Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0002423

Physical Location & Seq

Genomic Coordinates Forward (+)

16180211 .. 16189758

Gene Structure 9548 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG087000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 399 bp

ATGCAGCTGATGGATATAGCAGACAATAAGCTTAGTGGAGATATACCATCACAGGGAGTGAGAGCAGATGAGAATTCTGAGTTAAGTAATGAAATTGGCAAGCAACTTAGTGTAAAGAGTGCTGCTGCTGGTCTAAGTCAAGAGAAGTTTCATGCTGAGGTAGACAAGAACTACTGGAAGGCAGTTGCAGATCTCATTCCCAATGAGGTGCCAGCTATAGAGAAGAAGAGAGGGAAGAAGGATCAAGAAAAGAAGCCTTCCATTGTCGTTGTGCAAGGTCCAAAACCTGGTAAGCCAACTGAGCTCTCGAGGATGAGGCAGATACTTCTAAAATTGAAGCATAATACGCCTCCTCACCTAAAACCTTTGCTACCGGCCGGCACCAGCCGCTGCCCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0006897 GO:0006898 GO:0008150 GO:0009504 GO:0009507 GO:0009524 GO:0009526 GO:0009536 GO:0009941 GO:0012506 GO:0016020 GO:0016192 GO:0030117 GO:0030118 GO:0030120 GO:0030125 GO:0030135 GO:0030136 GO:0030276 GO:0030659 GO:0030662 GO:0030665 GO:0031090 GO:0031410 GO:0031967 GO:0031975 GO:0031982 GO:0032050 GO:0032991 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048475 GO:0051179 GO:0051234 GO:0071944 GO:0072583 GO:0097708 GO:0098588 GO:0098657 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04142 ko04144 ko04721 ko04961 ko05016 ko05100 map04142 map04144 map04721 map04961 map05016 map05100

Pfam Domains

Protein Families

Clathrin_lg_ch

Protein Analysis

132

Amino Acids

14.49

Weight (kDa)

9.49

Isoelectric Point (pI)

