Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0002423

Physical Location & Seq

Genomic Coordinates Forward (+)

16311903 .. 16313703

Gene Structure 1801 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g16850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 792 bp

ATGGTCTCGTTCACTCAGTCCGAAGACGGCTCAGTCCCGACACCGAGTCGCTCAAGGACTCCGCCACCGATTCCCCAATCTTCCACGGCTCCGCCGCAGGCGATGCTTTTGCCACTCAGCCTGCGTCGGAGGCCTTCTCTCCTCCGTCGATCTACGCCGAATCGAATGGACAGGGCTTTGATGGAGGTTTTGGCGGGTCCGATCGATCCGATTTTGCCGCCTCGGTCGGATATGCTGCCTGAGGAGGGCTTCGCACTCAGAGAATGGAAGAGTTATTGTAATCCGAACTTTTGTGACATTCAGGCAGAATGCAATTCAGCTCGAGGAGAAGGTAAGGCAGGAAAAGGAGCTGTTTTGGTTCAGATAATCGAGGAAGCAGATGAATTCAAGGCGGGATTCTACCAGAAGAGGACGATCGCTCCTGAAAATAACAAGGCTGCTAACAGGGAAAGGGAGAAGCTGTTCCTGGCTAACCAAGAGAAGTTTCATGCTGAGGTAGACAAGAACTACTGGAAGGAAATTGCGGACCTCATTCCCAATGCAAGAAATTTTAATCTTTTCAACTGGCCAAGGCTATTCGGAATACCTCCATGCATATTATTTTCTGACACATCTAACACTTGGAGAGAAGAAAGATTTTCCAAAGAAGGTGGGATTTCCCCGCTTAAATTGTTGTATCTTAAAAAAAGTACCCGAAGCTTGGACAAGGAACCAATTTCAATTGGAATTTTACCCATAAGATGGTTTCCAGCTATGCGAAGTATTTGGAGGTTAGAGCAAGGTGATATGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0006897 GO:0006898 GO:0008150 GO:0009504 GO:0009507 GO:0009524 GO:0009526 GO:0009536 GO:0009941 GO:0012506 GO:0016020 GO:0016192 GO:0030117 GO:0030118 GO:0030120 GO:0030125 GO:0030135 GO:0030136 GO:0030276 GO:0030659 GO:0030662 GO:0030665 GO:0031090 GO:0031410 GO:0031967 GO:0031975 GO:0031982 GO:0032050 GO:0032991 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048475 GO:0051179 GO:0051234 GO:0071944 GO:0072583 GO:0097708 GO:0098588 GO:0098657 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04142 ko04144 ko04721 ko04961 ko05016 ko05100 map04142 map04144 map04721 map04961 map05016 map05100

Pfam Domains

Protein Families

Clathrin_lg_ch

Protein Analysis

264

Amino Acids

29.99

Weight (kDa)

9.19

Isoelectric Point (pI)

