Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr01

Orthogroup ID

OG0002423

Physical Location & Seq

Genomic Coordinates Forward (+)

24234494 .. 24236599

Gene Structure 2106 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD01G1132200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 891 bp

ATGTCAGTACATTTGTTTGACTCGATCATGGCCTCGTTCACTCAGCCCGAAGACGACTCAGTCCCGCCCACCGTGTCAACTCGCCCATTCGACGACGACGGTTACCTGGGTTACGACCCCCGACTCCCCTCCCAGCCATTCGACTCCTTCGTCGACACCGAGTCGCTCAAGGACTCCGCCACCGATTCCCCAATCTTCCACGGCTCCGCCGCAGGCGATGCTTTCGCCACTCAGCCTGCGTCGGAGGCCTTCTCTCCTCCGTCGATCTACGCCGAATCGAATGGGCAGGGCTTTGATGGAGGTTTTGGCGTGTCCGACGATCCGATTTTGCCGCCTCCGTTGGAGATGCTGCCCGAGGAGGGCTTCGCTCTCAGAGAATGGAGGAGGCAGAATGCAATTCAGCTCGAGGAGAAGGAAAGGCGGGAAAAGGAGTTGTTGGTTCAGATAATCGAGGAAGCAGATGAATTCAAGGTGGGATTCTACCAGAAGAGGAAGATCACATCTGAAAATAACAAGGCTGCTAACAGGGAAAGGGAGAAGCTGTTCCTGGCTAATCAAGAGAAGTTTCATGCTGAGGTAGACAAGAACTACTGGAAGGCAATTGCTGACCTCATTCCAAATGAGGTGCCGGCTATAGAAAAGAAGAGAGGGAAGAAGGATCAGGAAAAGAAGCCATCCATTCTCGTTGTCCAAGGACCAAAGCCCGGAAAGCCAACCGAGCTTTCAAGGATGAGGCAGATACTTTTAAAGTTGAAGCACAATACACCTCCCCACCTTAAGCCTTCACCACCGGCCCCAGCTCCCGCCAAGGATGCAAAACCAAGTACTTCTGCTCCCCCCAAGGCAGCAATTGTCGCAGCTAGCCCCGACGCTGTAGTTGCTGCTTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0006897 GO:0006898 GO:0008150 GO:0009504 GO:0009507 GO:0009524 GO:0009526 GO:0009536 GO:0009941 GO:0012506 GO:0016020 GO:0016192 GO:0030117 GO:0030118 GO:0030120 GO:0030125 GO:0030135 GO:0030136 GO:0030276 GO:0030659 GO:0030662 GO:0030665 GO:0031090 GO:0031410 GO:0031967 GO:0031975 GO:0031982 GO:0032050 GO:0032991 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048475 GO:0051179 GO:0051234 GO:0071944 GO:0072583 GO:0097708 GO:0098588 GO:0098657 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04142 ko04144 ko04721 ko04961 ko05016 ko05100 map04142 map04144 map04721 map04961 map05016 map05100

Pfam Domains

Protein Families

Clathrin_lg_ch

Protein Analysis

297

Amino Acids

32.61

Weight (kDa)

5.33

Isoelectric Point (pI)