32.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Publication-ready

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Orthologous Genes (Group: OG0002423)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40060
fragaria_vesca	FvH4_4g08020 FvH4_7g24260
malus_domestica	MD00G1024200.v1.1 MD00G1047100.v1.1 MD00G1047900.v1.1 MD00G1048400.v1.1 MD00G1062700.v1.1 MD01G1132200.v1.1 MD01G1150700.v1.1 MD01G1152000.v1.1 MD05G1333900.v1.1 MD07G1216800.v1.1 MD07G1219900.v1.1
prunus_persica	Prupe.2G248500_v2.0.a1
pyrus_communis	pycom01g16830 pycom01g16850 pycom01g16880 pycom07g19900 pycom11g19450
rosa_chinensis	RchiOBHm_Chr1g0369851
rosa_laevigata	RLG00000027088 RLG00000027098
rosa_multiflora	Rmu_co8474619.1_g000001 Rmu_sc0008140.1_g000010
rosa_roxburghii	Rroxscaffold_3G00232620 Rroxscaffold_4G00286940 Rroxscaffold_4G00287110 Rroxscaffold_4G00322920
rosa_rugosa	Rorug01G0352700
rosa_samantha	Rh1AG194100 Rh1AG361200 Rh1BG178100 Rh1BG324900 Rh1CG179000 Rh1CG338100 Rh1DG087000 Rh1DG207800 Rh1DG355300
rosa_wichuraiana	Rw0G015470 Rw1G031810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	208, 380
AccB7I	CCANNNNNTGG	1 cut(s)	287
AccI	GTMKAC	1 cut(s)	162
AciI	CCGC	1 cut(s)	388
AclWI	GGATC	1 cut(s)	249
AcoI	YGGCCR	1 cut(s)	375
AcsI	RAATTY	1 cut(s)	73
AfiI	CCNNNNNNNGG	2 cut(s)	53, 287
AgsI	TTSAA	1 cut(s)	337
AjnI	CCWGG	1 cut(s)	286
AluBI	AGCT	4 cut(s)	7, 31, 215, 304
AluI	AGCT	4 cut(s)	7, 31, 215, 304
Alw21I	GWGCWC	1 cut(s)	306
AlwI	GGATC	1 cut(s)	249
AlwNI	CAGNNNCTG	1 cut(s)	390
Ama87I	CYCGRG	1 cut(s)	307
AoxI	GGCC	1 cut(s)	375
ApeKI	GCWGC	4 cut(s)	4, 122, 125, 390
ApoI	RAATTY	1 cut(s)	73
AspS9I	GGNCC	1 cut(s)	278
AsuHPI	GGTGA	1 cut(s)	347
AvaI	CYCGRG	1 cut(s)	307
AvaII	GGWCC	1 cut(s)	278
BanI	GGYRCC	2 cut(s)	208, 380
BanII	GRGCYC	1 cut(s)	306
Bbv12I	GWGCWC	1 cut(s)	306
BbvCI	CCTCAGC	1 cut(s)	156
BbvI	GCAGC	4 cut(s)	16, 109, 112, 377
BccI	CCATC	2 cut(s)	4, 55
BciT130I	CCWGG	1 cut(s)	288
BfmI	CTRYAG	1 cut(s)	216
BglII	AGATCT	1 cut(s)	190
BisI	GCNGC	5 cut(s)	5, 123, 126, 388, 391
BlsI	GCNGC	5 cut(s)	6, 124, 127, 389, 392
Bme1390I	CCNGG	1 cut(s)	288
Bme18I	GGWCC	1 cut(s)	278
BmeT110I	CYCGRG	1 cut(s)	307
BmgT120I	GGNCC	1 cut(s)	278
BmiI	GGNNCC	2 cut(s)	210, 382
BmrFI	CCNGG	1 cut(s)	288
Bpu10I	CCTNAGC	1 cut(s)	156
Bsc4I	CCNNNNNNNGG	2 cut(s)	53, 287
Bse118I	RCCGGY	2 cut(s)	373, 377
Bse1I	ACTGG	1 cut(s)	179
BseBI	CCWGG	1 cut(s)	288
BseGI	GGATG	1 cut(s)	318
BseLI	CCNNNNNNNGG	2 cut(s)	53, 287
