Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0002423

Physical Location & Seq

Genomic Coordinates Forward (+)

29456030 .. 29457339

Gene Structure 1310 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1216800.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 324 bp

ATGCTGCCTAAGGAAGGCTTCGCTCTCAGAGAATGGAGGTGGCAGAATGCGATTAATGTCGAGGAGAAGGAGAAGAAAGAAAAAGAGTTATTGGTTCAAATAATTGAGCAAGCAGATGAATTCAAGGTGGGATTCTACCAAAAAAGGAAGATCACTACTAAAAATAACAAGGCTGCTAACAAGGAAAGGGAGAAGTTTCATGCTGAGGTCGACAAGAACTACTGGAAGGCAATTGCGAATCTCATCCCCAATGAGGTGCCAGCAGTAGAGAAGAAGAAAATGAAGAAGGATACGGAAAAGAAGCCATCCATTCTTGTTGTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0006897 GO:0006898 GO:0008150 GO:0009504 GO:0009507 GO:0009524 GO:0009526 GO:0009536 GO:0009941 GO:0012506 GO:0016020 GO:0016192 GO:0030117 GO:0030118 GO:0030120 GO:0030125 GO:0030135 GO:0030136 GO:0030276 GO:0030659 GO:0030662 GO:0030665 GO:0031090 GO:0031410 GO:0031967 GO:0031975 GO:0031982 GO:0032050 GO:0032991 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048475 GO:0051179 GO:0051234 GO:0071944 GO:0072583 GO:0097708 GO:0098588 GO:0098657 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04142 ko04144 ko04721 ko04961 ko05016 ko05100 map04142 map04144 map04721 map04961 map05016 map05100

Pfam Domains

Protein Families

Clathrin_lg_ch

Protein Analysis

108

Amino Acids

12.71

Weight (kDa)

9.55

Isoelectric Point (pI)

