Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr00

Orthogroup ID

OG0002423

Physical Location & Seq

Genomic Coordinates Forward (+)

3970215 .. 3974496

Gene Structure 4282 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD00G1024200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 561 bp

ATGCCCTTGGAAGGAAGTGGCAGTGCTCAACTATACAGGTTGATTTTAACCTACCACAGTCGGCCTATCATGATTCATAGAGCTGTTCTTGGGTCATTGAAGCGATTTTTTGGGGTCCTTAGAGAGCATTATGCCGGGGATTTTCCATTATGGCTTTCGCCAGTACAAGCTCATGTTTTACCAGTTACTGACTCTCAGGTTTGTAAAGCAGTTGCAAGTTTAATTTGTCAATTAACTCAAGAACCCTCAACACACCTGCACAACGGTTACCTGGGCTACGACCCCCAACTCTCCTCCCAGCGATTCGACTCCTTTGTCGACTCCGAGTCGCTCAAGGACTCCGCCACCGATTCCCCAATCTTCCACAGCTCTGCTGTAGACAACGCTTTCGCCACTCAGCCGGCATCGGAGGCCTTCTCTCCTCCGTTGATCTACGCTGAATCGAACGGCCGGGGCTTTGATGGAGGGTTTGGCGGGTCCGACGATCCGATTTTGCCGGCTCCATCAGAGATGCTGCCTGAGGAGGGCTTCGCTCTCAGAGAATGGAGGGGCCGCCGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0004812 GO:0004829 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0006082 GO:0006139 GO:0006399 GO:0006412 GO:0006418 GO:0006435 GO:0006518 GO:0006520 GO:0006725 GO:0006807 GO:0007275 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0010467 GO:0016070 GO:0016874 GO:0016875 GO:0019538 GO:0019752 GO:0022414 GO:0032501 GO:0032502 GO:0034641 GO:0034645 GO:0034660 GO:0043038 GO:0043039 GO:0043043 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0043603 GO:0043604 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044267 GO:0044271 GO:0044281 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046483 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0061458 GO:0071704 GO:0090304 GO:0140098 GO:0140101 GO:1901360 GO:1901564 GO:1901566 GO:1901576

KEGG Pathways

Metabolic & Signaling

ko00970 map00970

Pfam Domains

Protein Families

HGTP_anticodon tRNA-synt_2b tRNA_SAD

Protein Analysis

187

Amino Acids

20.42

Weight (kDa)

5.4

Isoelectric Point (pI)