57.36

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002423)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40060
fragaria_vesca	FvH4_4g08020 FvH4_7g24260
malus_domestica	MD00G1024200.v1.1 MD00G1047100.v1.1 MD00G1047900.v1.1 MD00G1048400.v1.1 MD00G1062700.v1.1 MD01G1132200.v1.1 MD01G1150700.v1.1 MD01G1152000.v1.1 MD05G1333900.v1.1 MD07G1216800.v1.1 MD07G1219900.v1.1
prunus_persica	Prupe.2G248500_v2.0.a1
pyrus_communis	pycom01g16830 pycom01g16850 pycom01g16880 pycom07g19900 pycom11g19450
rosa_chinensis	RchiOBHm_Chr1g0369851
rosa_laevigata	RLG00000027088 RLG00000027098
rosa_multiflora	Rmu_co8474619.1_g000001 Rmu_sc0008140.1_g000010
rosa_roxburghii	Rroxscaffold_3G00232620 Rroxscaffold_4G00286940 Rroxscaffold_4G00287110 Rroxscaffold_4G00322920
rosa_rugosa	Rorug01G0352700
rosa_samantha	Rh1AG194100 Rh1AG361200 Rh1BG178100 Rh1BG324900 Rh1CG179000 Rh1CG338100 Rh1DG087000 Rh1DG207800 Rh1DG355300
rosa_wichuraiana	Rw0G015470 Rw1G031810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	32
AccB7I	CCANNNNNTGG	1 cut(s)	741
AccI	GTMKAC	1 cut(s)	498
AciI	CCGC	8 cut(s)	62, 92, 95, 194, 218, 392, 524, 662
AclWI	GGATC	1 cut(s)	200
AcoI	YGGCCR	1 cut(s)	566
AcsI	RAATTY	3 cut(s)	383, 547, 726
AfaI	GTAC	1 cut(s)	691
AfiI	CCNNNNNNNGG	3 cut(s)	245, 700, 741
AgsI	TTSAA	3 cut(s)	388, 562, 720
AhdI	GACNNNNNGTC	1 cut(s)	45
AjnI	CCWGG	1 cut(s)	465
AjuI	GAANNNNNNNTTGG	2 cut(s)	468, 500
AloI	GAACNNNNNNTCC	2 cut(s)	446, 478
AluBI	AGCT	5 cut(s)	320, 350, 460, 699, 752
AluI	AGCT	5 cut(s)	320, 350, 460, 699, 752
Alw26I	GTCTC	1 cut(s)	10
AlwI	GGATC	1 cut(s)	200
Ama87I	CYCGRG	1 cut(s)	321
AoxI	GGCC	2 cut(s)	131, 566
ApeKI	GCWGC	2 cut(s)	235, 437
ApoI	RAATTY	3 cut(s)	383, 547, 726
Asp700I	GAANNNNTTC	1 cut(s)	461
AspS9I	GGNCC	2 cut(s)	197, 526
AvaI	CYCGRG	1 cut(s)	321
AvaII	GGWCC	2 cut(s)	197, 526
AxyI	CCTNAGG	1 cut(s)	240
BalI	TGGCCA	1 cut(s)	568
BbsI	GAAGAC	1 cut(s)	30
BbvCI	CCTCAGC	1 cut(s)	492
BbvI	GCAGC	2 cut(s)	222, 424
BccI	CCATC	2 cut(s)	175, 735
BceAI	ACGGC	2 cut(s)	43, 102
BcgI	CGANNNNNNTGC	2 cut(s)	91, 125
BciT130I	CCWGG	1 cut(s)	467
BcoDI	GTCTC	1 cut(s)	10
BisI	GCNGC	4 cut(s)	95, 218, 236, 438
BlsI	GCNGC	4 cut(s)	96, 219, 237, 439
Bme1390I	CCNGG	1 cut(s)	467
