTTGACTCCTTCGTCGACTCCGAGTCGTTCAAGGATTCCGCCACCGATTCCCCAATCTTCCACGGCTCCGCCGCAGACGACGCTTTCGCCACTCAGCCGGCGTCGGAGGCCTTCTCTCCTCCGTCGATCTACGCCGAATCGAACGGCCAGGGCTTTGATGGAGGGTTTGGCGGGTCCGACGATCCCATTTTGCCGCCTCCGTCGGAGATGCTGCCTGAGGAGGGCTTCGCTCTCAGAGAATGGAGGAGGCAGAATGCGATTCATCTCGAGGAGAAGGAGAAGAGAGAAAAGGAGTTGTTGGTTCAAATAATTGAGGAAGCAGATGAATTCAAGCTGGGATTCTACCAGAAGAGGAAGATCACTACTGAAAATAACAAGGCTGCGAACAGGGAAAGGGAGAAGGTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0006897 GO:0006898 GO:0008150 GO:0009504 GO:0009507 GO:0009524 GO:0009526 GO:0009536 GO:0009941 GO:0012506 GO:0016020 GO:0016192 GO:0030117 GO:0030118 GO:0030120 GO:0030125 GO:0030135 GO:0030136 GO:0030276 GO:0030659 GO:0030662 GO:0030665 GO:0031090 GO:0031410 GO:0031967 GO:0031975 GO:0031982 GO:0032050 GO:0032991 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048475 GO:0051179 GO:0051234 GO:0071944 GO:0072583 GO:0097708 GO:0098588 GO:0098657 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04142 ko04144 ko04721 ko04961 ko05016 ko05100 map04142 map04144 map04721 map04961 map05016 map05100

Pfam Domains

Protein Families

Clathrin_lg_ch

Protein Analysis

247

Amino Acids

27.55

Weight (kDa)

4.76

Isoelectric Point (pI)