38.85

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0002423)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40060
fragaria_vesca	FvH4_4g08020 FvH4_7g24260
malus_domestica	MD00G1024200.v1.1 MD00G1047100.v1.1 MD00G1047900.v1.1 MD00G1048400.v1.1 MD00G1062700.v1.1 MD01G1132200.v1.1 MD01G1150700.v1.1 MD01G1152000.v1.1 MD05G1333900.v1.1 MD07G1216800.v1.1 MD07G1219900.v1.1
prunus_persica	Prupe.2G248500_v2.0.a1
pyrus_communis	pycom01g16830 pycom01g16850 pycom01g16880 pycom07g19900 pycom11g19450
rosa_chinensis	RchiOBHm_Chr1g0369851
rosa_laevigata	RLG00000027088 RLG00000027098
rosa_multiflora	Rmu_co8474619.1_g000001 Rmu_sc0008140.1_g000010
rosa_roxburghii	Rroxscaffold_3G00232620 Rroxscaffold_4G00286940 Rroxscaffold_4G00287110 Rroxscaffold_4G00322920
rosa_rugosa	Rorug01G0352700
rosa_samantha	Rh1AG194100 Rh1AG361200 Rh1BG178100 Rh1BG324900 Rh1CG179000 Rh1CG338100 Rh1DG087000 Rh1DG207800 Rh1DG355300
rosa_wichuraiana	Rw0G015470 Rw1G031810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	256
AccI	GTMKAC	1 cut(s)	210
AcsI	RAATTY	1 cut(s)	119
AfiI	CCNNNNNNNGG	2 cut(s)	14, 253
AgsI	TTSAA	2 cut(s)	98, 124
ApeKI	GCWGC	2 cut(s)	4, 173
ApoI	RAATTY	1 cut(s)	119
AseI	ATTAAT	1 cut(s)	54
AxyI	CCTNAGG	1 cut(s)	9
BanI	GGYRCC	1 cut(s)	256
BbvCI	CCTCAGC	1 cut(s)	204
BbvI	GCAGC	1 cut(s)	160
BccI	CCATC	1 cut(s)	313
BciVI	GTATCC	1 cut(s)	283
BfuI	GTATCC	1 cut(s)	283
BisI	GCNGC	2 cut(s)	5, 174
BlsI	GCNGC	2 cut(s)	6, 175
BmiI	GGNNCC	1 cut(s)	258
Bpu10I	CCTNAGC	1 cut(s)	204
Bsc4I	CCNNNNNNNGG	2 cut(s)	14, 253
Bse1I	ACTGG	1 cut(s)	227
Bse21I	CCTNAGG	1 cut(s)	9
BseGI	GGATG	2 cut(s)	243, 305
BseLI	CCNNNNNNNGG	2 cut(s)	14, 253
BseMII	CTCAG	2 cut(s)	40, 195
BseNI	ACTGG	1 cut(s)	227
BseRI	GAGGAG	1 cut(s)	77
BseXI	GCAGC	1 cut(s)	160
BshNI	GGYRCC	1 cut(s)	256
BslI	CCNNNNNNNGG	2 cut(s)	14, 253
BsmI	GAATGC	1 cut(s)	52
Bsp143I	GATC	1 cut(s)	150
BspCNI	CTCAG	2 cut(s)	39, 196
BspLI	GGNNCC	1 cut(s)	258
BspT107I	GGYRCC	1 cut(s)	256
BsrI	ACTGG	1 cut(s)	227
BssMI	GATC	1 cut(s)	150
BstC8I	GCNNGC	2 cut(s)	111, 261
BstDEI	CTNAG	3 cut(s)	9, 26, 204
BstENI	CCTNNNNNAGG	1 cut(s)	12
BstF5I	GGATG	2 cut(s)	243, 305
BstKTI	GATC	1 cut(s)	153
BstMBI	GATC	1 cut(s)	150
BstV1I	GCAGC	1 cut(s)	160
Bsu36I	CCTNAGG	1 cut(s)	9
BsuI	GTATCC	1 cut(s)	283
BtsCI	GGATG	2 cut(s)	243, 305
Cac8I	GCNNGC	2 cut(s)	111, 261
CviAII	CATG	1 cut(s)	200
CviJI	RGCY	3 cut(s)	18, 173, 304
CviKI_1	RGCY	3 cut(s)	18, 173, 304
DdeI	CTNAG	3 cut(s)	9, 26, 204
DpnI	GATC	1 cut(s)	152
DpnII	GATC	1 cut(s)	150
Eco81I	CCTNAGG	1 cut(s)	9
EcoNI	CCTNNNNNAGG	1 cut(s)	12
EcoRI	GAATTC	1 cut(s)	119
FaeI	CATG	1 cut(s)	203
FaiI	YATR	1 cut(s)	201
FalI	AAGNNNNNCTT	1 cut(s)	34
FatI	CATG	1 cut(s)	199
FblI	GTMKAC	1 cut(s)	210
Fnu4HI	GCNGC	2 cut(s)	5, 174
FokI	GGATG	2 cut(s)	230, 292
Fsp4HI	GCNGC	2 cut(s)	5, 174
GluI	GCNGC	2 cut(s)	5, 174
Hin1II	CATG	1 cut(s)	203
HincII	GTYRAC	1 cut(s)	211
HindII	GTYRAC	1 cut(s)	211
HinfI	GANTC	2 cut(s)	132, 238
Hpy166II	GTNNAC	1 cut(s)	211
Hpy188I	TCNGA	2 cut(s)	29, 323
Hpy8I	GTNNAC	1 cut(s)	211
HpyAV	CCTTC	4 cut(s)	8, 61, 220, 280
HpyF3I	CTNAG	3 cut(s)	9, 26, 204
Hsp92II	CATG	1 cut(s)	203
Kzo9I	GATC	1 cut(s)	150
LpnPI	CCDG	2 cut(s)	208, 273
Lsp1109I	GCAGC	1 cut(s)	160
MalI	GATC	1 cut(s)	152
MboI	GATC	1 cut(s)	150
MboII	GAAGA	5 cut(s)	85, 160, 283, 286, 295
MfeI	CAATTG	1 cut(s)	231
MluCI	AATT	3 cut(s)	102, 119, 231
MnlI	CCTC	4 cut(s)	30, 55, 199, 247
MseI	TTAA	1 cut(s)	54
MunI	CAATTG	1 cut(s)	231
Mva1269I	GAATGC	1 cut(s)	52
NdeII	GATC	1 cut(s)	150
NlaIII	CATG	1 cut(s)	203
NlaIV	GGNNCC	1 cut(s)	258
PctI	GAATGC	1 cut(s)	52
PfeI	GAWTC	2 cut(s)	132, 238
PkrI	GCNGC	2 cut(s)	6, 175
PshBI	ATTAAT	1 cut(s)	54
PspN4I	GGNNCC	1 cut(s)	258
SalI	GTCGAC	1 cut(s)	209
SaqAI	TTAA	1 cut(s)	54
SatI	GCNGC	2 cut(s)	5, 174
Sau3AI	GATC	1 cut(s)	150
SetI	ASST	4 cut(s)	41, 129, 210, 258
SgeI	CNNG	9 cut(s)	73, 122, 136, 181, 193, 212, 226, 235, 272
Sse9I	AATT	3 cut(s)	102, 119, 231
TaqI	TCGA	2 cut(s)	60, 210
TasI	AATT	3 cut(s)	102, 119, 231
TfiI	GAWTC	2 cut(s)	132, 238
Tru1I	TTAA	1 cut(s)	54
Tru9I	TTAA	1 cut(s)	54
TseI	GCWGC	2 cut(s)	4, 173
TspDTI	ATGAA	3 cut(s)	132, 188, 296
TspGWI	ACGGA	1 cut(s)	308
VspI	ATTAAT	1 cut(s)	54
XagI	CCTNNNNNAGG	1 cut(s)	12
XapI	RAATTY	1 cut(s)	119
XmiI	GTMKAC	1 cut(s)	210

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.