Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp02

Orthogroup ID

OG0002423

Physical Location & Seq

Genomic Coordinates Forward (+)

26419070 .. 26422195

Gene Structure 3126 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.2G248500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 882 bp

ATGGCTTCGTTCACTCAACCCGAAGACGACTCAGTTCCGACCACCGGGTCAACTCGCCCATTCGACGACGATGGTTACCTAGGCTACGACCCCCGTCTCCCCTCCGTGCGATTCGACTCCTTCGTCGCCACTAACTTTGCCGACTCGGAGTCGGTCAAGGATTCGGCCACTGACTCGCCGCTCTTCCACGGCTCCGCCGTAGAGGACGCGTACGCCGCTCAGCAGGCGACGGAGGGCCTTTCTCCTCCGTCGATCTACCCTGAATCGAACGGCCAGGGCTTCGATGGAGGGTTCGGCGAATCCAACGATCCGATTTTGCCGCCTCCGTCGGATATGCTGCCTGAGGAAGGCTTTGCTCTCAGAGAGTGGAGGAGACAGAATGCAATTGAGCTGGAGGAGAAGGAGAAGAGGGAAAAGGAGTTGTTAAACCAAATAATTGAGGAAGCAAATGAATTCAAGATTGACTTCTACCAGAAGAGGAAGATCACTTGTGAGAATAACAAAGCTGCTAACAGGGAAAGGGAGAAGCTGTTCCTGGCCAGTCAAGAGAAGTTCCATGCTGAGGTAGACAAGAACTACTGGAAGGCAGTTGCAGATCTCATTCCCAATGAGGTGCCAGCTATAGAGAAGAAGAGAGGGAAGAAGGATCAGGAAAAGAAACCTTCCATTATTGTGGTACAAGGTCCAAAGCCTGGAAAGCCAACTGAACTTTCAAGGATGAGGCAGATACTTTTAAAATTGAAGCATAATACGCCTCCCCACCTTAAGCCTACACCCCCAGCACCAGCCCCTGCTAATGATGCTAAACCCAGTAGTTCTTCTGCTCCACCCAAGGCTGCTGCTGTGGCAGCCGCCCCTGAGGCTGTAGTTGCTGCTGCATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0006897 GO:0006898 GO:0008150 GO:0009504 GO:0009507 GO:0009524 GO:0009526 GO:0009536 GO:0009941 GO:0012506 GO:0016020 GO:0016192 GO:0030117 GO:0030118 GO:0030120 GO:0030125 GO:0030135 GO:0030136 GO:0030276 GO:0030659 GO:0030662 GO:0030665 GO:0031090 GO:0031410 GO:0031967 GO:0031975 GO:0031982 GO:0032050 GO:0032991 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048475 GO:0051179 GO:0051234 GO:0071944 GO:0072583 GO:0097708 GO:0098588 GO:0098657 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04142 ko04144 ko04721 ko04961 ko05016 ko05100 map04142 map04144 map04721 map04961 map05016 map05100

Pfam Domains

Protein Families

Clathrin_lg_ch

Protein Analysis

294

Amino Acids

32.19

Weight (kDa)

5.19

Isoelectric Point (pI)