60.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Clathrin_lg_ch	PF01086	119 - 228	4e-07	Clathrin light chain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002423)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40060
fragaria_vesca	FvH4_4g08020 FvH4_7g24260
malus_domestica	MD00G1024200.v1.1 MD00G1047100.v1.1 MD00G1047900.v1.1 MD00G1048400.v1.1 MD00G1062700.v1.1 MD01G1132200.v1.1 MD01G1150700.v1.1 MD01G1152000.v1.1 MD05G1333900.v1.1 MD07G1216800.v1.1 MD07G1219900.v1.1
prunus_persica	Prupe.2G248500_v2.0.a1
pyrus_communis	pycom01g16830 pycom01g16850 pycom01g16880 pycom07g19900 pycom11g19450
rosa_chinensis	RchiOBHm_Chr1g0369851
rosa_laevigata	RLG00000027088 RLG00000027098
rosa_multiflora	Rmu_co8474619.1_g000001 Rmu_sc0008140.1_g000010
rosa_roxburghii	Rroxscaffold_3G00232620 Rroxscaffold_4G00286940 Rroxscaffold_4G00287110 Rroxscaffold_4G00322920
rosa_rugosa	Rorug01G0352700
rosa_samantha	Rh1AG194100 Rh1AG361200 Rh1BG178100 Rh1BG324900 Rh1CG179000 Rh1CG338100 Rh1DG087000 Rh1DG207800 Rh1DG355300
rosa_wichuraiana	Rw0G015470 Rw1G031810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	59, 149
AccB1I	GGYRCC	1 cut(s)	625
AccI	GTMKAC	2 cut(s)	153, 579
AciI	CCGC	7 cut(s)	65, 177, 207, 210, 332, 421, 804
AclWI	GGATC	2 cut(s)	314, 666
AcsI	RAATTY	1 cut(s)	464
AfaI	GTAC	2 cut(s)	9, 826
AfiI	CCNNNNNNNGG	2 cut(s)	359, 704
AflII	CTTAAG	1 cut(s)	776
AgsI	TTSAA	3 cut(s)	469, 726, 754
AhdI	GACNNNNNGTC	1 cut(s)	160
AjnI	CCWGG	2 cut(s)	105, 546
AjuI	GAANNNNNNNTTGG	2 cut(s)	706, 738
AloI	GAACNNNNNNTCC	2 cut(s)	527, 559
AluBI	AGCT	5 cut(s)	403, 541, 721, 800, 860
AluI	AGCT	5 cut(s)	403, 541, 721, 800, 860
AlwI	GGATC	2 cut(s)	314, 666
Ama87I	CYCGRG	2 cut(s)	353, 404
AoxI	GGCC	3 cut(s)	30, 246, 792
ApeKI	GCWGC	5 cut(s)	349, 518, 845, 857, 881
ApoI	RAATTY	1 cut(s)	464
Asp700I	GAANNNNTTC	1 cut(s)	542
AspS9I	GGNCC	2 cut(s)	695, 793
AsuC2I	CCSGG	1 cut(s)	705
AsuHPI	GGTGA	1 cut(s)	777
AsuNHI	GCTAGC	1 cut(s)	860
AvaI	CYCGRG	2 cut(s)	353, 404
AvaII	GGWCC	1 cut(s)	695
BanI	GGYRCC	1 cut(s)	625
BbsI	GAAGAC	1 cut(s)	57
BbvCI	CCTCAGC	1 cut(s)	573
BbvI	GCAGC	5 cut(s)	336, 505, 857, 868, 869
BccI	CCATC	2 cut(s)	290, 682
BceAI	ACGGC	1 cut(s)	217
BciT130I	CCWGG	2 cut(s)	107, 548
BcnI	CCSGG	1 cut(s)	705
BfaI	CTAG	1 cut(s)	861
BfmI	CTRYAG	2 cut(s)	633, 873
BfrI	CTTAAG	1 cut(s)	776
BisI	GCNGC	7 cut(s)	210, 332, 350, 519, 846, 858, 882
BlsI	GCNGC	7 cut(s)	211, 333, 351, 520, 847, 859, 883
BmcAI	AGTACT	1 cut(s)	826
Bme1390I	CCNGG	3 cut(s)	107, 548, 705
Bme18I	GGWCC	1 cut(s)	695
BmeRI	GACNNNNNGTC	1 cut(s)	160
BmeT110I	CYCGRG	2 cut(s)	353, 404
BmgT120I	GGNCC	2 cut(s)	695, 793
