Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0002423

Physical Location & Seq

Genomic Coordinates Reverse (-)

18268894 .. 18271241

Gene Structure 2348 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00232620.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 585 bp

ATGTACCGATCCTTAGTCGGTAGAAGCTCAGTCCCCACCGCCGGGTCAACCCGCCCCTTCGACGATGATGACTACCTCCGCTACGAGCATGACTCCGTCGTAGTAGACGACGTGTTCGCGACTGAGACAGAGGCTCCATCTCAGCCGTCGATCTTTGCTGCCGGATCGGACGATCCGATTCTGCCACCTCCGTCCGAGATGCTGCCGGAGGAGGGCTCCGCTCTCACAGAATGGAGGAGGTACGGCTTCGGATTCCGCTTAATGTTTGTTGCTAGTCAAGAGAAGTTTCATGCTGAGGTAGACAAGAACTACTGGAAGACAATTGCAGATCTCATTCCCAATGAGGTGCCAGCTATAGAGAAGAAGAGAGGGAAGAAGGATCAAGAAAAGAAGCCTTCCATTGTCGTTGTGCAAGGTCCAAAACCTTGTAAGCCAACTGAGCTCTCGAGGATGAGGCATATACTTCTAAAATTGAAGCATAATACGCCTCCTCACCTAAAGCCTTCGCCACGGGCACCAGCCGCTGCCCCTGAGGCTGTAGTTACCGCTGTGGCAACTGTGCCTGAGGCTATAGCTACTGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0006897 GO:0006898 GO:0008150 GO:0009504 GO:0009507 GO:0009524 GO:0009526 GO:0009536 GO:0009941 GO:0012506 GO:0016020 GO:0016192 GO:0030117 GO:0030118 GO:0030120 GO:0030125 GO:0030135 GO:0030136 GO:0030276 GO:0030659 GO:0030662 GO:0030665 GO:0031090 GO:0031410 GO:0031967 GO:0031975 GO:0031982 GO:0032050 GO:0032991 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048475 GO:0051179 GO:0051234 GO:0071944 GO:0072583 GO:0097708 GO:0098588 GO:0098657 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04142 ko04144 ko04721 ko04961 ko05016 ko05100 map04142 map04144 map04721 map04961 map05016 map05100

Pfam Domains

Protein Families

Clathrin_lg_ch

Protein Analysis

194

Amino Acids

21.43

Weight (kDa)

6.22

Isoelectric Point (pI)