58.15

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002423)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40060
fragaria_vesca	FvH4_4g08020 FvH4_7g24260
malus_domestica	MD00G1024200.v1.1 MD00G1047100.v1.1 MD00G1047900.v1.1 MD00G1048400.v1.1 MD00G1062700.v1.1 MD01G1132200.v1.1 MD01G1150700.v1.1 MD01G1152000.v1.1 MD05G1333900.v1.1 MD07G1216800.v1.1 MD07G1219900.v1.1
prunus_persica	Prupe.2G248500_v2.0.a1
pyrus_communis	pycom01g16830 pycom01g16850 pycom01g16880 pycom07g19900 pycom11g19450
rosa_chinensis	RchiOBHm_Chr1g0369851
rosa_laevigata	RLG00000027088 RLG00000027098
rosa_multiflora	Rmu_co8474619.1_g000001 Rmu_sc0008140.1_g000010
rosa_roxburghii	Rroxscaffold_3G00232620 Rroxscaffold_4G00286940 Rroxscaffold_4G00287110 Rroxscaffold_4G00322920
rosa_rugosa	Rorug01G0352700
rosa_samantha	Rh1AG194100 Rh1AG361200 Rh1BG178100 Rh1BG324900 Rh1CG179000 Rh1CG338100 Rh1DG087000 Rh1DG207800 Rh1DG355300
rosa_wichuraiana	Rw0G015470 Rw1G031810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	46, 122
AccB1I	GGYRCC	1 cut(s)	613
AccB7I	CCANNNNNTGG	1 cut(s)	692
AccBSI	CCGCTC	2 cut(s)	181, 218
AccI	GTMKAC	1 cut(s)	567
AccII	CGCG	1 cut(s)	209
AciI	CCGC	5 cut(s)	179, 195, 216, 320, 852
AclWI	GGATC	2 cut(s)	302, 654
AcoI	YGGCCR	3 cut(s)	165, 271, 537
AcsI	RAATTY	1 cut(s)	452
AfaI	GTAC	2 cut(s)	212, 678
AfiI	CCNNNNNNNGG	4 cut(s)	44, 347, 562, 692
AflII	CTTAAG	1 cut(s)	764
AflIII	ACRYGT	1 cut(s)	207
AgsI	TTSAA	3 cut(s)	457, 714, 742
AhdI	GACNNNNNGTC	1 cut(s)	148
AjnI	CCWGG	3 cut(s)	273, 534, 691
AjuI	GAANNNNNNNTTGG	2 cut(s)	694, 726
AloI	GAACNNNNNNTCC	2 cut(s)	515, 547
AluBI	AGCT	4 cut(s)	391, 506, 529, 620
AluI	AGCT	4 cut(s)	391, 506, 529, 620
Alw26I	GTCTC	2 cut(s)	101, 367
AlwI	GGATC	2 cut(s)	302, 654
AlwNI	CAGNNNCTG	1 cut(s)	791
AoxI	GGCC	4 cut(s)	165, 235, 271, 537
ApeKI	GCWGC	7 cut(s)	337, 506, 836, 839, 848, 872, 875
ApoI	RAATTY	1 cut(s)	452
Asp700I	GAANNNNTTC	1 cut(s)	530
AspA2I	CCTAGG	1 cut(s)	79
AspS9I	GGNCC	2 cut(s)	235, 683
AsuC2I	CCSGG	1 cut(s)	46
AvaII	GGWCC	1 cut(s)	683
AvrII	CCTAGG	1 cut(s)	79
AxyI	CCTNAGG	2 cut(s)	342, 858
BalI	TGGCCA	1 cut(s)	539
BanI	GGYRCC	1 cut(s)	613