71.57

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002423)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40060
fragaria_vesca	FvH4_4g08020 FvH4_7g24260
malus_domestica	MD00G1024200.v1.1 MD00G1047100.v1.1 MD00G1047900.v1.1 MD00G1048400.v1.1 MD00G1062700.v1.1 MD01G1132200.v1.1 MD01G1150700.v1.1 MD01G1152000.v1.1 MD05G1333900.v1.1 MD07G1216800.v1.1 MD07G1219900.v1.1
prunus_persica	Prupe.2G248500_v2.0.a1
pyrus_communis	pycom01g16830 pycom01g16850 pycom01g16880 pycom07g19900 pycom11g19450
rosa_chinensis	RchiOBHm_Chr1g0369851
rosa_laevigata	RLG00000027088 RLG00000027098
rosa_multiflora	Rmu_co8474619.1_g000001 Rmu_sc0008140.1_g000010
rosa_roxburghii	Rroxscaffold_3G00232620 Rroxscaffold_4G00286940 Rroxscaffold_4G00287110 Rroxscaffold_4G00322920
rosa_rugosa	Rorug01G0352700
rosa_samantha	Rh1AG194100 Rh1AG361200 Rh1BG178100 Rh1BG324900 Rh1CG179000 Rh1CG338100 Rh1DG087000 Rh1DG207800 Rh1DG355300
rosa_wichuraiana	Rw0G015470 Rw1G031810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	4 cut(s)	32, 117, 254, 344
AccI	GTMKAC	2 cut(s)	121, 348
AciI	CCGC	8 cut(s)	145, 175, 178, 372, 402, 405, 504, 527
AclWI	GGATC	1 cut(s)	509
AcoI	YGGCCR	1 cut(s)	478
AcsI	RAATTY	1 cut(s)	659
AcyI	GRCGYC	1 cut(s)	434
AfaI	GTAC	1 cut(s)	210
AfiI	CCNNNNNNNGG	3 cut(s)	44, 266, 554
AgsI	TTSAA	3 cut(s)	364, 638, 664
AhdI	GACNNNNNGTC	2 cut(s)	128, 355
AjnI	CCWGG	2 cut(s)	300, 480
AluBI	AGCT	1 cut(s)	667
AluI	AGCT	1 cut(s)	667
Alw26I	GTCTC	1 cut(s)	146
AlwI	GGATC	1 cut(s)	509
Ama87I	CYCGRG	1 cut(s)	599
AoxI	GGCC	4 cut(s)	3, 225, 441, 478
ApeKI	GCWGC	2 cut(s)	544, 713
ApoI	RAATTY	1 cut(s)	659
ArsI	GACNNNNNNTTYG	2 cut(s)	401, 433
AspS9I	GGNCC	3 cut(s)	34, 256, 507
AvaI	CYCGRG	1 cut(s)	599
AvaII	GGWCC	3 cut(s)	34, 256, 507
AxyI	CCTNAGG	1 cut(s)	549
BbsI	GAAGAC	2 cut(s)	30, 252
BbvCI	CCTCAGC	1 cut(s)	15
BbvI	GCAGC	2 cut(s)	531, 700
BccI	CCATC	1 cut(s)	485
BceAI	ACGGC	3 cut(s)	185, 412, 493
BcgI	CGANNNNNNTGC	2 cut(s)	169, 203
BciT130I	CCWGG	2 cut(s)	302, 482
BcoDI	GTCTC	1 cut(s)	146
BisI	GCNGC	5 cut(s)	178, 405, 527, 545, 714
BlsI	GCNGC	5 cut(s)	179, 406, 528, 546, 715
Bme1390I	CCNGG	2 cut(s)	302, 482
Bme18I	GGWCC	3 cut(s)	34, 256, 507
BmeRI	GACNNNNNGTC	2 cut(s)	128, 355
BmeT110I	CYCGRG	1 cut(s)	599
BmgT120I	GGNCC	3 cut(s)	34, 256, 507
BmiI	GGNNCC	5 cut(s)	36, 173, 258, 400, 508
BmrFI	CCNGG	2 cut(s)	302, 482
BmrI	ACTGGG	1 cut(s)	95