BmiI	GGNNCC	3 cut(s)	205, 627, 795
BmrFI	CCNGG	3 cut(s)	107, 548, 705
BmsI	GCATC	3 cut(s)	208, 336, 802
BmtI	GCTAGC	1 cut(s)	864
BpiI	GAAGAC	1 cut(s)	57
BplI	GAGNNNNNCTC	2 cut(s)	236, 268
Bpu10I	CCTNAGC	1 cut(s)	573
BpuEI	CTTGAG	1 cut(s)	152
BpuMI	CCSGG	1 cut(s)	705
BsaJI	CCNNGG	6 cut(s)	106, 199, 354, 691, 807, 840
BsaXI	ACNNNNNCTCC	4 cut(s)	527, 557, 817, 847
Bsc4I	CCNNNNNNNGG	2 cut(s)	359, 704
Bse118I	RCCGGY	2 cut(s)	628, 790
Bse1I	ACTGG	1 cut(s)	596
BseBI	CCWGG	2 cut(s)	107, 548
BseDI	CCNNGG	6 cut(s)	106, 199, 354, 691, 807, 840
BseGI	GGATG	3 cut(s)	674, 735, 817
BseLI	CCNNNNNNNGG	2 cut(s)	359, 704
BseMII	CTCAG	5 cut(s)	56, 72, 245, 385, 564
BseNI	ACTGG	1 cut(s)	596
BseRI	GAGGAG	4 cut(s)	246, 371, 397, 422
BseXI	GCAGC	5 cut(s)	336, 505, 857, 868, 869
BseYI	CCCAGC	2 cut(s)	132, 796
BshFI	GGCC	3 cut(s)	32, 248, 794
BshNI	GGYRCC	1 cut(s)	625
BsiHKCI	CYCGRG	2 cut(s)	353, 404
BsiSI	CCGG	3 cut(s)	629, 705, 791
BslFI	GGGAC	1 cut(s)	47
BslI	CCNNNNNNNGG	2 cut(s)	359, 704
BsmFI	GGGAC	1 cut(s)	47
BsmI	GAATGC	1 cut(s)	397
BsnI	GGCC	3 cut(s)	32, 248, 794
BsoBI	CYCGRG	2 cut(s)	353, 404
Bsp143I	GATC	5 cut(s)	24, 264, 319, 495, 658
BspACI	CCGC	7 cut(s)	65, 177, 207, 210, 332, 421, 804
BspANI	GGCC	3 cut(s)	32, 248, 794
BspCNI	CTCAG	5 cut(s)	55, 71, 244, 384, 565
BspLI	GGNNCC	3 cut(s)	205, 627, 795
BspOI	GCTAGC	1 cut(s)	864
BspPI	GGATC	2 cut(s)	314, 666
BspT107I	GGYRCC	1 cut(s)	625
BspTI	CTTAAG	1 cut(s)	776
BsrFI	RCCGGY	2 cut(s)	628, 790
BsrI	ACTGG	1 cut(s)	596
BssAI	RCCGGY	2 cut(s)	628, 790
BssECI	CCNNGG	6 cut(s)	106, 199, 354, 691, 807, 840
BssMI	GATC	5 cut(s)	24, 264, 319, 495, 658
BssT1I	CCWWGG	3 cut(s)	691, 807, 840
Bst2UI	CCWGG	2 cut(s)	107, 548
Bst4CI	ACNGT	2 cut(s)	73, 101
Bst6I	CTCTTC	2 cut(s)	482, 638
BstAFI	CTTAAG	1 cut(s)	776
BstAPI	GCANNNNNTGC	1 cut(s)	218
BstC8I	GCNNGC	4 cut(s)	214, 237, 630, 862
BstDEI	CTNAG	5 cut(s)	42, 58, 231, 371, 573
BstDSI	CCRYGG	1 cut(s)	199
BstEII	GGTNACC	1 cut(s)	101
BstF5I	GGATG	3 cut(s)	674, 735, 817
BstKTI	GATC	5 cut(s)	27, 267, 322, 498, 661
BstMBI	GATC	5 cut(s)	24, 264, 319, 495, 658
BstMWI	GCNNNNNNNGC	7 cut(s)	218, 245, 709, 718, 812, 854, 878
BstNI	CCWGG	2 cut(s)	107, 548
BstPI	GGTNACC	1 cut(s)	101
BstSCI	CCNGG	3 cut(s)	105, 546, 703
BstSFI	CTRYAG	2 cut(s)	633, 873
BstV1I	GCAGC	5 cut(s)	336, 505, 857, 868, 869
BstV2I	GAAGAC	1 cut(s)	57
BsuRI	GGCC	3 cut(s)	32, 248, 794
BtgI	CCRYGG	1 cut(s)	199
BtgZI	GCGATG	1 cut(s)	231
BtsCI	GGATG	3 cut(s)	674, 735, 817
Cac8I	GCNNGC	4 cut(s)	214, 237, 630, 862
Cfr10I	RCCGGY	2 cut(s)	628, 790
Cfr13I	GGNCC	2 cut(s)	695, 793
CseI	GACGC	2 cut(s)	228, 878