BbsI	GAAGAC	1 cut(s)	30
BbvCI	CCTCAGC	1 cut(s)	561
BbvI	GCAGC	7 cut(s)	324, 493, 823, 826, 859, 860, 862
BccI	CCATC	2 cut(s)	65, 278
BceAI	ACGGC	3 cut(s)	182, 205, 286
BciT130I	CCWGG	3 cut(s)	275, 536, 693
BcnI	CCSGG	1 cut(s)	46
BcoDI	GTCTC	2 cut(s)	101, 367
BfaI	CTAG	1 cut(s)	80
BfmI	CTRYAG	2 cut(s)	621, 864
BfrI	CTTAAG	1 cut(s)	764
BglI	GCCNNNNNGGC	1 cut(s)	860
BglII	AGATCT	1 cut(s)	595
BlnI	CCTAGG	1 cut(s)	79
BlpI	GCTNAGC	1 cut(s)	219
Bme1390I	CCNGG	4 cut(s)	46, 275, 536, 693
Bme18I	GGWCC	1 cut(s)	683
BmeRI	GACNNNNNGTC	1 cut(s)	148
BmgT120I	GGNCC	2 cut(s)	235, 683
BmiI	GGNNCC	2 cut(s)	193, 615
BmrFI	CCNGG	4 cut(s)	46, 275, 536, 693
BmrI	ACTGGG	1 cut(s)	804
BmsI	GCATC	1 cut(s)	790
BmuI	ACTGGG	1 cut(s)	804
BoxI	GACNNNNGTC	1 cut(s)	93
BpiI	GAAGAC	1 cut(s)	30
BpmI	CTGGAG	1 cut(s)	413
Bpu10I	CCTNAGC	1 cut(s)	561
Bpu1102I	GCTNAGC	1 cut(s)	219
BpuMI	CCSGG	1 cut(s)	46
BsaJI	CCNNGG	4 cut(s)	79, 187, 274, 831
BsaXI	ACNNNNNCTCC	2 cut(s)	515, 545
Bsc4I	CCNNNNNNNGG	4 cut(s)	44, 347, 562, 692
Bse1I	ACTGG	3 cut(s)	540, 584, 810
Bse21I	CCTNAGG	2 cut(s)	342, 858
BseBI	CCWGG	3 cut(s)	275, 536, 693
BseDI	CCNNGG	4 cut(s)	79, 187, 274, 831
BseGI	GGATG	1 cut(s)	723
BseLI	CCNNNNNNNGG	4 cut(s)	44, 347, 562, 692
BseMII	CTCAG	6 cut(s)	45, 233, 333, 373, 552, 849
BseNI	ACTGG	3 cut(s)	540, 584, 810
BseRI	GAGGAG	3 cut(s)	234, 385, 410
BseXI	GCAGC	7 cut(s)	324, 493, 823, 826, 859, 860, 862
BseYI	CCCAGC	1 cut(s)	778
Bsh1236I	CGCG	1 cut(s)	209
BshFI	GGCC	4 cut(s)	167, 237, 273, 539
BshNI	GGYRCC	1 cut(s)	613
BsiSI	CCGG	1 cut(s)	45
BsiWI	CGTACG	1 cut(s)	210
BslI	CCNNNNNNNGG	4 cut(s)	44, 347, 562, 692
BsmAI	GTCTC	2 cut(s)	101, 367
BsmBI	CGTCTC	1 cut(s)	101
BsmI	GAATGC	1 cut(s)	385
BsnI	GGCC	4 cut(s)	167, 237, 273, 539
Bsp143I	GATC	5 cut(s)	252, 307, 483, 595, 646
Bsp1720I	GCTNAGC	1 cut(s)	219
BspACI	CCGC	5 cut(s)	179, 195, 216, 320, 852
BspANI	GGCC	4 cut(s)	167, 237, 273, 539
BspCNI	CTCAG	6 cut(s)	44, 232, 334, 372, 553, 850
BspFNI	CGCG	1 cut(s)	209
BspLI	GGNNCC	2 cut(s)	193, 615
BspPI	GGATC	2 cut(s)	302, 654
BspQI	GCTCTTC	1 cut(s)	188
BspT107I	GGYRCC	1 cut(s)	613
BspTI	CTTAAG	1 cut(s)	764
BsrBI	CCGCTC	2 cut(s)	181, 218
