Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr1D

Orthogroup ID

OG0002423

Physical Location & Seq

Genomic Coordinates Reverse (-)

40589019 .. 40604942

Gene Structure 15924 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh1DG207800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

ATGGTTTCATGGGCTCATGGCTCAAGGAAAGCGACTAACATTCACCCCGTTTTCATGAGCATGGCAATAGAGGTTTGTGTAGCTGGAAAGAAAAACGAATATCAAATCAAATGTTTGTTGCCAGTTGAGAAGTTTCATGCTGAGGTAGACAAGAACTACTGGAAGGCTGTTGCAGATCTCATTCCCAATGAGGTGCCAGCTATAGAGAAGAAGAGAGGGAAGAAGGATCAAGAAAAGAAGCCTTCCATTGTTGTTATGCAAGGTCCAAAACCTGGTAAGCTAACTGAACTCTCGAGGATGAGGCAGCTACTTCTAAAATTGAAGCATAATATGCCTCCTCACCTAAAGCCTTCGCCACCAGCACCAGCCGCTGCCCCTGAGGCTGTAGTTGCCGTTGTGGCAGCTGCGCCTGAGGCTATAGCTGCTGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0006897 GO:0006898 GO:0008150 GO:0009504 GO:0009507 GO:0009524 GO:0009526 GO:0009536 GO:0009941 GO:0012506 GO:0016020 GO:0016192 GO:0030117 GO:0030118 GO:0030120 GO:0030125 GO:0030135 GO:0030136 GO:0030276 GO:0030659 GO:0030662 GO:0030665 GO:0031090 GO:0031410 GO:0031967 GO:0031975 GO:0031982 GO:0032050 GO:0032991 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048475 GO:0051179 GO:0051234 GO:0071944 GO:0072583 GO:0097708 GO:0098588 GO:0098657 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04142 ko04144 ko04721 ko04961 ko05016 ko05100 map04142 map04144 map04721 map04961 map05016 map05100

Pfam Domains

Protein Families

Clathrin_lg_ch

Protein Analysis

143

Amino Acids

15.61

Weight (kDa)

9.67

Isoelectric Point (pI)