BseMII	CTCAG	3 cut(s)	69, 147, 291
BseNI	ACTGG	1 cut(s)	179
BseRI	GAGGAG	1 cut(s)	342
BseX3I	CGGCCG	1 cut(s)	375
BseXI	GCAGC	4 cut(s)	16, 109, 112, 377
Bsh1285I	CGRYCG	1 cut(s)	378
BshFI	GGCC	1 cut(s)	377
BshNI	GGYRCC	2 cut(s)	208, 380
BsiEI	CGRYCG	1 cut(s)	378
BsiHKAI	GWGCWC	1 cut(s)	306
BsiHKCI	CYCGRG	1 cut(s)	307
BsiSI	CCGG	2 cut(s)	374, 378
BslI	CCNNNNNNNGG	2 cut(s)	53, 287
BsnI	GGCC	1 cut(s)	377
BsoBI	CYCGRG	1 cut(s)	307
Bsp1286I	GDGCHC	1 cut(s)	306
Bsp143I	GATC	2 cut(s)	190, 241
BspACI	CCGC	1 cut(s)	388
BspANI	GGCC	1 cut(s)	377
BspCNI	CTCAG	3 cut(s)	70, 148, 292
BspLI	GGNNCC	2 cut(s)	210, 382
BspPI	GGATC	1 cut(s)	249
BspT107I	GGYRCC	2 cut(s)	208, 380
BsrFI	RCCGGY	2 cut(s)	373, 377
BsrI	ACTGG	1 cut(s)	179
BssAI	RCCGGY	2 cut(s)	373, 377
BssMI	GATC	2 cut(s)	190, 241
Bst2UI	CCWGG	1 cut(s)	288
Bst6I	CTCTTC	1 cut(s)	221
BstC8I	GCNNGC	3 cut(s)	101, 213, 379
BstDEI	CTNAG	6 cut(s)	32, 78, 107, 134, 156, 300
BstF5I	GGATG	1 cut(s)	318
BstKTI	GATC	2 cut(s)	193, 244
BstMBI	GATC	2 cut(s)	190, 241
BstMCI	CGRYCG	1 cut(s)	378
BstMWI	GCNNNNNNNGC	3 cut(s)	301, 346, 387
BstNI	CCWGG	1 cut(s)	288
BstSCI	CCNGG	1 cut(s)	286
BstSFI	CTRYAG	1 cut(s)	216
BstV1I	GCAGC	4 cut(s)	16, 109, 112, 377
BstX2I	RGATCY	1 cut(s)	190
BstYI	RGATCY	1 cut(s)	190
BstZI	CGGCCG	1 cut(s)	375
BsuRI	GGCC	1 cut(s)	377
BtsCI	GGATG	1 cut(s)	318
Cac8I	GCNNGC	3 cut(s)	101, 213, 379
CaiI	CAGNNNCTG	1 cut(s)	390
Cfr10I	RCCGGY	2 cut(s)	373, 377
Cfr13I	GGNCC	1 cut(s)	278
CsiI	ACCWGGT	1 cut(s)	286
CviAII	CATG	1 cut(s)	152
CviJI	RGCY	8 cut(s)	7, 31, 215, 256, 295, 304, 377, 387
CviKI_1	RGCY	8 cut(s)	7, 31, 215, 256, 295, 304, 377, 387
DdeI	CTNAG	6 cut(s)	32, 78, 107, 134, 156, 300
DpnI	GATC	2 cut(s)	192, 243
DpnII	GATC	2 cut(s)	190, 241
EaeI	YGGCCR	1 cut(s)	375
EagI	CGGCCG	1 cut(s)	375
Eam1104I	CTCTTC	1 cut(s)	221
EarI	CTCTTC	1 cut(s)	221
Ecl136II	GAGCTC	1 cut(s)	304
EclXI	CGGCCG	1 cut(s)	375
Eco24I	GRGCYC	1 cut(s)	306
Eco47I	GGWCC	1 cut(s)	278
Eco52I	CGGCCG	1 cut(s)	375
Eco53kI	GAGCTC	1 cut(s)	304
Eco88I	CYCGRG	1 cut(s)	307
EcoICRI	GAGCTC	1 cut(s)	304
EcoRI	GAATTC	1 cut(s)	73
EcoRII	CCWGG	1 cut(s)	286
EcoT38I	GRGCYC	1 cut(s)	306
FaeI	CATG	1 cut(s)	155
FaiI	YATR	5 cut(s)	17, 44, 153, 218, 342
FatI	CATG	1 cut(s)	151
FblI	GTMKAC	1 cut(s)	162
Fnu4HI	GCNGC	5 cut(s)	5, 123, 126, 388, 391
FokI	GGATG	1 cut(s)	325
FriOI	GRGCYC	1 cut(s)	306
Fsp4HI	GCNGC	5 cut(s)	5, 123, 126, 388, 391
GluI	GCNGC	5 cut(s)	5, 123, 126, 388, 391
HaeIII	GGCC	1 cut(s)	377