BsrI	ACTGG	3 cut(s)	540, 584, 810
BssECI	CCNNGG	4 cut(s)	79, 187, 274, 831
BssMI	GATC	5 cut(s)	252, 307, 483, 595, 646
BssT1I	CCWWGG	2 cut(s)	79, 831
Bst2UI	CCWGG	3 cut(s)	275, 536, 693
Bst6I	CTCTTC	4 cut(s)	188, 401, 470, 626
BstAFI	CTTAAG	1 cut(s)	764
BstC8I	GCNNGC	2 cut(s)	225, 618
BstDEI	CTNAG	6 cut(s)	31, 219, 342, 359, 561, 858
BstDSI	CCRYGG	1 cut(s)	187
BstEII	GGTNACC	1 cut(s)	74
BstENI	CCTNNNNNAGG	1 cut(s)	345
BstF5I	GGATG	1 cut(s)	723
BstFNI	CGCG	1 cut(s)	209
BstKTI	GATC	5 cut(s)	255, 310, 486, 598, 649
BstMAI	GTCTC	2 cut(s)	101, 367
BstMBI	GATC	5 cut(s)	252, 307, 483, 595, 646
BstMWI	GCNNNNNNNGC	9 cut(s)	215, 224, 697, 751, 800, 845, 848, 860, 869
BstNI	CCWGG	3 cut(s)	275, 536, 693
BstPAI	GACNNNNGTC	1 cut(s)	93
BstPI	GGTNACC	1 cut(s)	74
BstSCI	CCNGG	4 cut(s)	44, 273, 534, 691
BstSFI	CTRYAG	2 cut(s)	621, 864
BstUI	CGCG	1 cut(s)	209
BstV1I	GCAGC	7 cut(s)	324, 493, 823, 826, 859, 860, 862
BstV2I	GAAGAC	1 cut(s)	30
BstX2I	RGATCY	1 cut(s)	595
BstXI	CCANNNNNNTGG	1 cut(s)	673
BstYI	RGATCY	1 cut(s)	595
Bsu36I	CCTNAGG	2 cut(s)	342, 858
BsuRI	GGCC	4 cut(s)	167, 237, 273, 539
BtgI	CCRYGG	1 cut(s)	187
BtsCI	GGATG	1 cut(s)	723
BtsIMutI	CAGTG	1 cut(s)	168
Cac8I	GCNNGC	2 cut(s)	225, 618
CaiI	CAGNNNCTG	1 cut(s)	791
Cfr13I	GGNCC	2 cut(s)	235, 683
CseI	GACGC	1 cut(s)	215
Csp6I	GTAC	2 cut(s)	211, 677
CspCI	CAANNNNNGTGG	2 cut(s)	118, 153
CviAII	CATG	1 cut(s)	557
CviQI	GTAC	2 cut(s)	211, 677
DdeI	CTNAG	6 cut(s)	31, 219, 342, 359, 561, 858
DpnI	GATC	5 cut(s)	254, 309, 485, 597, 648
DpnII	GATC	5 cut(s)	252, 307, 483, 595, 646
DraI	TTTAAA	1 cut(s)	735
DrdI	GACNNNNNNGTC	2 cut(s)	46, 122
DriI	GACNNNNNGTC	1 cut(s)	148
DseDI	GACNNNNNNGTC	2 cut(s)	46, 122
EaeI	YGGCCR	3 cut(s)	165, 271, 537
Eam1104I	CTCTTC	4 cut(s)	188, 401, 470, 626
Eam1105I	GACNNNNNGTC	1 cut(s)	148
EarI	CTCTTC	4 cut(s)	188, 401, 470, 626
EciI	GGCGGA	1 cut(s)	184
Eco130I	CCWWGG	2 cut(s)	79, 831
Eco47I	GGWCC	1 cut(s)	683
Eco81I	CCTNAGG	2 cut(s)	342, 858
Eco91I	GGTNACC	1 cut(s)	74
EcoNI	CCTNNNNNAGG	1 cut(s)	345
EcoO109I	RGGNCCY	1 cut(s)	235
EcoO65I	GGTNACC	1 cut(s)	74
EcoRI	GAATTC	1 cut(s)	452
EcoRII	CCWGG	3 cut(s)	273, 534, 691