BmsI	GCATC	1 cut(s)	531
BmuI	ACTGGG	1 cut(s)	95
BpiI	GAAGAC	2 cut(s)	30, 252
BplI	GAGNNNNNCTC	2 cut(s)	431, 463
Bpu10I	CCTNAGC	2 cut(s)	15, 135
BsaHI	GRCGYC	1 cut(s)	434
BsaI	GGTCTC	1 cut(s)	146
BsaJI	CCNNGG	5 cut(s)	148, 167, 301, 394, 481
Bsc4I	CCNNNNNNNGG	3 cut(s)	44, 266, 554
Bse118I	RCCGGY	3 cut(s)	44, 266, 430
Bse1I	ACTGG	1 cut(s)	101
Bse21I	CCTNAGG	1 cut(s)	549
BseBI	CCWGG	2 cut(s)	302, 482
BseDI	CCNNGG	5 cut(s)	148, 167, 301, 394, 481
BseLI	CCNNNNNNNGG	3 cut(s)	44, 266, 554
BseMII	CTCAG	6 cut(s)	29, 149, 251, 440, 540, 580
BseNI	ACTGG	1 cut(s)	101
BseRI	GAGGAG	6 cut(s)	86, 313, 441, 566, 592, 617
BseXI	GCAGC	2 cut(s)	531, 700
BseYI	CCCAGC	2 cut(s)	327, 667
Bsh1285I	CGRYCG	1 cut(s)	59
BshFI	GGCC	4 cut(s)	5, 227, 443, 480
BsiEI	CGRYCG	1 cut(s)	59
BsiHKCI	CYCGRG	1 cut(s)	599
BsiSI	CCGG	3 cut(s)	45, 267, 431
BslFI	GGGAC	2 cut(s)	20, 242
BslI	CCNNNNNNNGG	3 cut(s)	44, 266, 554
BsmAI	GTCTC	1 cut(s)	146
BsmFI	GGGAC	2 cut(s)	20, 242
BsmI	GAATGC	1 cut(s)	592
BsnI	GGCC	4 cut(s)	5, 227, 443, 480
Bso31I	GGTCTC	1 cut(s)	146
BsoBI	CYCGRG	1 cut(s)	599
Bsp143I	GATC	4 cut(s)	56, 459, 514, 690
BspACI	CCGC	8 cut(s)	145, 175, 178, 372, 402, 405, 504, 527
BspANI	GGCC	4 cut(s)	5, 227, 443, 480
BspCNI	CTCAG	6 cut(s)	28, 148, 250, 439, 541, 579
BspLI	GGNNCC	5 cut(s)	36, 173, 258, 400, 508
BspPI	GGATC	1 cut(s)	509
BspTNI	GGTCTC	1 cut(s)	146
BsrFI	RCCGGY	3 cut(s)	44, 266, 430
BsrI	ACTGG	1 cut(s)	101
BssAI	RCCGGY	3 cut(s)	44, 266, 430
BssECI	CCNNGG	5 cut(s)	148, 167, 301, 394, 481
BssMI	GATC	4 cut(s)	56, 459, 514, 690
BssNI	GRCGYC	1 cut(s)	434
Bst2UI	CCWGG	2 cut(s)	302, 482
Bst4CI	ACNGT	2 cut(s)	74, 296
Bst6I	CTCTTC	2 cut(s)	608, 677
BstACI	GRCGYC	1 cut(s)	434
BstC8I	GCNNGC	1 cut(s)	432
BstDEI	CTNAG	6 cut(s)	15, 135, 237, 426, 549, 566
BstDSI	CCRYGG	3 cut(s)	148, 167, 394
BstEII	GGTNACC	1 cut(s)	296
BstKTI	GATC	4 cut(s)	59, 462, 517, 693
BstMAI	GTCTC	1 cut(s)	146
BstMBI	GATC	4 cut(s)	56, 459, 514, 690
BstMCI	CGRYCG	1 cut(s)	59
BstMWI	GCNNNNNNNGC	3 cut(s)	276, 413, 440
BstNI	CCWGG	2 cut(s)	302, 482
BstPI	GGTNACC	1 cut(s)	296
BstSCI	CCNGG	2 cut(s)	300, 480
BstV1I	GCAGC	2 cut(s)	531, 700
BstV2I	GAAGAC	2 cut(s)	30, 252
Bsu36I	CCTNAGG	1 cut(s)	549
BsuRI	GGCC	4 cut(s)	5, 227, 443, 480
BtgI	CCRYGG	3 cut(s)	148, 167, 394
BtsIMutI	CAGTG	2 cut(s)	108, 211
Cac8I	GCNNGC	1 cut(s)	432
Cfr10I	RCCGGY	3 cut(s)	44, 266, 430
