Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb7

Orthogroup ID

OG0002423

Physical Location & Seq

Genomic Coordinates Reverse (-)

18750621 .. 18753418

Gene Structure 2798 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_7g24260.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 723 bp

ATGTCCTCCTCCTCCTTCACTCTCCCTGATGACGACTCCGTCCCCACCGCCGGGTCAACCCGCCCGTTCGACGACGATGACTACCTCCGCTACGAGCATGACTCCGTAGTAGTAGACGACGTCTTCGCTACGGCTCAGCCGCTCACTGAGCCTCCATCTCCGCCGTCGATCTTCGCTGCCGGATCGAACGATCCGATTCTGCCGGAGATGCCGCCAGAGGAGGGCGCCGCTCTCAGGGAATGGAGAAGGCAGAATGCAATTCATCTGGCGGAGAAGGAGAAGAGAGAAAAGGAGTTGTTGAGCCAAATCATCGAGGAAGCTGAAGAGTTCAAGGTTGAATTCTACCAGAAGAGGAAGATCGCTTCTGAGAATAACAAAGCTGCTAACAGGGAAAAAGAGAAGATGTTCGTTGCCAGTCAAGAGAAGTTTCATGCTGAGGTAGACAAGAATTACTGGAAGGCAGTTGCAGATCTCATTCCAAATGAGGTGCCAGCTATAGAGAAGAGAGGGAGGAAGGATCAGGAAAAGAAGCCTTCCGTAGTTGTTGTTCAAGGTCCAAAACCTGGTAAGCCAACTGAGCTCTCGCGGATGAGGCAGATTCTTCTGAAATTGAAGCATAATACGCCTCCTCACCTAAAGCCTTTGCCACCAGCACCAGTTGCTGCCCCTGAGGCTGTTGCTGCTACTGTGGCAGTTGCACCTGAGGCTATATCTGCTGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0006897 GO:0006898 GO:0008150 GO:0009504 GO:0009507 GO:0009524 GO:0009526 GO:0009536 GO:0009941 GO:0012506 GO:0016020 GO:0016192 GO:0030117 GO:0030118 GO:0030120 GO:0030125 GO:0030135 GO:0030136 GO:0030276 GO:0030659 GO:0030662 GO:0030665 GO:0031090 GO:0031410 GO:0031967 GO:0031975 GO:0031982 GO:0032050 GO:0032991 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048475 GO:0051179 GO:0051234 GO:0071944 GO:0072583 GO:0097708 GO:0098588 GO:0098657 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04142 ko04144 ko04721 ko04961 ko05016 ko05100 map04142 map04144 map04721 map04961 map05016 map05100

Pfam Domains

Protein Families

Clathrin_lg_ch

Protein Analysis

241

Amino Acids

26.65

Weight (kDa)

5.42

Isoelectric Point (pI)