56.24

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002423)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40060
fragaria_vesca	FvH4_4g08020 FvH4_7g24260
malus_domestica	MD00G1024200.v1.1 MD00G1047100.v1.1 MD00G1047900.v1.1 MD00G1048400.v1.1 MD00G1062700.v1.1 MD01G1132200.v1.1 MD01G1150700.v1.1 MD01G1152000.v1.1 MD05G1333900.v1.1 MD07G1216800.v1.1 MD07G1219900.v1.1
prunus_persica	Prupe.2G248500_v2.0.a1
pyrus_communis	pycom01g16830 pycom01g16850 pycom01g16880 pycom07g19900 pycom11g19450
rosa_chinensis	RchiOBHm_Chr1g0369851
rosa_laevigata	RLG00000027088 RLG00000027098
rosa_multiflora	Rmu_co8474619.1_g000001 Rmu_sc0008140.1_g000010
rosa_roxburghii	Rroxscaffold_3G00232620 Rroxscaffold_4G00286940 Rroxscaffold_4G00287110 Rroxscaffold_4G00322920
rosa_rugosa	Rorug01G0352700
rosa_samantha	Rh1AG194100 Rh1AG361200 Rh1BG178100 Rh1BG324900 Rh1CG179000 Rh1CG338100 Rh1DG087000 Rh1DG207800 Rh1DG355300
rosa_wichuraiana	Rw0G015470 Rw1G031810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	346, 514
AccBSI	CCGCTC	1 cut(s)	221
AccI	GTMKAC	2 cut(s)	105, 300
AccII	CGCG	1 cut(s)	119
AciI	CCGC	7 cut(s)	39, 52, 79, 219, 256, 522, 546
AclWI	GGATC	4 cut(s)	3, 167, 172, 387
AfaI	GTAC	2 cut(s)	5, 242
AfiI	CCNNNNNNNGG	3 cut(s)	41, 42, 212
AflIII	ACRYGT	1 cut(s)	111
AgsI	TTSAA	1 cut(s)	475
AjiI	CACGTC	1 cut(s)	112
AluBI	AGCT	4 cut(s)	27, 353, 442, 575
AluI	AGCT	4 cut(s)	27, 353, 442, 575
Alw21I	GWGCWC	1 cut(s)	444
Alw26I	GTCTC	1 cut(s)	119
AlwI	GGATC	4 cut(s)	3, 167, 172, 387
AlwNI	CAGNNNCTG	1 cut(s)	524
Ama87I	CYCGRG	1 cut(s)	445
ApeKI	GCWGC	3 cut(s)	158, 202, 524
ArsI	GACNNNNNNTTYG	2 cut(s)	98, 130
AspS9I	GGNCC	1 cut(s)	416
AsuC2I	CCSGG	1 cut(s)	43
AsuHPI	GGTGA	1 cut(s)	485
AvaI	CYCGRG	1 cut(s)	445
AvaII	GGWCC	1 cut(s)	416
AxyI	CCTNAGG	2 cut(s)	531, 564
BaeGI	GKGCMC	1 cut(s)	517
BanI	GGYRCC	2 cut(s)	346, 514
BanII	GRGCYC	2 cut(s)	218, 444
BbsI	GAAGAC	1 cut(s)	323
Bbv12I	GWGCWC	1 cut(s)	444
BbvCI	CCTCAGC	1 cut(s)	294
BbvI	GCAGC	3 cut(s)	145, 189, 511
BccI	CCATC	1 cut(s)	145
BceAI	ACGGC	2 cut(s)	130, 259
BcnI	CCSGG	1 cut(s)	43
BcoDI	GTCTC	1 cut(s)	119
BfaI	CTAG	1 cut(s)	273
BfmI	CTRYAG	3 cut(s)	354, 537, 570
BglI	GCCNNNNNGGC	1 cut(s)	533
BglII	AGATCT	1 cut(s)	328