46.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002423)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40060
fragaria_vesca	FvH4_4g08020 FvH4_7g24260
malus_domestica	MD00G1024200.v1.1 MD00G1047100.v1.1 MD00G1047900.v1.1 MD00G1048400.v1.1 MD00G1062700.v1.1 MD01G1132200.v1.1 MD01G1150700.v1.1 MD01G1152000.v1.1 MD05G1333900.v1.1 MD07G1216800.v1.1 MD07G1219900.v1.1
prunus_persica	Prupe.2G248500_v2.0.a1
pyrus_communis	pycom01g16830 pycom01g16850 pycom01g16880 pycom07g19900 pycom11g19450
rosa_chinensis	RchiOBHm_Chr1g0369851
rosa_laevigata	RLG00000027088 RLG00000027098
rosa_multiflora	Rmu_co8474619.1_g000001 Rmu_sc0008140.1_g000010
rosa_roxburghii	Rroxscaffold_3G00232620 Rroxscaffold_4G00286940 Rroxscaffold_4G00287110 Rroxscaffold_4G00322920
rosa_rugosa	Rorug01G0352700
rosa_samantha	Rh1AG194100 Rh1AG361200 Rh1BG178100 Rh1BG324900 Rh1CG179000 Rh1CG338100 Rh1DG087000 Rh1DG207800 Rh1DG355300
rosa_wichuraiana	Rw0G015470 Rw1G031810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	193
AccB7I	CCANNNNNTGG	1 cut(s)	272
AccI	GTMKAC	1 cut(s)	147
AciI	CCGC	1 cut(s)	369
AclWI	GGATC	1 cut(s)	234
AfiI	CCNNNNNNNGG	1 cut(s)	272
AgsI	TTSAA	1 cut(s)	322
AjnI	CCWGG	1 cut(s)	271
AluBI	AGCT	6 cut(s)	83, 200, 280, 307, 404, 422
AluI	AGCT	6 cut(s)	83, 200, 280, 307, 404, 422
AlwI	GGATC	1 cut(s)	234
AlwNI	CAGNNNCTG	1 cut(s)	371
Ama87I	CYCGRG	1 cut(s)	292
ApeKI	GCWGC	6 cut(s)	304, 371, 401, 404, 422, 425
AspLEI	GCGC	1 cut(s)	409
AspS9I	GGNCC	1 cut(s)	263
AsuHPI	GGTGA	2 cut(s)	35, 332
AvaI	CYCGRG	1 cut(s)	292
AvaII	GGWCC	1 cut(s)	263
AxyI	CCTNAGG	2 cut(s)	378, 411
BanI	GGYRCC	1 cut(s)	193
BanII	GRGCYC	1 cut(s)	16
BbvCI	CCTCAGC	1 cut(s)	141
BbvI	GCAGC	6 cut(s)	316, 358, 391, 409, 412, 413
BceAI	ACGGC	1 cut(s)	377
BciT130I	CCWGG	1 cut(s)	273
BfmI	CTRYAG	3 cut(s)	201, 384, 417
BglI	GCCNNNNNGGC	2 cut(s)	380, 398
BglII	AGATCT	1 cut(s)	175
BisI	GCNGC	7 cut(s)	305, 369, 372, 402, 405, 423, 426
BlsI	GCNGC	7 cut(s)	306, 370, 373, 403, 406, 424, 427
Bme1390I	CCNGG	1 cut(s)	273
Bme18I	GGWCC	1 cut(s)	263
BmeT110I	CYCGRG	1 cut(s)	292
BmgT120I	GGNCC	1 cut(s)	263
BmiI	GGNNCC	1 cut(s)	195
BmrFI	CCNGG	1 cut(s)	273
Bpu10I	CCTNAGC	1 cut(s)	141
BpuEI	CTTGAG	1 cut(s)	7
Bsc4I	CCNNNNNNNGG	1 cut(s)	272
Bse1I	ACTGG	2 cut(s)	122, 164
Bse21I	CCTNAGG	2 cut(s)	378, 411
BseBI	CCWGG	1 cut(s)	273
BseGI	GGATG	1 cut(s)	303
BseLI	CCNNNNNNNGG	1 cut(s)	272
BseMII	CTCAG	3 cut(s)	132, 369, 402
BseNI	ACTGG	2 cut(s)	122, 164
BseRI	GAGGAG	1 cut(s)	327
BseXI	GCAGC	6 cut(s)	316, 358, 391, 409, 412, 413
BshNI	GGYRCC	1 cut(s)	193
BsiHKCI	CYCGRG	1 cut(s)	292
BslI	CCNNNNNNNGG	1 cut(s)	272
BsoBI	CYCGRG	1 cut(s)	292
Bsp1286I	GDGCHC	1 cut(s)	16
Bsp143I	GATC	2 cut(s)	175, 226
BspACI	CCGC	1 cut(s)	369
BspCNI	CTCAG	3 cut(s)	133, 370, 403
BspHI	TCATGA	1 cut(s)	54
BspLI	GGNNCC	1 cut(s)	195
BspPI	GGATC	1 cut(s)	234
BspT107I	GGYRCC	1 cut(s)	193
BsrI	ACTGG	2 cut(s)	122, 164
BssMI	GATC	2 cut(s)	175, 226
Bst2UI	CCWGG	1 cut(s)	273
Bst6I	CTCTTC	1 cut(s)	206
BstAPI	GCANNNNNTGC	1 cut(s)	331
BstC8I	GCNNGC	1 cut(s)	198
BstDEI	CTNAG	3 cut(s)	141, 378, 411
BstF5I	GGATG	1 cut(s)	303
BstHHI	GCGC	1 cut(s)	409
BstKTI	GATC	2 cut(s)	178, 229
BstMBI	GATC	2 cut(s)	175, 226
BstMWI	GCNNNNNNNGC	7 cut(s)	331, 368, 380, 389, 398, 413, 422