61.84

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Clathrin_lg_ch	PF01086	72 - 176	4e-09	Clathrin light chain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002423)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40060
fragaria_vesca	FvH4_4g08020 FvH4_7g24260
malus_domestica	MD00G1024200.v1.1 MD00G1047100.v1.1 MD00G1047900.v1.1 MD00G1048400.v1.1 MD00G1062700.v1.1 MD01G1132200.v1.1 MD01G1150700.v1.1 MD01G1152000.v1.1 MD05G1333900.v1.1 MD07G1216800.v1.1 MD07G1219900.v1.1
prunus_persica	Prupe.2G248500_v2.0.a1
pyrus_communis	pycom01g16830 pycom01g16850 pycom01g16880 pycom07g19900 pycom11g19450
rosa_chinensis	RchiOBHm_Chr1g0369851
rosa_laevigata	RLG00000027088 RLG00000027098
rosa_multiflora	Rmu_co8474619.1_g000001 Rmu_sc0008140.1_g000010
rosa_roxburghii	Rroxscaffold_3G00232620 Rroxscaffold_4G00286940 Rroxscaffold_4G00287110 Rroxscaffold_4G00322920
rosa_rugosa	Rorug01G0352700
rosa_samantha	Rh1AG194100 Rh1AG361200 Rh1BG178100 Rh1BG324900 Rh1CG179000 Rh1CG338100 Rh1DG087000 Rh1DG207800 Rh1DG355300
rosa_wichuraiana	Rw0G015470 Rw1G031810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	38
AatII	GACGTC	1 cut(s)	123
AccB1I	GGYRCC	2 cut(s)	224, 487
AccB7I	CCANNNNNTGG	1 cut(s)	563
AccBSI	CCGCTC	2 cut(s)	142, 230
AccI	GTMKAC	2 cut(s)	114, 441
AccII	CGCG	1 cut(s)	586
AciI	CCGC	9 cut(s)	48, 61, 88, 140, 161, 212, 228, 269, 586
AclWI	GGATC	3 cut(s)	185, 190, 525
AcsI	RAATTY	1 cut(s)	338
AcuI	CTGAAG	1 cut(s)	342
AcyI	GRCGYC	2 cut(s)	120, 225
AfiI	CCNNNNNNNGG	5 cut(s)	50, 51, 221, 234, 563
AgsI	TTSAA	4 cut(s)	331, 338, 551, 613
AjnI	CCWGG	1 cut(s)	562
AluBI	AGCT	4 cut(s)	320, 380, 494, 580
AluI	AGCT	4 cut(s)	320, 380, 494, 580
Alw21I	GWGCWC	1 cut(s)	582
AlwI	GGATC	3 cut(s)	185, 190, 525
AlwNI	CAGNNNCTG	1 cut(s)	662
ApeKI	GCWGC	5 cut(s)	176, 380, 662, 680, 716
ApoI	RAATTY	1 cut(s)	338
ArsI	GACNNNNNNTTYG	2 cut(s)	107, 139
Asp700I	GAANNNNTTC	1 cut(s)	404
AspLEI	GCGC	1 cut(s)	227
AspS9I	GGNCC	1 cut(s)	554
AsuC2I	CCSGG	1 cut(s)	52
AsuHPI	GGTGA	1 cut(s)	623
AvaII	GGWCC	1 cut(s)	554
AxyI	CCTNAGG	2 cut(s)	669, 702
BanI	GGYRCC	2 cut(s)	224, 487
BanII	GRGCYC	1 cut(s)	582
BbsI	GAAGAC	1 cut(s)	115
Bbv12I	GWGCWC	1 cut(s)	582
BbvCI	CCTCAGC	1 cut(s)	435
BbvI	GCAGC	5 cut(s)	163, 367, 649, 667, 703
BccI	CCATC	1 cut(s)	163
BceAI	ACGGC	2 cut(s)	147, 148
BciT130I	CCWGG	1 cut(s)	564
BcnI	CCSGG	1 cut(s)	52
BfmI	CTRYAG	1 cut(s)	495
BfoI	RGCGCY	1 cut(s)	228