Cfr13I	GGNCC	3 cut(s)	34, 256, 507
CseI	GACGC	2 cut(s)	422, 423
Csp6I	GTAC	1 cut(s)	209
CviAII	CATG	1 cut(s)	223
CviQI	GTAC	1 cut(s)	209
DdeI	CTNAG	6 cut(s)	15, 135, 237, 426, 549, 566
DpnI	GATC	4 cut(s)	58, 461, 516, 692
DpnII	GATC	4 cut(s)	56, 459, 514, 690
DrdI	GACNNNNNNGTC	4 cut(s)	32, 117, 254, 344
DriI	GACNNNNNGTC	2 cut(s)	128, 355
DseDI	GACNNNNNNGTC	4 cut(s)	32, 117, 254, 344
EaeI	YGGCCR	1 cut(s)	478
Eam1104I	CTCTTC	2 cut(s)	608, 677
Eam1105I	GACNNNNNGTC	2 cut(s)	128, 355
EarI	CTCTTC	2 cut(s)	608, 677
EciI	GGCGGA	4 cut(s)	134, 164, 361, 391
Eco147I	AGGCCT	1 cut(s)	443
Eco31I	GGTCTC	1 cut(s)	146
Eco47I	GGWCC	3 cut(s)	34, 256, 507
Eco81I	CCTNAGG	1 cut(s)	549
Eco88I	CYCGRG	1 cut(s)	599
Eco91I	GGTNACC	1 cut(s)	296
EcoO65I	GGTNACC	1 cut(s)	296
EcoRI	GAATTC	1 cut(s)	659
EcoRII	CCWGG	2 cut(s)	300, 480
FaeI	CATG	1 cut(s)	226
FaiI	YATR	1 cut(s)	224
FaqI	GGGAC	2 cut(s)	20, 242
FatI	CATG	1 cut(s)	222
FauI	CCCGC	1 cut(s)	497
FblI	GTMKAC	2 cut(s)	121, 348
Fnu4HI	GCNGC	5 cut(s)	178, 405, 527, 545, 714
Fsp4HI	GCNGC	5 cut(s)	178, 405, 527, 545, 714
GluI	GCNGC	5 cut(s)	178, 405, 527, 545, 714
GsaI	CCCAGC	2 cut(s)	331, 671
HaeIII	GGCC	4 cut(s)	5, 227, 443, 480
HapII	CCGG	3 cut(s)	45, 267, 431
HgaI	GACGC	2 cut(s)	422, 423
Hin1I	GRCGYC	1 cut(s)	434
Hin1II	CATG	1 cut(s)	226
HincII	GTYRAC	2 cut(s)	122, 349
HindII	GTYRAC	2 cut(s)	122, 349
HpaII	CCGG	3 cut(s)	45, 267, 431
Hpy166II	GTNNAC	4 cut(s)	122, 209, 234, 349
Hpy188I	TCNGA	6 cut(s)	128, 355, 439, 511, 538, 569
Hpy188III	TCNNGA	3 cut(s)	37, 259, 599
Hpy8I	GTNNAC	4 cut(s)	122, 209, 234, 349
HpyAV	CCTTC	5 cut(s)	125, 352, 454, 601, 727
HpyCH4III	ACNGT	2 cut(s)	74, 296
HpyF10VI	GCNNNNNNNGC	3 cut(s)	276, 413, 440
HpyF3I	CTNAG	6 cut(s)	15, 135, 237, 426, 549, 566
Hsp92I	GRCGYC	1 cut(s)	434
Hsp92II	CATG	1 cut(s)	226
KroI	GCCGGC	1 cut(s)	430
KroNI	GCCGGC	1 cut(s)	432
Kzo9I	GATC	4 cut(s)	56, 459, 514, 690
LmnI	GCTCC	2 cut(s)	177, 404
Lsp1109I	GCAGC	2 cut(s)	531, 700
LweI	GCATC	1 cut(s)	531
MaeIII	GTNAC	1 cut(s)	296
MalI	GATC	4 cut(s)	58, 461, 516, 692
MboI	GATC	4 cut(s)	56, 459, 514, 690
MboII	GAAGA	7 cut(s)	35, 155, 257, 382, 625, 694, 700
MluCI	AATT	2 cut(s)	642, 659
MlyI	GAGTC	9 cut(s)	23, 105, 117, 138, 245, 312, 332, 344, 365
MmeI	TCCRAC	3 cut(s)	417, 516, 534
MroNI	GCCGGC	1 cut(s)	430
MseI	TTAA	1 cut(s)	218
MspI	CCGG	3 cut(s)	45, 267, 431
MspR9I	CCNGG	2 cut(s)	302, 482
