Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0002423

Physical Location & Seq

Genomic Coordinates Reverse (-)

11562543 .. 11563755

Gene Structure 1213 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1062700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 513 bp

ATGGTTGAATTCTGTGAGGTTAATGCGATTCATCCCGAGGAGAAGGAGAAGAGAGAAAAGGAGTTGTTGGTTCAAATAATTGAGGAAGCAGATGAATTCAAGGTGGGATTCTACCAGAAGAGGAAGATCACTACTGAAAATAACAAGGCTGCTAACAGGGAAAGGGAGAAGCTAATCAAGAGAAGTTTCATTGCTGAGGTAGACAAGAACTACTGGAAGGCAATTGCGGACCTCATCCCCAATGAGGTGCCAGCAATCGAGAAGAAGATAGGGAAGAAGGATACGGAAAAGAAGCCATCCATTCTCGTTGTCCAAGGTCCAAAGCCTGGAAAGCCAACCGAGCTTTCAAGGATGAGGCAGATACTTTTAAAATTGAAGCATAATACACCTCCCCACCTTAAGCCTTCACCGCCAGACCCAGCTCCCACCAAGGATGCAAAACCGAGTACTTCTGCTCCCCCCAAGGCTGCAGTTGTGGCGGCTACCCCCGAGGCTGTAGTTGCTGTTTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0006897 GO:0006898 GO:0008150 GO:0009504 GO:0009507 GO:0009524 GO:0009526 GO:0009536 GO:0009941 GO:0012506 GO:0016020 GO:0016192 GO:0030117 GO:0030118 GO:0030120 GO:0030125 GO:0030135 GO:0030136 GO:0030276 GO:0030659 GO:0030662 GO:0030665 GO:0031090 GO:0031410 GO:0031967 GO:0031975 GO:0031982 GO:0032050 GO:0032991 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048475 GO:0051179 GO:0051234 GO:0071944 GO:0072583 GO:0097708 GO:0098588 GO:0098657 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04142 ko04144 ko04721 ko04961 ko05016 ko05100 map04142 map04144 map04721 map04961 map05016 map05100

Pfam Domains

Protein Families

Clathrin_lg_ch

Protein Analysis

171

Amino Acids

19.03

Weight (kDa)

9.39

Isoelectric Point (pI)