BglI	GCCNNNNNGGC	1 cut(s)	671
BglII	AGATCT	1 cut(s)	469
BisI	GCNGC	8 cut(s)	140, 177, 212, 228, 381, 663, 681, 717
BlpI	GCTNAGC	1 cut(s)	135
BlsI	GCNGC	8 cut(s)	141, 178, 213, 229, 382, 664, 682, 718
Bme1390I	CCNGG	2 cut(s)	52, 564
Bme18I	GGWCC	1 cut(s)	554
BmgT120I	GGNCC	1 cut(s)	554
BmiI	GGNNCC	2 cut(s)	226, 489
BmrFI	CCNGG	2 cut(s)	52, 564
BmsI	GCATC	1 cut(s)	198
BpiI	GAAGAC	1 cut(s)	115
BplI	GAGNNNNNCTC	2 cut(s)	86, 118
Bpu10I	CCTNAGC	1 cut(s)	435
Bpu1102I	GCTNAGC	1 cut(s)	135
BpuMI	CCSGG	1 cut(s)	52
BsaHI	GRCGYC	2 cut(s)	120, 225
BsaXI	ACNNNNNCTCC	2 cut(s)	136, 166
Bsc4I	CCNNNNNNNGG	5 cut(s)	50, 51, 221, 234, 563
Bse1I	ACTGG	3 cut(s)	414, 458, 656
Bse21I	CCTNAGG	2 cut(s)	669, 702
BseBI	CCWGG	1 cut(s)	564
BseGI	GGATG	1 cut(s)	594
BseLI	CCNNNNNNNGG	5 cut(s)	50, 51, 221, 234, 563
BseMII	CTCAG	8 cut(s)	138, 149, 247, 357, 426, 567, 660, 693
BseNI	ACTGG	3 cut(s)	414, 458, 656
BseRI	GAGGAG	2 cut(s)	233, 618
BseXI	GCAGC	5 cut(s)	163, 367, 649, 667, 703
Bsh1236I	CGCG	1 cut(s)	586
BshNI	GGYRCC	2 cut(s)	224, 487
BsiHKAI	GWGCWC	1 cut(s)	582
BsiSI	CCGG	3 cut(s)	51, 180, 203
BslFI	GGGAC	1 cut(s)	26
BslI	CCNNNNNNNGG	5 cut(s)	50, 51, 221, 234, 563
BsmFI	GGGAC	1 cut(s)	26
BsmI	GAATGC	1 cut(s)	259
Bsp1286I	GDGCHC	1 cut(s)	582
Bsp143I	GATC	6 cut(s)	168, 182, 190, 357, 469, 517
Bsp1720I	GCTNAGC	1 cut(s)	135
BspACI	CCGC	9 cut(s)	48, 61, 88, 140, 161, 212, 228, 269, 586
BspCNI	CTCAG	8 cut(s)	139, 148, 246, 358, 427, 568, 661, 694
BspFNI	CGCG	1 cut(s)	586
BspLI	GGNNCC	2 cut(s)	226, 489
BspPI	GGATC	3 cut(s)	185, 190, 525
BspT107I	GGYRCC	2 cut(s)	224, 487
BsrBI	CCGCTC	2 cut(s)	142, 230
BsrI	ACTGG	3 cut(s)	414, 458, 656
BssMI	GATC	6 cut(s)	168, 182, 190, 357, 469, 517
BssNI	GRCGYC	2 cut(s)	120, 225
Bst2UI	CCWGG	1 cut(s)	564
Bst4CI	ACNGT	1 cut(s)	688
Bst6I	CTCTTC	4 cut(s)	275, 318, 344, 497
BstACI	GRCGYC	2 cut(s)	120, 225
BstAPI	GCANNNNNTGC	1 cut(s)	659
BstC8I	GCNNGC	1 cut(s)	492
BstDEI	CTNAG	8 cut(s)	135, 147, 233, 366, 435, 576, 669, 702
BstF5I	GGATG	1 cut(s)	594
BstFNI	CGCG	1 cut(s)	586
BstH2I	RGCGCY	1 cut(s)	228
BstHHI	GCGC	1 cut(s)	227
BstKTI	GATC	6 cut(s)	171, 185, 193, 360, 472, 520
BstMBI	GATC	6 cut(s)	168, 182, 190, 357, 469, 517
BstNI	CCWGG	1 cut(s)	564
BstSCI	CCNGG	2 cut(s)	50, 562
BstSFI	CTRYAG	1 cut(s)	495
BstUI	CGCG	1 cut(s)	586
BstV1I	GCAGC	5 cut(s)	163, 367, 649, 667, 703
BstV2I	GAAGAC	1 cut(s)	115
BstX2I	RGATCY	1 cut(s)	469
BstYI	RGATCY	1 cut(s)	469