66.53

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002423)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40060
fragaria_vesca	FvH4_4g08020 FvH4_7g24260
malus_domestica	MD00G1024200.v1.1 MD00G1047100.v1.1 MD00G1047900.v1.1 MD00G1048400.v1.1 MD00G1062700.v1.1 MD01G1132200.v1.1 MD01G1150700.v1.1 MD01G1152000.v1.1 MD05G1333900.v1.1 MD07G1216800.v1.1 MD07G1219900.v1.1
prunus_persica	Prupe.2G248500_v2.0.a1
pyrus_communis	pycom01g16830 pycom01g16850 pycom01g16880 pycom07g19900 pycom11g19450
rosa_chinensis	RchiOBHm_Chr1g0369851
rosa_laevigata	RLG00000027088 RLG00000027098
rosa_multiflora	Rmu_co8474619.1_g000001 Rmu_sc0008140.1_g000010
rosa_roxburghii	Rroxscaffold_3G00232620 Rroxscaffold_4G00286940 Rroxscaffold_4G00287110 Rroxscaffold_4G00322920
rosa_rugosa	Rorug01G0352700
rosa_samantha	Rh1AG194100 Rh1AG361200 Rh1BG178100 Rh1BG324900 Rh1CG179000 Rh1CG338100 Rh1DG087000 Rh1DG207800 Rh1DG355300
rosa_wichuraiana	Rw0G015470 Rw1G031810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	264
AasI	GACNNNNNNGTC	1 cut(s)	314
Acc36I	ACCTGC	1 cut(s)	264
AccI	GTMKAC	2 cut(s)	318, 378
AciI	CCGC	3 cut(s)	342, 474, 553
AclWI	GGATC	1 cut(s)	479
AcoI	YGGCCR	1 cut(s)	448
AfaI	GTAC	1 cut(s)	165
AfiI	CCNNNNNNNGG	2 cut(s)	11, 524
AgsI	TTSAA	1 cut(s)	100
AhdI	GACNNNNNGTC	1 cut(s)	325
AjnI	CCWGG	1 cut(s)	270
AluBI	AGCT	3 cut(s)	83, 170, 369
AluI	AGCT	3 cut(s)	83, 170, 369
Alw21I	GWGCWC	1 cut(s)	28
AlwI	GGATC	1 cut(s)	479
AlwNI	CAGNNNCTG	1 cut(s)	188
AoxI	GGCC	4 cut(s)	62, 411, 448, 550
ApeKI	GCWGC	1 cut(s)	514
ArsI	GACNNNNNNTTYG	2 cut(s)	371, 403
AspS9I	GGNCC	3 cut(s)	115, 477, 550
AsuC2I	CCSGG	2 cut(s)	136, 452
AvaII	GGWCC	2 cut(s)	115, 477
AxyI	CCTNAGG	1 cut(s)	519
Bbv12I	GWGCWC	1 cut(s)	28
BbvI	GCAGC	1 cut(s)	501
BccI	CCATC	2 cut(s)	455, 511
BceAI	ACGGC	2 cut(s)	463, 540
BciT130I	CCWGG	1 cut(s)	272
BcnI	CCSGG	2 cut(s)	136, 452
BfmI	CTRYAG	1 cut(s)	375
BfuAI	ACCTGC	1 cut(s)	264
BisI	GCNGC	2 cut(s)	515, 553
BlsI	GCNGC	2 cut(s)	516, 554
Bme1390I	CCNGG	3 cut(s)	136, 272, 452
Bme18I	GGWCC	2 cut(s)	115, 477
BmeRI	GACNNNNNGTC	1 cut(s)	325
BmgT120I	GGNCC	3 cut(s)	115, 477, 550
BmiI	GGNNCC	4 cut(s)	116, 478, 501, 551
BmrFI	CCNGG	3 cut(s)	136, 272, 452
BmsI	GCATC	2 cut(s)	413, 501
BplI	GAGNNNNNCTC	2 cut(s)	401, 433
BpuEI	CTTGAG	2 cut(s)	222, 317
BpuMI	CCSGG	2 cut(s)	136, 452
BsaJI	CCNNGG	4 cut(s)	6, 135, 271, 451
Bsc4I	CCNNNNNNNGG	2 cut(s)	11, 524
Bse118I	RCCGGY	2 cut(s)	400, 496
Bse1I	ACTGG	2 cut(s)	161, 182
Bse21I	CCTNAGG	1 cut(s)	519
BseBI	CCWGG	1 cut(s)	272
BseDI	CCNNGG	4 cut(s)	6, 135, 271, 451
BseLI	CCNNNNNNNGG	2 cut(s)	11, 524
BseMII	CTCAG	4 cut(s)	209, 410, 510, 550
BseNI	ACTGG	2 cut(s)	161, 182
BseRI	GAGGAG	3 cut(s)	283, 411, 536
BseX3I	CGGCCG	1 cut(s)	448
BseXI	GCAGC	1 cut(s)	501
BseYI	CCCAGC	1 cut(s)	297