BstNI	CCWGG	1 cut(s)	273
BstSCI	CCNGG	1 cut(s)	271
BstSFI	CTRYAG	3 cut(s)	201, 384, 417
BstV1I	GCAGC	6 cut(s)	316, 358, 391, 409, 412, 413
BstX2I	RGATCY	1 cut(s)	175
BstYI	RGATCY	1 cut(s)	175
Bsu36I	CCTNAGG	2 cut(s)	378, 411
BtsCI	GGATG	1 cut(s)	303
Cac8I	GCNNGC	1 cut(s)	198
CaiI	CAGNNNCTG	1 cut(s)	371
CciI	TCATGA	1 cut(s)	54
CfoI	GCGC	1 cut(s)	409
Cfr13I	GGNCC	1 cut(s)	263
CsiI	ACCWGGT	1 cut(s)	271
CviAII	CATG	5 cut(s)	9, 17, 55, 61, 137
DdeI	CTNAG	3 cut(s)	141, 378, 411
DpnI	GATC	2 cut(s)	177, 228
DpnII	GATC	2 cut(s)	175, 226
Eam1104I	CTCTTC	1 cut(s)	206
EarI	CTCTTC	1 cut(s)	206
Eco24I	GRGCYC	1 cut(s)	16
Eco47I	GGWCC	1 cut(s)	263
Eco81I	CCTNAGG	2 cut(s)	378, 411
Eco88I	CYCGRG	1 cut(s)	292
EcoRII	CCWGG	1 cut(s)	271
EcoT38I	GRGCYC	1 cut(s)	16
FaeI	CATG	5 cut(s)	12, 20, 58, 64, 140
FatI	CATG	5 cut(s)	8, 16, 54, 60, 136
FblI	GTMKAC	1 cut(s)	147
Fnu4HI	GCNGC	7 cut(s)	305, 369, 372, 402, 405, 423, 426
FokI	GGATG	1 cut(s)	310
FriOI	GRGCYC	1 cut(s)	16
Fsp4HI	GCNGC	7 cut(s)	305, 369, 372, 402, 405, 423, 426
GlaI	GCGC	1 cut(s)	408
GluI	GCNGC	7 cut(s)	305, 369, 372, 402, 405, 423, 426
HhaI	GCGC	1 cut(s)	409
Hin1II	CATG	5 cut(s)	12, 20, 58, 64, 140
Hin6I	GCGC	1 cut(s)	407
HinP1I	GCGC	1 cut(s)	407
HphI	GGTGA	2 cut(s)	35, 332
Hpy166II	GTNNAC	1 cut(s)	148
Hpy188III	TCNNGA	3 cut(s)	55, 230, 292
Hpy8I	GTNNAC	1 cut(s)	148
HpyAV	CCTTC	4 cut(s)	157, 217, 252, 360
HpyCH4V	TGCA	2 cut(s)	173, 259
HpyF10VI	GCNNNNNNNGC	7 cut(s)	331, 368, 380, 389, 398, 413, 422
HpyF3I	CTNAG	3 cut(s)	141, 378, 411
Hsp92II	CATG	5 cut(s)	12, 20, 58, 64, 140
HspAI	GCGC	1 cut(s)	407
Kzo9I	GATC	2 cut(s)	175, 226
Lsp1109I	GCAGC	6 cut(s)	316, 358, 391, 409, 412, 413
MabI	ACCWGGT	1 cut(s)	271
MalI	GATC	2 cut(s)	177, 228
MboI	GATC	2 cut(s)	175, 226
MboII	GAAGA	3 cut(s)	220, 223, 232
MflI	RGATCY	1 cut(s)	175
MhlI	GDGCHC	1 cut(s)	16
MluCI	AATT	1 cut(s)	317
MslI	CAYNNNNRTG	1 cut(s)	59
MspA1I	CMGCKG	2 cut(s)	371, 404
MspR9I	CCNGG	1 cut(s)	273
MvaI	CCWGG	1 cut(s)	273
MwoI	GCNNNNNNNGC	7 cut(s)	331, 368, 380, 389, 398, 413, 422
NdeII	GATC	2 cut(s)	175, 226
NlaIII	CATG	5 cut(s)	12, 20, 58, 64, 140
NlaIV	GGNNCC	1 cut(s)	195
PaeR7I	CTCGAG	1 cut(s)	292
PagI	TCATGA	1 cut(s)	54
PflMI	CCANNNNNTGG	1 cut(s)	272
PkrI	GCNGC	7 cut(s)	306, 370, 373, 403, 406, 424, 427
Psp6I	CCWGG	1 cut(s)	271
PspGI	CCWGG	1 cut(s)	271
PspN4I	GGNNCC	1 cut(s)	195
PspPI	GGNCC	1 cut(s)	263
PstNI	CAGNNNCTG	1 cut(s)	371
PsuI	RGATCY	1 cut(s)	175
PvuII	CAGCTG	1 cut(s)	404
RseI	CAYNNNNRTG	1 cut(s)	59
SatI	GCNGC	7 cut(s)	305, 369, 372, 402, 405, 423, 426
Sau3AI	GATC	2 cut(s)	175, 226
Sau96I	GGNCC	1 cut(s)	263
ScrFI	CCNGG	1 cut(s)	273
SduI	GDGCHC	1 cut(s)	16
SexAI	ACCWGGT	1 cut(s)	271
SfcI	CTRYAG	3 cut(s)	201, 384, 417
Sfr274I	CTCGAG	1 cut(s)	292
SinI	GGWCC	1 cut(s)	263
SlaI	CTCGAG	1 cut(s)	292
SmiMI	CAYNNNNRTG	1 cut(s)	59
SmlI	CTYRAG	2 cut(s)	22, 292
SmoI	CTYRAG	2 cut(s)	22, 292
Sse9I	AATT	1 cut(s)	317
SsiI	CCGC	1 cut(s)	369
StyD4I	CCNGG	1 cut(s)	271
TaqI	TCGA	1 cut(s)	293
TasI	AATT	1 cut(s)	317
TauI	GCSGC	1 cut(s)	371
TseI	GCWGC	6 cut(s)	304, 371, 401, 404, 422, 425
TspDTI	ATGAA	2 cut(s)	43, 125
Van91I	CCANNNNNTGG	1 cut(s)	272
VpaK11BI	GGWCC	1 cut(s)	263
XhoI	CTCGAG	1 cut(s)	292
XmiI	GTMKAC	1 cut(s)	147

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.