Bme18I	GGWCC	2 cut(s)	197, 526
BmeRI	GACNNNNNGTC	1 cut(s)	45
BmeT110I	CYCGRG	1 cut(s)	321
BmgT120I	GGNCC	2 cut(s)	197, 526
BmiI	GGNNCC	3 cut(s)	90, 198, 711
BmrFI	CCNGG	1 cut(s)	467
BmsI	GCATC	1 cut(s)	93
BpiI	GAAGAC	1 cut(s)	30
BplI	GAGNNNNNCTC	2 cut(s)	121, 153
Bpu10I	CCTNAGC	1 cut(s)	492
BpuEI	CTTGAG	1 cut(s)	37
Bsa29I	ATCGAT	1 cut(s)	204
BsaI	GGTCTC	1 cut(s)	10
BsaJI	CCNNGG	3 cut(s)	84, 221, 569
BsaXI	ACNNNNNCTCC	4 cut(s)	403, 433, 446, 476
Bsc4I	CCNNNNNNNGG	3 cut(s)	245, 700, 741
Bse1I	ACTGG	2 cut(s)	515, 569
Bse21I	CCTNAGG	1 cut(s)	240
BseBI	CCWGG	1 cut(s)	467
BseCI	ATCGAT	1 cut(s)	204
BseDI	CCNNGG	3 cut(s)	84, 221, 569
BseLI	CCNNNNNNNGG	3 cut(s)	245, 700, 741
BseMII	CTCAG	6 cut(s)	29, 45, 130, 231, 271, 483
BseNI	ACTGG	2 cut(s)	515, 569
BseRI	GAGGAG	3 cut(s)	131, 257, 339
BseXI	GCAGC	2 cut(s)	222, 424
Bsh1285I	CGRYCG	3 cut(s)	204, 227, 417
BshFI	GGCC	2 cut(s)	133, 568
BshVI	ATCGAT	1 cut(s)	204
BsiEI	CGRYCG	3 cut(s)	204, 227, 417
BsiHKCI	CYCGRG	1 cut(s)	321
BslFI	GGGAC	1 cut(s)	20
BslI	CCNNNNNNNGG	3 cut(s)	245, 700, 741
BsmAI	GTCTC	1 cut(s)	10
BsmFI	GGGAC	1 cut(s)	20
BsmI	GAATGC	1 cut(s)	314
BsnI	GGCC	2 cut(s)	133, 568
Bso31I	GGTCTC	1 cut(s)	10
BsoBI	CYCGRG	1 cut(s)	321
Bsp143I	GATC	4 cut(s)	149, 201, 205, 414
BspACI	CCGC	8 cut(s)	62, 92, 95, 194, 218, 392, 524, 662
BspANI	GGCC	2 cut(s)	133, 568
BspCNI	CTCAG	6 cut(s)	28, 44, 129, 232, 270, 484
BspDI	ATCGAT	1 cut(s)	204
BspLI	GGNNCC	3 cut(s)	90, 198, 711
BspPI	GGATC	1 cut(s)	200
BspTNI	GGTCTC	1 cut(s)	10
BsrI	ACTGG	2 cut(s)	515, 569
BssECI	CCNNGG	3 cut(s)	84, 221, 569
BssMI	GATC	4 cut(s)	149, 201, 205, 414
BssT1I	CCWWGG	1 cut(s)	569
Bst2UI	CCWGG	1 cut(s)	467
Bst6I	CTCTTC	2 cut(s)	263, 401
BstAPI	GCANNNNNTGC	1 cut(s)	103
BstC8I	GCNNGC	2 cut(s)	99, 122
BstDEI	CTNAG	6 cut(s)	15, 31, 116, 240, 257, 492
BstDSI	CCRYGG	1 cut(s)	84
BstKTI	GATC	4 cut(s)	152, 204, 208, 417
BstMAI	GTCTC	1 cut(s)	10
BstMBI	GATC	4 cut(s)	149, 201, 205, 414
BstMCI	CGRYCG	3 cut(s)	204, 227, 417
BstMWI	GCNNNNNNNGC	2 cut(s)	103, 130
BstNI	CCWGG	1 cut(s)	467
BstSCI	CCNGG	1 cut(s)	465
BstV1I	GCAGC	2 cut(s)	222, 424
BstV2I	GAAGAC	1 cut(s)	30
Bsu15I	ATCGAT	1 cut(s)	204
Bsu36I	CCTNAGG	1 cut(s)	240
BsuRI	GGCC	2 cut(s)	133, 568
BsuTUI	ATCGAT	1 cut(s)	204