Bsu36I	CCTNAGG	2 cut(s)	669, 702
BtsCI	GGATG	1 cut(s)	594
BtsIMutI	CAGTG	1 cut(s)	144
Cac8I	GCNNGC	1 cut(s)	492
CaiI	CAGNNNCTG	1 cut(s)	662
CfoI	GCGC	1 cut(s)	227
Cfr13I	GGNCC	1 cut(s)	554
CsiI	ACCWGGT	1 cut(s)	562
CviAII	CATG	2 cut(s)	98, 431
DdeI	CTNAG	8 cut(s)	135, 147, 233, 366, 435, 576, 669, 702
DinI	GGCGCC	1 cut(s)	226
DpnI	GATC	6 cut(s)	170, 184, 192, 359, 471, 519
DpnII	GATC	6 cut(s)	168, 182, 190, 357, 469, 517
DrdI	GACNNNNNNGTC	1 cut(s)	38
DseDI	GACNNNNNNGTC	1 cut(s)	38
Eam1104I	CTCTTC	4 cut(s)	275, 318, 344, 497
EarI	CTCTTC	4 cut(s)	275, 318, 344, 497
EciI	GGCGGA	2 cut(s)	150, 284
Ecl136II	GAGCTC	1 cut(s)	580
Eco24I	GRGCYC	1 cut(s)	582
Eco47I	GGWCC	1 cut(s)	554
Eco53kI	GAGCTC	1 cut(s)	580
Eco57I	CTGAAG	1 cut(s)	342
Eco81I	CCTNAGG	2 cut(s)	669, 702
EcoICRI	GAGCTC	1 cut(s)	580
EcoRI	GAATTC	1 cut(s)	338
EcoRII	CCWGG	1 cut(s)	562
EcoT38I	GRGCYC	1 cut(s)	582
EgeI	GGCGCC	1 cut(s)	226
EheI	GGCGCC	1 cut(s)	226
FaeI	CATG	2 cut(s)	101, 434
FaiI	YATR	5 cut(s)	99, 432, 497, 618, 710
FaqI	GGGAC	1 cut(s)	26
FatI	CATG	2 cut(s)	97, 430
FauI	CCCGC	1 cut(s)	68
FblI	GTMKAC	2 cut(s)	114, 441
Fnu4HI	GCNGC	8 cut(s)	140, 177, 212, 228, 381, 663, 681, 717
FokI	GGATG	1 cut(s)	601
FriOI	GRGCYC	1 cut(s)	582
Fsp4HI	GCNGC	8 cut(s)	140, 177, 212, 228, 381, 663, 681, 717
GlaI	GCGC	1 cut(s)	226
GluI	GCNGC	8 cut(s)	140, 177, 212, 228, 381, 663, 681, 717
HaeII	RGCGCY	1 cut(s)	228
HapII	CCGG	3 cut(s)	51, 180, 203
HhaI	GCGC	1 cut(s)	227
Hin1I	GRCGYC	2 cut(s)	120, 225
Hin1II	CATG	2 cut(s)	101, 434
Hin6I	GCGC	1 cut(s)	225
HinP1I	GCGC	1 cut(s)	225
HincII	GTYRAC	1 cut(s)	57
HindII	GTYRAC	1 cut(s)	57
HinfI	GANTC	4 cut(s)	35, 101, 196, 598
HpaII	CCGG	3 cut(s)	51, 180, 203
HphI	GGTGA	1 cut(s)	623
Hpy166II	GTNNAC	3 cut(s)	57, 115, 442
Hpy188I	TCNGA	3 cut(s)	195, 367, 606
Hpy188III	TCNNGA	2 cut(s)	419, 521
Hpy8I	GTNNAC	3 cut(s)	57, 115, 442
Hpy99I	CGWCG	4 cut(s)	74, 77, 122, 169
HpyAV	CCTTC	6 cut(s)	25, 240, 268, 451, 508, 543
HpyCH4III	ACNGT	1 cut(s)	688
HpyCH4IV	ACGT	1 cut(s)	120
HpyCH4V	TGCA	3 cut(s)	257, 467, 698
HpyF3I	CTNAG	8 cut(s)	135, 147, 233, 366, 435, 576, 669, 702
HpySE526I	ACGT	1 cut(s)	120
Hsp92I	GRCGYC	2 cut(s)	120, 225
Hsp92II	CATG	2 cut(s)	101, 434
HspAI	GCGC	1 cut(s)	225
KasI	GGCGCC	1 cut(s)	224
Kzo9I	GATC	6 cut(s)	168, 182, 190, 357, 469, 517
Lsp1109I	GCAGC	5 cut(s)	163, 367, 649, 667, 703
LweI	GCATC	1 cut(s)	198
MabI	ACCWGGT	1 cut(s)	562
MaeII	ACGT	1 cut(s)	120