EcoT14I	CCWWGG	2 cut(s)	79, 831
ErhI	CCWWGG	2 cut(s)	79, 831
Esp3I	CGTCTC	1 cut(s)	101
FaeI	CATG	1 cut(s)	560
FaiI	YATR	5 cut(s)	335, 558, 623, 747, 880
FalI	AAGNNNNNCTT	2 cut(s)	449, 481
FatI	CATG	1 cut(s)	556
FblI	GTMKAC	1 cut(s)	567
FokI	GGATG	1 cut(s)	730
FspBI	CTAG	1 cut(s)	80
GsaI	CCCAGC	1 cut(s)	782
GsuI	CTGGAG	1 cut(s)	413
HaeIII	GGCC	4 cut(s)	167, 237, 273, 539
HapII	CCGG	1 cut(s)	45
HgaI	GACGC	1 cut(s)	215
Hin1II	CATG	1 cut(s)	560
HincII	GTYRAC	1 cut(s)	51
HindII	GTYRAC	1 cut(s)	51
HinfI	GANTC	9 cut(s)	29, 111, 116, 143, 149, 161, 173, 263, 299
HpaII	CCGG	1 cut(s)	45
Hpy166II	GTNNAC	3 cut(s)	12, 51, 568
Hpy188I	TCNGA	5 cut(s)	39, 148, 312, 331, 362
Hpy188III	TCNNGA	3 cut(s)	457, 545, 650
Hpy8I	GTNNAC	3 cut(s)	12, 51, 568
Hpy99I	CGWCG	6 cut(s)	68, 71, 128, 232, 253, 331
HpyAV	CCTTC	6 cut(s)	130, 341, 394, 577, 637, 672
HpyCH4V	TGCA	3 cut(s)	383, 593, 878
HpyF10VI	GCNNNNNNNGC	9 cut(s)	215, 224, 697, 751, 800, 845, 848, 860, 869
HpyF3I	CTNAG	6 cut(s)	31, 219, 342, 359, 561, 858
Hsp92II	CATG	1 cut(s)	560
Kzo9I	GATC	5 cut(s)	252, 307, 483, 595, 646
LguI	GCTCTTC	1 cut(s)	188
LmnI	GCTCC	2 cut(s)	197, 829
Lsp1109I	GCAGC	7 cut(s)	324, 493, 823, 826, 859, 860, 862
LweI	GCATC	1 cut(s)	790
MaeI	CTAG	1 cut(s)	80
MaeIII	GTNAC	1 cut(s)	74
MalI	GATC	5 cut(s)	254, 309, 485, 597, 648
MbiI	CCGCTC	2 cut(s)	181, 218
MboI	GATC	5 cut(s)	252, 307, 483, 595, 646
MboII	GAAGA	9 cut(s)	35, 175, 418, 487, 493, 640, 643, 652, 810
MfeI	CAATTG	1 cut(s)	384
MflI	RGATCY	1 cut(s)	595
MlsI	TGGCCA	1 cut(s)	539
MluCI	AATT	4 cut(s)	384, 435, 452, 737
MluI	ACGCGT	1 cut(s)	207
MluNI	TGGCCA	1 cut(s)	539
MlyI	GAGTC	5 cut(s)	23, 110, 137, 158, 167
MmeI	TCCRAC	3 cut(s)	62, 309, 327
Mox20I	TGGCCA	1 cut(s)	539
MroXI	GAANNNNTTC	1 cut(s)	530
MscI	TGGCCA	1 cut(s)	539
MseI	TTAA	3 cut(s)	425, 734, 765
MslI	CAYNNNNRTG	1 cut(s)	671
Msp20I	TGGCCA	1 cut(s)	539
MspCI	CTTAAG	1 cut(s)	764
MspI	CCGG	1 cut(s)	45
MspR9I	CCNGG	4 cut(s)	46, 275, 536, 693
MunI	CAATTG	1 cut(s)	384
Mva1269I	GAATGC	1 cut(s)	385
MvaI	CCWGG	3 cut(s)	275, 536, 693
MvnI	CGCG	1 cut(s)	209
MwoI	GCNNNNNNNGC	9 cut(s)	215, 224, 697, 751, 800, 845, 848, 860, 869