BtgI	CCRYGG	1 cut(s)	84
BtgZI	GCGATG	1 cut(s)	116
Cac8I	GCNNGC	2 cut(s)	99, 122
Cfr13I	GGNCC	2 cut(s)	197, 526
ClaI	ATCGAT	1 cut(s)	204
CseI	GACGC	1 cut(s)	113
Csp6I	GTAC	1 cut(s)	690
CspCI	CAANNNNNGTGG	2 cut(s)	631, 666
CviAII	CATG	2 cut(s)	488, 591
CviQI	GTAC	1 cut(s)	690
DdeI	CTNAG	6 cut(s)	15, 31, 116, 240, 257, 492
DpnI	GATC	4 cut(s)	151, 203, 207, 416
DpnII	GATC	4 cut(s)	149, 201, 205, 414
DrdI	GACNNNNNNGTC	1 cut(s)	32
DriI	GACNNNNNGTC	1 cut(s)	45
DseDI	GACNNNNNNGTC	1 cut(s)	32
EaeI	YGGCCR	1 cut(s)	566
Eam1104I	CTCTTC	2 cut(s)	263, 401
Eam1105I	GACNNNNNGTC	1 cut(s)	45
EarI	CTCTTC	2 cut(s)	263, 401
EciI	GGCGGA	2 cut(s)	51, 81
Eco130I	CCWWGG	1 cut(s)	569
Eco147I	AGGCCT	1 cut(s)	133
Eco31I	GGTCTC	1 cut(s)	10
Eco47I	GGWCC	2 cut(s)	197, 526
Eco81I	CCTNAGG	1 cut(s)	240
Eco88I	CYCGRG	1 cut(s)	321
EcoRI	GAATTC	1 cut(s)	383
EcoRII	CCWGG	1 cut(s)	465
EcoT14I	CCWWGG	1 cut(s)	569
EcoT22I	ATGCAT	1 cut(s)	596
ErhI	CCWWGG	1 cut(s)	569
FaeI	CATG	2 cut(s)	491, 594
FaiI	YATR	7 cut(s)	233, 489, 592, 596, 737, 755, 788
FaqI	GGGAC	1 cut(s)	20
FatI	CATG	2 cut(s)	487, 590
FauI	CCCGC	3 cut(s)	187, 385, 669
FblI	GTMKAC	1 cut(s)	498
Fnu4HI	GCNGC	4 cut(s)	95, 218, 236, 438
Fsp4HI	GCNGC	4 cut(s)	95, 218, 236, 438
GluI	GCNGC	4 cut(s)	95, 218, 236, 438
HaeIII	GGCC	2 cut(s)	133, 568
HgaI	GACGC	1 cut(s)	113
Hin1II	CATG	2 cut(s)	491, 594
HindIII	AAGCTT	1 cut(s)	697
HinfI	GANTC	5 cut(s)	46, 58, 70, 160, 396
Hpy166II	GTNNAC	2 cut(s)	12, 499
Hpy188III	TCNNGA	2 cut(s)	37, 422
Hpy8I	GTNNAC	2 cut(s)	12, 499
Hpy99I	CGWCG	2 cut(s)	129, 150
HpyAV	CCTTC	4 cut(s)	144, 323, 508, 641
HpyCH4V	TGCA	3 cut(s)	312, 542, 594
HpyF10VI	GCNNNNNNNGC	2 cut(s)	103, 130
HpyF3I	CTNAG	6 cut(s)	15, 31, 116, 240, 257, 492
Hsp92II	CATG	2 cut(s)	491, 594
Kzo9I	GATC	4 cut(s)	149, 201, 205, 414
LmnI	GCTCC	3 cut(s)	94, 347, 424
Lsp1109I	GCAGC	2 cut(s)	222, 424
LweI	GCATC	1 cut(s)	93
MaeIII	GTNAC	1 cut(s)	293
MalI	GATC	4 cut(s)	151, 203, 207, 416
MboI	GATC	4 cut(s)	149, 201, 205, 414
MboII	GAAGA	5 cut(s)	35, 72, 280, 418, 641
MfeI	CAATTG	1 cut(s)	720
MlsI	TGGCCA	1 cut(s)	568
MluCI	AATT	8 cut(s)	313, 383, 519, 547, 668, 714, 720, 726
MluNI	TGGCCA	1 cut(s)	568
MlyI	GAGTC	2 cut(s)	52, 55
MmeI	TCCRAC	2 cut(s)	107, 207