MalI	GATC	6 cut(s)	170, 184, 192, 359, 471, 519
MbiI	CCGCTC	2 cut(s)	142, 230
MboI	GATC	6 cut(s)	168, 182, 190, 357, 469, 517
MboII	GAAGA	9 cut(s)	115, 163, 292, 335, 361, 367, 412, 514, 593
MflI	RGATCY	1 cut(s)	469
MhlI	GDGCHC	1 cut(s)	582
MluCI	AATT	4 cut(s)	258, 338, 448, 608
Mly113I	GGCGCC	1 cut(s)	225
MlyI	GAGTC	2 cut(s)	29, 95
MroXI	GAANNNNTTC	1 cut(s)	404
MspI	CCGG	3 cut(s)	51, 180, 203
MspR9I	CCNGG	2 cut(s)	52, 564
Mva1269I	GAATGC	1 cut(s)	259
MvaI	CCWGG	1 cut(s)	564
MvnI	CGCG	1 cut(s)	586
NarI	GGCGCC	1 cut(s)	225
NciI	CCSGG	1 cut(s)	52
NdeII	GATC	6 cut(s)	168, 182, 190, 357, 469, 517
NlaIII	CATG	2 cut(s)	101, 434
NlaIV	GGNNCC	2 cut(s)	226, 489
PcsI	WCGNNNNNNNCGW	1 cut(s)	191
PctI	GAATGC	1 cut(s)	259
PdmI	GAANNNNTTC	1 cut(s)	404
PfeI	GAWTC	2 cut(s)	196, 598
PflFI	GACNNNGTC	2 cut(s)	38, 119
PflMI	CCANNNNNTGG	1 cut(s)	563
PkrI	GCNGC	8 cut(s)	141, 178, 213, 229, 382, 664, 682, 718
PleI	GAGTC	2 cut(s)	29, 95
PluTI	GGCGCC	1 cut(s)	228
PpsI	GAGTC	2 cut(s)	29, 95
Psp124BI	GAGCTC	1 cut(s)	582
Psp6I	CCWGG	1 cut(s)	562
PspGI	CCWGG	1 cut(s)	562
PspN4I	GGNNCC	2 cut(s)	226, 489
PspPI	GGNCC	1 cut(s)	554
PsrI	GAACNNNNNNTAC	2 cut(s)	531, 563
PstNI	CAGNNNCTG	1 cut(s)	662
PsuI	RGATCY	1 cut(s)	469
PsyI	GACNNNGTC	2 cut(s)	38, 119
SacI	GAGCTC	1 cut(s)	582
SatI	GCNGC	8 cut(s)	140, 177, 212, 228, 381, 663, 681, 717
Sau3AI	GATC	6 cut(s)	168, 182, 190, 357, 469, 517
Sau96I	GGNCC	1 cut(s)	554
SchI	GAGTC	2 cut(s)	29, 95
ScrFI	CCNGG	2 cut(s)	52, 564
SduI	GDGCHC	1 cut(s)	582
SexAI	ACCWGGT	1 cut(s)	562
SfaNI	GCATC	1 cut(s)	198
SfcI	CTRYAG	1 cut(s)	495
SfoI	GGCGCC	1 cut(s)	226
SinI	GGWCC	1 cut(s)	554
Sse9I	AATT	4 cut(s)	258, 338, 448, 608
SsiI	CCGC	9 cut(s)	48, 61, 88, 140, 161, 212, 228, 269, 586
SspDI	GGCGCC	1 cut(s)	224
SstI	GAGCTC	1 cut(s)	582
StyD4I	CCNGG	2 cut(s)	50, 562
TaaI	ACNGT	1 cut(s)	688
TaiI	ACGT	1 cut(s)	123
TaqI	TCGA	4 cut(s)	69, 167, 185, 312
TasI	AATT	4 cut(s)	258, 338, 448, 608
TauI	GCSGC	3 cut(s)	142, 214, 230
TfiI	GAWTC	2 cut(s)	196, 598
TscAI	CASTG	1 cut(s)	151
TseI	GCWGC	5 cut(s)	176, 380, 662, 680, 716
TspDTI	ATGAA	2 cut(s)	251, 419
TspGWI	ACGGA	3 cut(s)	28, 94, 526
TspRI	CASTG	1 cut(s)	151
Tth111I	GACNNNGTC	2 cut(s)	38, 119
Van91I	CCANNNNNTGG	1 cut(s)	563
VpaK11BI	GGWCC	1 cut(s)	554
XapI	RAATTY	1 cut(s)	338
XmiI	GTMKAC	2 cut(s)	114, 441
XmnI	GAANNNNTTC	1 cut(s)	404
ZraI	GACGTC	1 cut(s)	121

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.