BisI	GCNGC	4 cut(s)	159, 203, 522, 525
BlsI	GCNGC	4 cut(s)	160, 204, 523, 526
Bme1390I	CCNGG	1 cut(s)	43
Bme18I	GGWCC	1 cut(s)	416
BmeT110I	CYCGRG	1 cut(s)	445
BmgBI	CACGTC	1 cut(s)	112
BmgT120I	GGNCC	1 cut(s)	416
BmiI	GGNNCC	4 cut(s)	135, 217, 348, 516
BmrFI	CCNGG	1 cut(s)	43
BmsI	GCATC	1 cut(s)	189
BpiI	GAAGAC	1 cut(s)	323
BplI	GAGNNNNNCTC	4 cut(s)	77, 109, 200, 232
Bpu10I	CCTNAGC	1 cut(s)	294
BpuMI	CCSGG	1 cut(s)	43
BsaJI	CCNNGG	1 cut(s)	509
BsaXI	ACNNNNNCTCC	2 cut(s)	118, 148
Bsc4I	CCNNNNNNNGG	3 cut(s)	41, 42, 212
Bse1I	ACTGG	1 cut(s)	317
Bse21I	CCTNAGG	2 cut(s)	531, 564
BseDI	CCNNGG	1 cut(s)	509
BseGI	GGATG	1 cut(s)	456
BseLI	CCNNNNNNNGG	3 cut(s)	41, 42, 212
BseMII	CTCAG	7 cut(s)	42, 114, 155, 285, 429, 522, 555
BseNI	ACTGG	1 cut(s)	317
BseRI	GAGGAG	3 cut(s)	224, 250, 480
BseSI	GKGCMC	1 cut(s)	517
BseXI	GCAGC	3 cut(s)	145, 189, 511
Bsh1236I	CGCG	1 cut(s)	119
BshNI	GGYRCC	2 cut(s)	346, 514
BsiHKAI	GWGCWC	1 cut(s)	444
BsiHKCI	CYCGRG	1 cut(s)	445
BsiSI	CCGG	3 cut(s)	42, 162, 206
BslFI	GGGAC	1 cut(s)	17
BslI	CCNNNNNNNGG	3 cut(s)	41, 42, 212
BsmAI	GTCTC	1 cut(s)	119
BsmFI	GGGAC	1 cut(s)	17
BsoBI	CYCGRG	1 cut(s)	445
Bsp1286I	GDGCHC	3 cut(s)	218, 444, 517
Bsp143I	GATC	6 cut(s)	8, 150, 164, 172, 328, 379
Bsp68I	TCGCGA	1 cut(s)	119
BspACI	CCGC	7 cut(s)	39, 52, 79, 219, 256, 522, 546
BspCNI	CTCAG	7 cut(s)	41, 115, 154, 286, 430, 523, 556
BspFNI	CGCG	1 cut(s)	119
BspLI	GGNNCC	4 cut(s)	135, 217, 348, 516
BspPI	GGATC	4 cut(s)	3, 167, 172, 387
BspT107I	GGYRCC	2 cut(s)	346, 514
BsrBI	CCGCTC	1 cut(s)	221
BsrI	ACTGG	1 cut(s)	317
BssECI	CCNNGG	1 cut(s)	509
BssMI	GATC	6 cut(s)	8, 150, 164, 172, 328, 379
Bst4CI	ACNGT	1 cut(s)	559
Bst6I	CTCTTC	1 cut(s)	359
BstC8I	GCNNGC	1 cut(s)	351
BstDEI	CTNAG	8 cut(s)	13, 28, 123, 141, 294, 438, 531, 564
BstDSI	CCRYGG	1 cut(s)	509
BstF5I	GGATG	1 cut(s)	456
BstFNI	CGCG	1 cut(s)	119
BstKTI	GATC	6 cut(s)	11, 153, 167, 175, 331, 382
BstMAI	GTCTC	1 cut(s)	119
BstMBI	GATC	6 cut(s)	8, 150, 164, 172, 328, 379
BstMWI	GCNNNNNNNGC	4 cut(s)	439, 484, 521, 533
BstSCI	CCNGG	1 cut(s)	41
BstSFI	CTRYAG	3 cut(s)	354, 537, 570
BstSLI	GKGCMC	1 cut(s)	517
BstUI	CGCG	1 cut(s)	119
BstV1I	GCAGC	3 cut(s)	145, 189, 511