Mox20I	TGGCCA	1 cut(s)	568
Mph1103I	ATGCAT	1 cut(s)	596
MroXI	GAANNNNTTC	1 cut(s)	461
MscI	TGGCCA	1 cut(s)	568
MseI	TTAA	3 cut(s)	552, 666, 681
Msp20I	TGGCCA	1 cut(s)	568
MspR9I	CCNGG	1 cut(s)	467
MunI	CAATTG	1 cut(s)	720
Mva1269I	GAATGC	1 cut(s)	314
MvaI	CCWGG	1 cut(s)	467
MwoI	GCNNNNNNNGC	2 cut(s)	103, 130
NdeII	GATC	4 cut(s)	149, 201, 205, 414
NlaIII	CATG	2 cut(s)	491, 594
NlaIV	GGNNCC	3 cut(s)	90, 198, 711
NmuCI	GTSAC	1 cut(s)	293
NsiI	ATGCAT	1 cut(s)	596
PaeR7I	CTCGAG	1 cut(s)	321
PceI	AGGCCT	1 cut(s)	133
PctI	GAATGC	1 cut(s)	314
PdmI	GAANNNNTTC	1 cut(s)	461
PfeI	GAWTC	3 cut(s)	70, 160, 396
PflMI	CCANNNNNTGG	1 cut(s)	741
PkrI	GCNGC	4 cut(s)	96, 219, 237, 439
Ple19I	CGATCG	2 cut(s)	204, 417
PleI	GAGTC	2 cut(s)	52, 54
PpsI	GAGTC	2 cut(s)	52, 54
Psp6I	CCWGG	1 cut(s)	465
PspGI	CCWGG	1 cut(s)	465
PspN4I	GGNNCC	3 cut(s)	90, 198, 711
PspPI	GGNCC	2 cut(s)	197, 526
PspXI	VCTCGAGB	1 cut(s)	321
PvuI	CGATCG	2 cut(s)	204, 417
RsaI	GTAC	1 cut(s)	691
RsaNI	GTAC	1 cut(s)	690
SaqAI	TTAA	3 cut(s)	552, 666, 681
SatI	GCNGC	4 cut(s)	95, 218, 236, 438
Sau3AI	GATC	4 cut(s)	149, 201, 205, 414
Sau96I	GGNCC	2 cut(s)	197, 526
SchI	GAGTC	2 cut(s)	52, 55
ScrFI	CCNGG	1 cut(s)	467
SfaNI	GCATC	1 cut(s)	93
Sfr274I	CTCGAG	1 cut(s)	321
SinI	GGWCC	2 cut(s)	197, 526
SlaI	CTCGAG	1 cut(s)	321
SmlI	CTYRAG	2 cut(s)	52, 321
SmoI	CTYRAG	2 cut(s)	52, 321
Sse9I	AATT	8 cut(s)	313, 383, 519, 547, 668, 714, 720, 726
SseBI	AGGCCT	1 cut(s)	133
SsiI	CCGC	8 cut(s)	62, 92, 95, 194, 218, 392, 524, 662
StuI	AGGCCT	1 cut(s)	133
StyD4I	CCNGG	1 cut(s)	465
StyI	CCWWGG	1 cut(s)	569
TaqI	TCGA	5 cut(s)	148, 163, 204, 322, 369
TaqII	GACCGA	1 cut(s)	213
TasI	AATT	8 cut(s)	313, 383, 519, 547, 668, 714, 720, 726
TauI	GCSGC	2 cut(s)	97, 220
TfiI	GAWTC	3 cut(s)	70, 160, 396
Tru1I	TTAA	3 cut(s)	552, 666, 681
Tru9I	TTAA	3 cut(s)	552, 666, 681
TseFI	GTSAC	1 cut(s)	293
TseI	GCWGC	2 cut(s)	235, 437
Tsp45I	GTSAC	1 cut(s)	293
TspDTI	ATGAA	2 cut(s)	396, 476
TspGWI	ACGGA	1 cut(s)	134
Van91I	CCANNNNNTGG	1 cut(s)	741
VpaK11BI	GGWCC	2 cut(s)	197, 526
XapI	RAATTY	3 cut(s)	383, 547, 726
XhoI	CTCGAG	1 cut(s)	321
XmiI	GTMKAC	1 cut(s)	498
XmnI	GAANNNNTTC	1 cut(s)	461
Zsp2I	ATGCAT	1 cut(s)	596

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.