HapII	CCGG	2 cut(s)	374, 378
Hin1II	CATG	1 cut(s)	155
HindIII	AAGCTT	1 cut(s)	29
HpaII	CCGG	2 cut(s)	374, 378
HphI	GGTGA	1 cut(s)	347
Hpy166II	GTNNAC	1 cut(s)	163
Hpy188I	TCNGA	1 cut(s)	79
Hpy188III	TCNNGA	3 cut(s)	140, 245, 307
Hpy8I	GTNNAC	1 cut(s)	163
HpyAV	CCTTC	3 cut(s)	172, 232, 267
HpyCH4V	TGCA	3 cut(s)	4, 188, 274
HpyF10VI	GCNNNNNNNGC	3 cut(s)	301, 346, 387
HpyF3I	CTNAG	6 cut(s)	32, 78, 107, 134, 156, 300
Hsp92II	CATG	1 cut(s)	155
KroI	GCCGGC	1 cut(s)	377
KroNI	GCCGGC	1 cut(s)	379
Kzo9I	GATC	2 cut(s)	190, 241
LpnPI	CCDG	8 cut(s)	38, 114, 160, 225, 273, 300, 387, 391
Lsp1109I	GCAGC	4 cut(s)	16, 109, 112, 377
MabI	ACCWGGT	1 cut(s)	286
MalI	GATC	2 cut(s)	192, 243
MboI	GATC	2 cut(s)	190, 241
MboII	GAAGA	3 cut(s)	235, 238, 247
MflI	RGATCY	1 cut(s)	190
MhlI	GDGCHC	1 cut(s)	306
MluCI	AATT	3 cut(s)	73, 93, 332
MnlI	CCTC	7 cut(s)	151, 199, 224, 303, 309, 360, 363
MroNI	GCCGGC	1 cut(s)	377
MseI	TTAA	1 cut(s)	83
MspA1I	CMGCKG	2 cut(s)	7, 390
MspI	CCGG	2 cut(s)	374, 378
MspR9I	CCNGG	1 cut(s)	288
MvaI	CCWGG	1 cut(s)	288
MwoI	GCNNNNNNNGC	3 cut(s)	301, 346, 387
NaeI	GCCGGC	1 cut(s)	379
NdeII	GATC	2 cut(s)	190, 241
NgoMIV	GCCGGC	1 cut(s)	377
NlaIII	CATG	1 cut(s)	155
NlaIV	GGNNCC	2 cut(s)	210, 382
PaeR7I	CTCGAG	1 cut(s)	307
PdiI	GCCGGC	1 cut(s)	379
PflMI	CCANNNNNTGG	1 cut(s)	287
PkrI	GCNGC	5 cut(s)	6, 124, 127, 389, 392
Psp124BI	GAGCTC	1 cut(s)	306
Psp6I	CCWGG	1 cut(s)	286
PspGI	CCWGG	1 cut(s)	286
PspN4I	GGNNCC	2 cut(s)	210, 382
PspPI	GGNCC	1 cut(s)	278
PstNI	CAGNNNCTG	1 cut(s)	390
PsuI	RGATCY	1 cut(s)	190
PvuII	CAGCTG	1 cut(s)	7
SacI	GAGCTC	1 cut(s)	306
SaqAI	TTAA	1 cut(s)	83
SatI	GCNGC	5 cut(s)	5, 123, 126, 388, 391
Sau3AI	GATC	2 cut(s)	190, 241
Sau96I	GGNCC	1 cut(s)	278
ScrFI	CCNGG	1 cut(s)	288
SduI	GDGCHC	1 cut(s)	306
SexAI	ACCWGGT	1 cut(s)	286
SfcI	CTRYAG	1 cut(s)	216
Sfr274I	CTCGAG	1 cut(s)	307
SinI	GGWCC	1 cut(s)	278
SlaI	CTCGAG	1 cut(s)	307
SmlI	CTYRAG	1 cut(s)	307
SmoI	CTYRAG	1 cut(s)	307
Sse9I	AATT	3 cut(s)	73, 93, 332
SsiI	CCGC	1 cut(s)	388
SstI	GAGCTC	1 cut(s)	306
StyD4I	CCNGG	1 cut(s)	286
TaqI	TCGA	1 cut(s)	308
TasI	AATT	3 cut(s)	73, 93, 332
TauI	GCSGC	1 cut(s)	390
Tru1I	TTAA	1 cut(s)	83
Tru9I	TTAA	1 cut(s)	83
TseI	GCWGC	4 cut(s)	4, 122, 125, 390
TspDTI	ATGAA	2 cut(s)	105, 140
Van91I	CCANNNNNTGG	1 cut(s)	287
VpaK11BI	GGWCC	1 cut(s)	278
XapI	RAATTY	1 cut(s)	73
XhoI	CTCGAG	1 cut(s)	307
XmiI	GTMKAC	1 cut(s)	162

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.