Csp6I	GTAC	2 cut(s)	8, 825
CviAII	CATG	2 cut(s)	28, 569
CviQI	GTAC	2 cut(s)	8, 825
DdeI	CTNAG	5 cut(s)	42, 58, 231, 371, 573
DpnI	GATC	5 cut(s)	26, 266, 321, 497, 660
DpnII	GATC	5 cut(s)	24, 264, 319, 495, 658
DraI	TTTAAA	1 cut(s)	747
DrdI	GACNNNNNNGTC	2 cut(s)	59, 149
DriI	GACNNNNNGTC	1 cut(s)	160
DseDI	GACNNNNNNGTC	2 cut(s)	59, 149
Eam1104I	CTCTTC	2 cut(s)	482, 638
Eam1105I	GACNNNNNGTC	1 cut(s)	160
EarI	CTCTTC	2 cut(s)	482, 638
EciI	GGCGGA	2 cut(s)	166, 196
Eco130I	CCWWGG	3 cut(s)	691, 807, 840
Eco147I	AGGCCT	1 cut(s)	248
Eco47I	GGWCC	1 cut(s)	695
Eco88I	CYCGRG	2 cut(s)	353, 404
Eco91I	GGTNACC	1 cut(s)	101
EcoO65I	GGTNACC	1 cut(s)	101
EcoRI	GAATTC	1 cut(s)	464
EcoRII	CCWGG	2 cut(s)	105, 546
EcoT14I	CCWWGG	3 cut(s)	691, 807, 840
ErhI	CCWWGG	3 cut(s)	691, 807, 840
FaeI	CATG	2 cut(s)	31, 572
FaiI	YATR	3 cut(s)	29, 570, 635
FaqI	GGGAC	1 cut(s)	47
FatI	CATG	2 cut(s)	27, 568
FauI	CCCGC	3 cut(s)	72, 414, 811
FblI	GTMKAC	2 cut(s)	153, 579
Fnu4HI	GCNGC	7 cut(s)	210, 332, 350, 519, 846, 858, 882
FokI	GGATG	3 cut(s)	661, 742, 824
Fsp4HI	GCNGC	7 cut(s)	210, 332, 350, 519, 846, 858, 882
FspBI	CTAG	1 cut(s)	861
GluI	GCNGC	7 cut(s)	210, 332, 350, 519, 846, 858, 882
GsaI	CCCAGC	2 cut(s)	136, 800
HaeIII	GGCC	3 cut(s)	32, 248, 794
HapII	CCGG	3 cut(s)	629, 705, 791
HgaI	GACGC	2 cut(s)	228, 878
Hin1II	CATG	2 cut(s)	31, 572
HincII	GTYRAC	2 cut(s)	78, 154
HindII	GTYRAC	2 cut(s)	78, 154
HinfI	GANTC	9 cut(s)	20, 56, 123, 143, 161, 173, 185, 275, 477
HpaII	CCGG	3 cut(s)	629, 705, 791
HphI	GGTGA	1 cut(s)	777
Hpy166II	GTNNAC	4 cut(s)	39, 78, 154, 580
Hpy188I	TCNGA	6 cut(s)	244, 316, 324, 374, 444, 505
Hpy188III	TCNNGA	2 cut(s)	557, 662
Hpy8I	GTNNAC	4 cut(s)	39, 78, 154, 580
Hpy99I	CGWCG	8 cut(s)	95, 98, 101, 155, 244, 265, 320, 872
HpyAV	CCTTC	6 cut(s)	157, 259, 406, 589, 649, 792
HpyCH4III	ACNGT	2 cut(s)	73, 101
HpyCH4V	TGCA	2 cut(s)	395, 815
HpyF10VI	GCNNNNNNNGC	7 cut(s)	218, 245, 709, 718, 812, 854, 878
HpyF3I	CTNAG	5 cut(s)	42, 58, 231, 371, 573
Hsp92II	CATG	2 cut(s)	31, 572
KroI	GCCGGC	1 cut(s)	628
KroNI	GCCGGC	1 cut(s)	630
Kzo9I	GATC	5 cut(s)	24, 264, 319, 495, 658
LmnI	GCTCC	3 cut(s)	209, 805, 838
Lsp1109I	GCAGC	5 cut(s)	336, 505, 857, 868, 869
LweI	GCATC	3 cut(s)	208, 336, 802
MaeI	CTAG	1 cut(s)	861
MaeIII	GTNAC	2 cut(s)	101, 110
MalI	GATC	5 cut(s)	26, 266, 321, 497, 660
MboI	GATC	5 cut(s)	24, 264, 319, 495, 658
MboII	GAAGA	6 cut(s)	62, 187, 499, 505, 655, 664
MfeI	CAATTG	2 cut(s)	600, 849
MluCI	AATT	4 cut(s)	396, 464, 600, 849
MlyI	GAGTC	6 cut(s)	14, 50, 117, 137, 167, 170
MmeI	TCCRAC	3 cut(s)	222, 321, 339
MroNI	GCCGGC	1 cut(s)	628
MroXI	GAANNNNTTC	1 cut(s)	542