43.04

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002423)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40060
fragaria_vesca	FvH4_4g08020 FvH4_7g24260
malus_domestica	MD00G1024200.v1.1 MD00G1047100.v1.1 MD00G1047900.v1.1 MD00G1048400.v1.1 MD00G1062700.v1.1 MD01G1132200.v1.1 MD01G1150700.v1.1 MD01G1152000.v1.1 MD05G1333900.v1.1 MD07G1216800.v1.1 MD07G1219900.v1.1
prunus_persica	Prupe.2G248500_v2.0.a1
pyrus_communis	pycom01g16830 pycom01g16850 pycom01g16880 pycom07g19900 pycom11g19450
rosa_chinensis	RchiOBHm_Chr1g0369851
rosa_laevigata	RLG00000027088 RLG00000027098
rosa_multiflora	Rmu_co8474619.1_g000001 Rmu_sc0008140.1_g000010
rosa_roxburghii	Rroxscaffold_3G00232620 Rroxscaffold_4G00286940 Rroxscaffold_4G00287110 Rroxscaffold_4G00322920
rosa_rugosa	Rorug01G0352700
rosa_samantha	Rh1AG194100 Rh1AG361200 Rh1BG178100 Rh1BG324900 Rh1CG179000 Rh1CG338100 Rh1DG087000 Rh1DG207800 Rh1DG355300
rosa_wichuraiana	Rw0G015470 Rw1G031810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	247
AccB7I	CCANNNNNTGG	1 cut(s)	326
AccI	GTMKAC	1 cut(s)	201
AciI	CCGC	3 cut(s)	227, 410, 479
AcsI	RAATTY	2 cut(s)	8, 95
AfaI	GTAC	1 cut(s)	448
AfiI	CCNNNNNNNGG	2 cut(s)	244, 326
AflII	CTTAAG	1 cut(s)	398
AgsI	TTSAA	5 cut(s)	8, 74, 100, 348, 376
AjnI	CCWGG	1 cut(s)	325
AjuI	GAANNNNNNNTTGG	2 cut(s)	328, 360
AluBI	AGCT	3 cut(s)	172, 343, 422
AluI	AGCT	3 cut(s)	172, 343, 422
Ama87I	CYCGRG	2 cut(s)	35, 488
ApeKI	GCWGC	2 cut(s)	149, 467
ApoI	RAATTY	2 cut(s)	8, 95
AspS9I	GGNCC	2 cut(s)	229, 317
AsuHPI	GGTGA	1 cut(s)	399
AvaI	CYCGRG	2 cut(s)	35, 488
AvaII	GGWCC	2 cut(s)	229, 317
BanI	GGYRCC	1 cut(s)	247
BbvCI	CCTCAGC	1 cut(s)	195
BbvI	GCAGC	2 cut(s)	136, 454
BccI	CCATC	1 cut(s)	304
BciT130I	CCWGG	1 cut(s)	327
BciVI	GTATCC	1 cut(s)	274
BfmI	CTRYAG	2 cut(s)	468, 495
BfrI	CTTAAG	1 cut(s)	398
BfuI	GTATCC	1 cut(s)	274
BisI	GCNGC	3 cut(s)	150, 468, 480
BlsI	GCNGC	3 cut(s)	151, 469, 481
BmcAI	AGTACT	1 cut(s)	448
Bme1390I	CCNGG	1 cut(s)	327
Bme18I	GGWCC	2 cut(s)	229, 317
BmeT110I	CYCGRG	2 cut(s)	35, 488
BmgT120I	GGNCC	2 cut(s)	229, 317
BmiI	GGNNCC	1 cut(s)	249
BmrFI	CCNGG	1 cut(s)	327
BmsI	GCATC	1 cut(s)	424
Bpu10I	CCTNAGC	1 cut(s)	195
BsaJI	CCNNGG	5 cut(s)	36, 313, 429, 462, 489
BsaXI	ACNNNNNCTCC	2 cut(s)	439, 469
Bsc4I	CCNNNNNNNGG	2 cut(s)	244, 326
Bse1I	ACTGG	1 cut(s)	218
Bse3DI	GCAATG	1 cut(s)	189
BseBI	CCWGG	1 cut(s)	327
BseDI	CCNNGG	5 cut(s)	36, 313, 429, 462, 489
BseGI	GGATG	5 cut(s)	31, 234, 296, 357, 439
BseLI	CCNNNNNNNGG	2 cut(s)	244, 326
BseMI	GCAATG	1 cut(s)	189
BseMII	CTCAG	1 cut(s)	186
BseNI	ACTGG	1 cut(s)	218
BseRI	GAGGAG	1 cut(s)	53
BseXI	GCAGC	2 cut(s)	136, 454
BseYI	CCCAGC	1 cut(s)	418
BshNI	GGYRCC	1 cut(s)	247
BsiHKCI	CYCGRG	2 cut(s)	35, 488
BslI	CCNNNNNNNGG	2 cut(s)	244, 326
BsoBI	CYCGRG	2 cut(s)	35, 488
Bsp143I	GATC	1 cut(s)	126
BspACI	CCGC	3 cut(s)	227, 410, 479
BspCNI	CTCAG	1 cut(s)	187
BspLI	GGNNCC	1 cut(s)	249
BspMAI	CTGCAG	1 cut(s)	472
BspT107I	GGYRCC	1 cut(s)	247
BspTI	CTTAAG	1 cut(s)	398
BsrDI	GCAATG	1 cut(s)	189
BsrI	ACTGG	1 cut(s)	218
BssECI	CCNNGG	5 cut(s)	36, 313, 429, 462, 489
BssMI	GATC	1 cut(s)	126
BssT1I	CCWWGG	3 cut(s)	313, 429, 462
Bst2UI	CCWGG	1 cut(s)	327
Bst6I	CTCTTC	2 cut(s)	44, 113
BstAFI	CTTAAG	1 cut(s)	398
BstC8I	GCNNGC	1 cut(s)	252