BstV2I	GAAGAC	1 cut(s)	323
BstX2I	RGATCY	1 cut(s)	328
BstYI	RGATCY	1 cut(s)	328
Bsu36I	CCTNAGG	2 cut(s)	531, 564
BtgI	CCRYGG	1 cut(s)	509
BtrI	CACGTC	1 cut(s)	112
BtsCI	GGATG	1 cut(s)	456
BtuMI	TCGCGA	1 cut(s)	119
Cac8I	GCNNGC	1 cut(s)	351
CaiI	CAGNNNCTG	1 cut(s)	524
Cfr13I	GGNCC	1 cut(s)	416
Csp6I	GTAC	2 cut(s)	4, 241
CviAII	CATG	2 cut(s)	89, 290
CviQI	GTAC	2 cut(s)	4, 241
DdeI	CTNAG	8 cut(s)	13, 28, 123, 141, 294, 438, 531, 564
DpnI	GATC	6 cut(s)	10, 152, 166, 174, 330, 381
DpnII	GATC	6 cut(s)	8, 150, 164, 172, 328, 379
Eam1104I	CTCTTC	1 cut(s)	359
EarI	CTCTTC	1 cut(s)	359
Ecl136II	GAGCTC	1 cut(s)	442
Eco24I	GRGCYC	2 cut(s)	218, 444
Eco47I	GGWCC	1 cut(s)	416
Eco53kI	GAGCTC	1 cut(s)	442
Eco81I	CCTNAGG	2 cut(s)	531, 564
Eco88I	CYCGRG	1 cut(s)	445
EcoICRI	GAGCTC	1 cut(s)	442
EcoT38I	GRGCYC	2 cut(s)	218, 444
FaeI	CATG	2 cut(s)	92, 293
FaiI	YATR	7 cut(s)	90, 291, 356, 459, 461, 480, 572
FaqI	GGGAC	1 cut(s)	17
FatI	CATG	2 cut(s)	88, 289
FauI	CCCGC	1 cut(s)	59
FblI	GTMKAC	2 cut(s)	105, 300
Fnu4HI	GCNGC	4 cut(s)	159, 203, 522, 525
FokI	GGATG	1 cut(s)	463
FriOI	GRGCYC	2 cut(s)	218, 444
Fsp4HI	GCNGC	4 cut(s)	159, 203, 522, 525
FspBI	CTAG	1 cut(s)	273
GluI	GCNGC	4 cut(s)	159, 203, 522, 525
HapII	CCGG	3 cut(s)	42, 162, 206
Hin1II	CATG	2 cut(s)	92, 293
HincII	GTYRAC	1 cut(s)	48
HindII	GTYRAC	1 cut(s)	48
HinfI	GANTC	3 cut(s)	92, 178, 252
HpaII	CCGG	3 cut(s)	42, 162, 206
HphI	GGTGA	1 cut(s)	485
Hpy166II	GTNNAC	3 cut(s)	48, 106, 301
Hpy188I	TCNGA	4 cut(s)	169, 177, 196, 251
Hpy188III	TCNNGA	4 cut(s)	118, 278, 383, 445
Hpy8I	GTNNAC	3 cut(s)	48, 106, 301
Hpy99I	CGWCG	4 cut(s)	65, 101, 113, 151
HpyAV	CCTTC	4 cut(s)	67, 370, 405, 513
HpyCH4III	ACNGT	1 cut(s)	559
HpyCH4IV	ACGT	1 cut(s)	111
HpyCH4V	TGCA	2 cut(s)	326, 412
HpyF10VI	GCNNNNNNNGC	4 cut(s)	439, 484, 521, 533
HpyF3I	CTNAG	8 cut(s)	13, 28, 123, 141, 294, 438, 531, 564
HpySE526I	ACGT	1 cut(s)	111
Hsp92II	CATG	2 cut(s)	92, 293
Kzo9I	GATC	6 cut(s)	8, 150, 164, 172, 328, 379
LmnI	GCTCC	2 cut(s)	139, 221
LpnPI	CCDG	8 cut(s)	55, 175, 219, 298, 363, 531, 543, 576
Lsp1109I	GCAGC	3 cut(s)	145, 189, 511
LweI	GCATC	1 cut(s)	189
MaeI	CTAG	1 cut(s)	273
MaeII	ACGT	1 cut(s)	111
MaeIII	GTNAC	1 cut(s)	541