MseI	TTAA	2 cut(s)	746, 777
MspCI	CTTAAG	1 cut(s)	776
MspI	CCGG	3 cut(s)	629, 705, 791
MspR9I	CCNGG	3 cut(s)	107, 548, 705
MunI	CAATTG	2 cut(s)	600, 849
Mva1269I	GAATGC	1 cut(s)	397
MvaI	CCWGG	2 cut(s)	107, 548
MwoI	GCNNNNNNNGC	7 cut(s)	218, 245, 709, 718, 812, 854, 878
NaeI	GCCGGC	1 cut(s)	630
NciI	CCSGG	1 cut(s)	705
NdeII	GATC	5 cut(s)	24, 264, 319, 495, 658
NgoMIV	GCCGGC	1 cut(s)	628
NheI	GCTAGC	1 cut(s)	860
NlaIII	CATG	2 cut(s)	31, 572
NlaIV	GGNNCC	3 cut(s)	205, 627, 795
PaeR7I	CTCGAG	1 cut(s)	404
PceI	AGGCCT	1 cut(s)	248
PcsI	WCGNNNNNNNCGW	2 cut(s)	147, 156
PctI	GAATGC	1 cut(s)	397
PdiI	GCCGGC	1 cut(s)	630
PdmI	GAANNNNTTC	1 cut(s)	542
PfeI	GAWTC	3 cut(s)	185, 275, 477
PflFI	GACNNNGTC	1 cut(s)	59
PkrI	GCNGC	7 cut(s)	211, 333, 351, 520, 847, 859, 883
PleI	GAGTC	6 cut(s)	14, 50, 117, 137, 167, 169
PpsI	GAGTC	6 cut(s)	14, 50, 117, 137, 167, 169
Psp6I	CCWGG	2 cut(s)	105, 546
PspEI	GGTNACC	1 cut(s)	101
PspFI	CCCAGC	2 cut(s)	132, 796
PspGI	CCWGG	2 cut(s)	105, 546
PspN4I	GGNNCC	3 cut(s)	205, 627, 795
PspPI	GGNCC	2 cut(s)	695, 793
PspXI	VCTCGAGB	1 cut(s)	404
PsyI	GACNNNGTC	1 cut(s)	59
RsaI	GTAC	2 cut(s)	9, 826
RsaNI	GTAC	2 cut(s)	8, 825
SalI	GTCGAC	1 cut(s)	152
SaqAI	TTAA	2 cut(s)	746, 777
SatI	GCNGC	7 cut(s)	210, 332, 350, 519, 846, 858, 882
Sau3AI	GATC	5 cut(s)	24, 264, 319, 495, 658
Sau96I	GGNCC	2 cut(s)	695, 793
ScaI	AGTACT	1 cut(s)	826
SchI	GAGTC	6 cut(s)	14, 50, 117, 137, 167, 170
ScrFI	CCNGG	3 cut(s)	107, 548, 705
SfaNI	GCATC	3 cut(s)	208, 336, 802
SfcI	CTRYAG	2 cut(s)	633, 873
Sfr274I	CTCGAG	1 cut(s)	404
SinI	GGWCC	1 cut(s)	695
SlaI	CTCGAG	1 cut(s)	404
SmlI	CTYRAG	3 cut(s)	167, 404, 776
SmoI	CTYRAG	3 cut(s)	167, 404, 776
Sse9I	AATT	4 cut(s)	396, 464, 600, 849
SseBI	AGGCCT	1 cut(s)	248
SsiI	CCGC	7 cut(s)	65, 177, 207, 210, 332, 421, 804
SspMI	CTAG	1 cut(s)	861
StuI	AGGCCT	1 cut(s)	248
StyD4I	CCNGG	3 cut(s)	105, 546, 703
StyI	CCWWGG	3 cut(s)	691, 807, 840
TaaI	ACNGT	2 cut(s)	73, 101
TaqI	TCGA	8 cut(s)	23, 90, 141, 153, 263, 278, 405, 450
TasI	AATT	4 cut(s)	396, 464, 600, 849
TatI	WGTACW	2 cut(s)	7, 824
TauI	GCSGC	2 cut(s)	212, 334
TfiI	GAWTC	3 cut(s)	185, 275, 477
Tru1I	TTAA	2 cut(s)	746, 777
Tru9I	TTAA	2 cut(s)	746, 777
TseI	GCWGC	5 cut(s)	349, 518, 845, 857, 881
TspDTI	ATGAA	2 cut(s)	477, 557
TspGWI	ACGGA	2 cut(s)	249, 327
Tth111I	GACNNNGTC	1 cut(s)	59
Vha464I	CTTAAG	1 cut(s)	776
VpaK11BI	GGWCC	1 cut(s)	695
XapI	RAATTY	1 cut(s)	464
XhoI	CTCGAG	1 cut(s)	404
XmiI	GTMKAC	2 cut(s)	153, 579
XmnI	GAANNNNTTC	1 cut(s)	542
XspI	CTAG	1 cut(s)	861
ZrmI	AGTACT	1 cut(s)	826

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.