BstDEI	CTNAG	1 cut(s)	195
BstF5I	GGATG	5 cut(s)	31, 234, 296, 357, 439
BstKTI	GATC	1 cut(s)	129
BstMBI	GATC	1 cut(s)	126
BstMWI	GCNNNNNNNGC	5 cut(s)	331, 340, 409, 476, 500
BstNI	CCWGG	1 cut(s)	327
BstSCI	CCNGG	1 cut(s)	325
BstSFI	CTRYAG	2 cut(s)	468, 495
BstV1I	GCAGC	2 cut(s)	136, 454
BsuI	GTATCC	1 cut(s)	274
BtsCI	GGATG	5 cut(s)	31, 234, 296, 357, 439
Cac8I	GCNNGC	1 cut(s)	252
Cfr13I	GGNCC	2 cut(s)	229, 317
Csp6I	GTAC	1 cut(s)	447
CviQI	GTAC	1 cut(s)	447
DdeI	CTNAG	1 cut(s)	195
DpnI	GATC	1 cut(s)	128
DpnII	GATC	1 cut(s)	126
DraI	TTTAAA	1 cut(s)	369
Eam1104I	CTCTTC	2 cut(s)	44, 113
EarI	CTCTTC	2 cut(s)	44, 113
Eco130I	CCWWGG	3 cut(s)	313, 429, 462
Eco47I	GGWCC	2 cut(s)	229, 317
Eco88I	CYCGRG	2 cut(s)	35, 488
EcoRI	GAATTC	2 cut(s)	8, 95
EcoRII	CCWGG	1 cut(s)	325
EcoT14I	CCWWGG	3 cut(s)	313, 429, 462
ErhI	CCWWGG	3 cut(s)	313, 429, 462
FaiI	YATR	1 cut(s)	381
FblI	GTMKAC	1 cut(s)	201
Fnu4HI	GCNGC	3 cut(s)	150, 468, 480
FokI	GGATG	5 cut(s)	18, 221, 283, 364, 446
Fsp4HI	GCNGC	3 cut(s)	150, 468, 480
GluI	GCNGC	3 cut(s)	150, 468, 480
GsaI	CCCAGC	1 cut(s)	422
HinfI	GANTC	2 cut(s)	28, 108
HphI	GGTGA	1 cut(s)	399
Hpy166II	GTNNAC	1 cut(s)	202
Hpy188III	TCNNGA	3 cut(s)	35, 178, 259
Hpy8I	GTNNAC	1 cut(s)	202
HpyAV	CCTTC	4 cut(s)	37, 211, 271, 414
HpyCH4V	TGCA	2 cut(s)	437, 470
HpyF10VI	GCNNNNNNNGC	5 cut(s)	331, 340, 409, 476, 500
HpyF3I	CTNAG	1 cut(s)	195
Kzo9I	GATC	1 cut(s)	126
LmnI	GCTCC	2 cut(s)	427, 460
LpnPI	CCDG	8 cut(s)	128, 142, 199, 264, 312, 339, 426, 432
Lsp1109I	GCAGC	2 cut(s)	136, 454
LweI	GCATC	1 cut(s)	424
MalI	GATC	1 cut(s)	128
MboI	GATC	1 cut(s)	126
MboII	GAAGA	6 cut(s)	61, 130, 136, 274, 277, 286
MfeI	CAATTG	1 cut(s)	222
MluCI	AATT	5 cut(s)	8, 78, 95, 222, 371
MseI	TTAA	3 cut(s)	21, 368, 399
MspCI	CTTAAG	1 cut(s)	398
MspR9I	CCNGG	1 cut(s)	327
MunI	CAATTG	1 cut(s)	222
MvaI	CCWGG	1 cut(s)	327
MwoI	GCNNNNNNNGC	5 cut(s)	331, 340, 409, 476, 500
NdeII	GATC	1 cut(s)	126
NlaIV	GGNNCC	1 cut(s)	249
PfeI	GAWTC	2 cut(s)	28, 108
PflMI	CCANNNNNTGG	1 cut(s)	326
PkrI	GCNGC	3 cut(s)	151, 469, 481
Psp6I	CCWGG	1 cut(s)	325
PspFI	CCCAGC	1 cut(s)	418
PspGI	CCWGG	1 cut(s)	325
PspN4I	GGNNCC	1 cut(s)	249
PspPI	GGNCC	2 cut(s)	229, 317
PstI	CTGCAG	1 cut(s)	472
RsaI	GTAC	1 cut(s)	448
RsaNI	GTAC	1 cut(s)	447
SaqAI	TTAA	3 cut(s)	21, 368, 399
SatI	GCNGC	3 cut(s)	150, 468, 480
Sau3AI	GATC	1 cut(s)	126
Sau96I	GGNCC	2 cut(s)	229, 317
ScaI	AGTACT	1 cut(s)	448
ScrFI	CCNGG	1 cut(s)	327
SfaNI	GCATC	1 cut(s)	424
SfcI	CTRYAG	2 cut(s)	468, 495
SinI	GGWCC	2 cut(s)	229, 317
SmlI	CTYRAG	1 cut(s)	398
SmoI	CTYRAG	1 cut(s)	398
Sse9I	AATT	5 cut(s)	8, 78, 95, 222, 371
SsiI	CCGC	3 cut(s)	227, 410, 479
StyD4I	CCNGG	1 cut(s)	325
StyI	CCWWGG	3 cut(s)	313, 429, 462
TaqI	TCGA	1 cut(s)	258
TasI	AATT	5 cut(s)	8, 78, 95, 222, 371
TatI	WGTACW	1 cut(s)	446
TauI	GCSGC	1 cut(s)	482
TfiI	GAWTC	2 cut(s)	28, 108
Tru1I	TTAA	3 cut(s)	21, 368, 399
Tru9I	TTAA	3 cut(s)	21, 368, 399
TseI	GCWGC	2 cut(s)	149, 467
TspDTI	ATGAA	3 cut(s)	20, 108, 178
TspGWI	ACGGA	1 cut(s)	299
Van91I	CCANNNNNTGG	1 cut(s)	326
Vha464I	CTTAAG	1 cut(s)	398
VpaK11BI	GGWCC	2 cut(s)	229, 317
XapI	RAATTY	2 cut(s)	8, 95
XmiI	GTMKAC	1 cut(s)	201
ZrmI	AGTACT	1 cut(s)	448

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.