MalI	GATC	6 cut(s)	10, 152, 166, 174, 330, 381
MbiI	CCGCTC	1 cut(s)	221
MboI	GATC	6 cut(s)	8, 150, 164, 172, 328, 379
MboII	GAAGA	4 cut(s)	328, 373, 376, 385
MfeI	CAATTG	1 cut(s)	321
MflI	RGATCY	1 cut(s)	328
MhlI	GDGCHC	3 cut(s)	218, 444, 517
MluCI	AATT	2 cut(s)	321, 470
MlyI	GAGTC	1 cut(s)	86
MseI	TTAA	1 cut(s)	260
MspA1I	CMGCKG	2 cut(s)	524, 548
MspI	CCGG	3 cut(s)	42, 162, 206
MspR9I	CCNGG	1 cut(s)	43
MunI	CAATTG	1 cut(s)	321
MvnI	CGCG	1 cut(s)	119
MwoI	GCNNNNNNNGC	4 cut(s)	439, 484, 521, 533
NciI	CCSGG	1 cut(s)	43
NdeII	GATC	6 cut(s)	8, 150, 164, 172, 328, 379
NlaIII	CATG	2 cut(s)	92, 293
NlaIV	GGNNCC	4 cut(s)	135, 217, 348, 516
NruI	TCGCGA	1 cut(s)	119
PaeR7I	CTCGAG	1 cut(s)	445
PcsI	WCGNNNNNNNCGW	2 cut(s)	105, 173
PfeI	GAWTC	2 cut(s)	178, 252
PflFI	GACNNNGTC	1 cut(s)	95
PkrI	GCNGC	4 cut(s)	160, 204, 523, 526
PleI	GAGTC	1 cut(s)	86
PpsI	GAGTC	1 cut(s)	86
Psp124BI	GAGCTC	1 cut(s)	444
PspN4I	GGNNCC	4 cut(s)	135, 217, 348, 516
PspPI	GGNCC	1 cut(s)	416
PstNI	CAGNNNCTG	1 cut(s)	524
PsuI	RGATCY	1 cut(s)	328
PsyI	GACNNNGTC	1 cut(s)	95
RruI	TCGCGA	1 cut(s)	119
RsaI	GTAC	2 cut(s)	5, 242
RsaNI	GTAC	2 cut(s)	4, 241
SacI	GAGCTC	1 cut(s)	444
SaqAI	TTAA	1 cut(s)	260
SatI	GCNGC	4 cut(s)	159, 203, 522, 525
Sau3AI	GATC	6 cut(s)	8, 150, 164, 172, 328, 379
Sau96I	GGNCC	1 cut(s)	416
SchI	GAGTC	1 cut(s)	86
ScrFI	CCNGG	1 cut(s)	43
SduI	GDGCHC	3 cut(s)	218, 444, 517
SfaNI	GCATC	1 cut(s)	189
SfcI	CTRYAG	3 cut(s)	354, 537, 570
Sfr274I	CTCGAG	1 cut(s)	445
SinI	GGWCC	1 cut(s)	416
SlaI	CTCGAG	1 cut(s)	445
SmlI	CTYRAG	1 cut(s)	445
SmoI	CTYRAG	1 cut(s)	445
Sse9I	AATT	2 cut(s)	321, 470
SsiI	CCGC	7 cut(s)	39, 52, 79, 219, 256, 522, 546
SspMI	CTAG	1 cut(s)	273
SstI	GAGCTC	1 cut(s)	444
StyD4I	CCNGG	1 cut(s)	41
TaaI	ACNGT	1 cut(s)	559
TaiI	ACGT	1 cut(s)	114
TaqI	TCGA	3 cut(s)	60, 149, 446
TasI	AATT	2 cut(s)	321, 470
TauI	GCSGC	1 cut(s)	524
TfiI	GAWTC	2 cut(s)	178, 252
Tru1I	TTAA	1 cut(s)	260
Tru9I	TTAA	1 cut(s)	260
TseI	GCWGC	3 cut(s)	158, 202, 524
TspDTI	ATGAA	1 cut(s)	278
TspGWI	ACGGA	2 cut(s)	85, 180
Tth111I	GACNNNGTC	1 cut(s)	95
VpaK11BI	GGWCC	1 cut(s)	416
XhoI	CTCGAG	1 cut(s)	445
XmiI	GTMKAC	2 cut(s)	105, 300
XspI	CTAG	1 cut(s)	273

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.