Mva1269I	GAATGC	1 cut(s)	592
MvaI	CCWGG	2 cut(s)	302, 482
MwoI	GCNNNNNNNGC	3 cut(s)	276, 413, 440
NaeI	GCCGGC	1 cut(s)	432
NdeII	GATC	4 cut(s)	56, 459, 514, 690
NgoMIV	GCCGGC	1 cut(s)	430
NlaIII	CATG	1 cut(s)	226
NlaIV	GGNNCC	5 cut(s)	36, 173, 258, 400, 508
NmeAIII	GCCGAG	1 cut(s)	168
PaeR7I	CTCGAG	1 cut(s)	599
PceI	AGGCCT	1 cut(s)	443
PcsI	WCGNNNNNNNCGW	3 cut(s)	115, 124, 351
PctI	GAATGC	1 cut(s)	592
PdiI	GCCGGC	1 cut(s)	432
PfeI	GAWTC	7 cut(s)	106, 153, 368, 380, 470, 592, 672
PflFI	GACNNNGTC	2 cut(s)	32, 254
PkrI	GCNGC	5 cut(s)	179, 406, 528, 546, 715
Ple19I	CGATCG	1 cut(s)	59
PleI	GAGTC	9 cut(s)	23, 105, 117, 137, 245, 312, 332, 344, 364
PpsI	GAGTC	9 cut(s)	23, 105, 117, 137, 245, 312, 332, 344, 364
Psp6I	CCWGG	2 cut(s)	300, 480
PspEI	GGTNACC	1 cut(s)	296
PspFI	CCCAGC	2 cut(s)	327, 667
PspGI	CCWGG	2 cut(s)	300, 480
PspN4I	GGNNCC	5 cut(s)	36, 173, 258, 400, 508
PspPI	GGNCC	3 cut(s)	34, 256, 507
PsyI	GACNNNGTC	2 cut(s)	32, 254
PvuI	CGATCG	1 cut(s)	59
RsaI	GTAC	1 cut(s)	210
RsaNI	GTAC	1 cut(s)	209
SalI	GTCGAC	2 cut(s)	120, 347
SaqAI	TTAA	1 cut(s)	218
SatI	GCNGC	5 cut(s)	178, 405, 527, 545, 714
Sau3AI	GATC	4 cut(s)	56, 459, 514, 690
Sau96I	GGNCC	3 cut(s)	34, 256, 507
SchI	GAGTC	9 cut(s)	23, 105, 117, 138, 245, 312, 332, 344, 365
ScrFI	CCNGG	2 cut(s)	302, 482
SetI	ASST	3 cut(s)	303, 669, 738
SfaNI	GCATC	1 cut(s)	531
Sfr274I	CTCGAG	1 cut(s)	599
SinI	GGWCC	3 cut(s)	34, 256, 507
SlaI	CTCGAG	1 cut(s)	599
SmlI	CTYRAG	1 cut(s)	599
SmoI	CTYRAG	1 cut(s)	599
Sse9I	AATT	2 cut(s)	642, 659
SseBI	AGGCCT	1 cut(s)	443
SsiI	CCGC	8 cut(s)	145, 175, 178, 372, 402, 405, 504, 527
StuI	AGGCCT	1 cut(s)	443
StyD4I	CCNGG	2 cut(s)	300, 480
TaaI	ACNGT	2 cut(s)	74, 296
TaqI	TCGA	9 cut(s)	55, 63, 109, 121, 285, 348, 458, 473, 600
TaqII	GACCGA	2 cut(s)	22, 244
TasI	AATT	2 cut(s)	642, 659
TatI	WGTACW	1 cut(s)	208
TauI	GCSGC	3 cut(s)	180, 407, 529
TfiI	GAWTC	7 cut(s)	106, 153, 368, 380, 470, 592, 672
Tru1I	TTAA	1 cut(s)	218
Tru9I	TTAA	1 cut(s)	218
TscAI	CASTG	2 cut(s)	108, 211
TseI	GCWGC	2 cut(s)	544, 713
TspDTI	ATGAA	2 cut(s)	584, 672
TspGWI	ACGGA	3 cut(s)	165, 444, 522
TspRI	CASTG	2 cut(s)	108, 211
Tth111I	GACNNNGTC	2 cut(s)	32, 254
VpaK11BI	GGWCC	3 cut(s)	34, 256, 507
XapI	RAATTY	1 cut(s)	659
XcmI	CCANNNNNNNNNTGG	1 cut(s)	488
XhoI	CTCGAG	1 cut(s)	599
XmiI	GTMKAC	2 cut(s)	121, 348

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.