NciI	CCSGG	1 cut(s)	46
NdeII	GATC	5 cut(s)	252, 307, 483, 595, 646
NlaIII	CATG	1 cut(s)	560
NlaIV	GGNNCC	2 cut(s)	193, 615
PciSI	GCTCTTC	1 cut(s)	188
PcsI	WCGNNNNNNNCGW	2 cut(s)	120, 195
PctI	GAATGC	1 cut(s)	385
PdmI	GAANNNNTTC	1 cut(s)	530
PfeI	GAWTC	4 cut(s)	111, 161, 263, 299
Pfl23II	CGTACG	1 cut(s)	210
PflMI	CCANNNNNTGG	1 cut(s)	692
PleI	GAGTC	5 cut(s)	23, 110, 137, 157, 167
PpsI	GAGTC	5 cut(s)	23, 110, 137, 157, 167
PshAI	GACNNNNGTC	1 cut(s)	93
Psp6I	CCWGG	3 cut(s)	273, 534, 691
PspEI	GGTNACC	1 cut(s)	74
PspFI	CCCAGC	1 cut(s)	778
PspGI	CCWGG	3 cut(s)	273, 534, 691
PspLI	CGTACG	1 cut(s)	210
PspN4I	GGNNCC	2 cut(s)	193, 615
PspPI	GGNCC	2 cut(s)	235, 683
PstNI	CAGNNNCTG	1 cut(s)	791
PsuI	RGATCY	1 cut(s)	595
RsaI	GTAC	2 cut(s)	212, 678
RsaNI	GTAC	2 cut(s)	211, 677
RseI	CAYNNNNRTG	1 cut(s)	671
SapI	GCTCTTC	1 cut(s)	188
SaqAI	TTAA	3 cut(s)	425, 734, 765
Sau3AI	GATC	5 cut(s)	252, 307, 483, 595, 646
Sau96I	GGNCC	2 cut(s)	235, 683
SchI	GAGTC	5 cut(s)	23, 110, 137, 158, 167
ScrFI	CCNGG	4 cut(s)	46, 275, 536, 693
SfaNI	GCATC	1 cut(s)	790
SfcI	CTRYAG	2 cut(s)	621, 864
SinI	GGWCC	1 cut(s)	683
SmiMI	CAYNNNNRTG	1 cut(s)	671
SmlI	CTYRAG	1 cut(s)	764
SmoI	CTYRAG	1 cut(s)	764
Sse9I	AATT	4 cut(s)	384, 435, 452, 737
SsiI	CCGC	5 cut(s)	179, 195, 216, 320, 852
SspMI	CTAG	1 cut(s)	80
StyD4I	CCNGG	4 cut(s)	44, 273, 534, 691
StyI	CCWWGG	2 cut(s)	79, 831
TaqI	TCGA	5 cut(s)	63, 114, 251, 266, 282
TaqII	GACCGA	1 cut(s)	142
TasI	AATT	4 cut(s)	384, 435, 452, 737
TauI	GCSGC	4 cut(s)	181, 218, 322, 854
TfiI	GAWTC	4 cut(s)	111, 161, 263, 299
Tru1I	TTAA	3 cut(s)	425, 734, 765
Tru9I	TTAA	3 cut(s)	425, 734, 765
TscAI	CASTG	1 cut(s)	175
TseI	GCWGC	7 cut(s)	337, 506, 836, 839, 848, 872, 875
TspDTI	ATGAA	1 cut(s)	465
TspGWI	ACGGA	4 cut(s)	94, 237, 245, 315
TspRI	CASTG	1 cut(s)	175
Van91I	CCANNNNNTGG	1 cut(s)	692
Vha464I	CTTAAG	1 cut(s)	764
VpaK11BI	GGWCC	1 cut(s)	683
XagI	CCTNNNNNAGG	1 cut(s)	345
XapI	RAATTY	1 cut(s)	452
XcmI	CCANNNNNNNNNTGG	1 cut(s)	281
XmaJI	CCTAGG	1 cut(s)	79
XmiI	GTMKAC	1 cut(s)	567
XmnI	GAANNNNTTC	1 cut(s)	530
XspI	CTAG	1 cut(s)	80

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.