BsgI	GTGCAG	1 cut(s)	242
Bsh1285I	CGRYCG	1 cut(s)	451
BshFI	GGCC	4 cut(s)	64, 413, 450, 552
BsiEI	CGRYCG	1 cut(s)	451
BsiHKAI	GWGCWC	1 cut(s)	28
BsiSI	CCGG	4 cut(s)	135, 401, 451, 497
BslI	CCNNNNNNNGG	2 cut(s)	11, 524
BsnI	GGCC	4 cut(s)	64, 413, 450, 552
Bsp1286I	GDGCHC	1 cut(s)	28
Bsp143I	GATC	2 cut(s)	429, 484
BspACI	CCGC	3 cut(s)	342, 474, 553
BspANI	GGCC	4 cut(s)	64, 413, 450, 552
BspCNI	CTCAG	4 cut(s)	208, 409, 511, 549
BspHI	TCATGA	1 cut(s)	69
BspLI	GGNNCC	4 cut(s)	116, 478, 501, 551
BspMI	ACCTGC	1 cut(s)	264
BspPI	GGATC	1 cut(s)	479
BsrFI	RCCGGY	2 cut(s)	400, 496
BsrI	ACTGG	2 cut(s)	161, 182
BssAI	RCCGGY	2 cut(s)	400, 496
BssECI	CCNNGG	4 cut(s)	6, 135, 271, 451
BssMI	GATC	2 cut(s)	429, 484
BssT1I	CCWWGG	1 cut(s)	6
Bst2UI	CCWGG	1 cut(s)	272
Bst4CI	ACNGT	2 cut(s)	59, 266
BstC8I	GCNNGC	2 cut(s)	402, 498
BstDEI	CTNAG	5 cut(s)	119, 195, 396, 519, 536
BstEII	GGTNACC	1 cut(s)	266
BstKTI	GATC	2 cut(s)	432, 487
BstMBI	GATC	2 cut(s)	429, 484
BstMCI	CGRYCG	1 cut(s)	451
BstMWI	GCNNNNNNNGC	1 cut(s)	410
BstNI	CCWGG	1 cut(s)	272
BstPI	GGTNACC	1 cut(s)	266
BstSCI	CCNGG	3 cut(s)	134, 270, 450
BstSFI	CTRYAG	1 cut(s)	375
BstV1I	GCAGC	1 cut(s)	501
BstZI	CGGCCG	1 cut(s)	448
Bsu36I	CCTNAGG	1 cut(s)	519
BsuRI	GGCC	4 cut(s)	64, 413, 450, 552
BtsI	GCAGTG	1 cut(s)	28
BtsIMutI	CAGTG	1 cut(s)	28
BveI	ACCTGC	1 cut(s)	264
Cac8I	GCNNGC	2 cut(s)	402, 498
CaiI	CAGNNNCTG	1 cut(s)	188
CciI	TCATGA	1 cut(s)	69
Cfr10I	RCCGGY	2 cut(s)	400, 496
Cfr13I	GGNCC	3 cut(s)	115, 477, 550
Csp6I	GTAC	1 cut(s)	164
CviAII	CATG	2 cut(s)	70, 173
CviQI	GTAC	1 cut(s)	164
DdeI	CTNAG	5 cut(s)	119, 195, 396, 519, 536
DpnI	GATC	2 cut(s)	431, 486
DpnII	GATC	2 cut(s)	429, 484
DrdI	GACNNNNNNGTC	1 cut(s)	314
DriI	GACNNNNNGTC	1 cut(s)	325
DseDI	GACNNNNNNGTC	1 cut(s)	314
EaeI	YGGCCR	1 cut(s)	448
EagI	CGGCCG	1 cut(s)	448
Eam1105I	GACNNNNNGTC	1 cut(s)	325
EciI	GGCGGA	1 cut(s)	331
EclXI	CGGCCG	1 cut(s)	448
Eco130I	CCWWGG	1 cut(s)	6
Eco147I	AGGCCT	1 cut(s)	413
Eco47I	GGWCC	2 cut(s)	115, 477
Eco52I	CGGCCG	1 cut(s)	448
Eco81I	CCTNAGG	1 cut(s)	519
Eco91I	GGTNACC	1 cut(s)	266
EcoO109I	RGGNCCY	1 cut(s)	115
EcoO65I	GGTNACC	1 cut(s)	266
EcoRII	CCWGG	1 cut(s)	270
EcoT14I	CCWWGG	1 cut(s)	6
ErhI	CCWWGG	1 cut(s)	6
FaeI	CATG	2 cut(s)	73, 176
FaiI	YATR	6 cut(s)	34, 71, 78, 132, 151, 174
FatI	CATG	2 cut(s)	69, 172
FauI	CCCGC	1 cut(s)	467
FblI	GTMKAC	2 cut(s)	318, 378
Fnu4HI	GCNGC	2 cut(s)	515, 553
Fsp4HI	GCNGC	2 cut(s)	515, 553
GluI	GCNGC	2 cut(s)	515, 553
GsaI	CCCAGC	1 cut(s)	301
HaeIII	GGCC	4 cut(s)	64, 413, 450, 552
HapII	CCGG	4 cut(s)	135, 401, 451, 497
Hin1II	CATG	2 cut(s)	73, 176
HincII	GTYRAC	1 cut(s)	319
HindII	GTYRAC	1 cut(s)	319
HinfI	GANTC	9 cut(s)	73, 191, 303, 308, 320, 326, 338, 350, 440
HpaII	CCGG	4 cut(s)	135, 401, 451, 497
Hpy166II	GTNNAC	2 cut(s)	319, 379
Hpy188I	TCNGA	6 cut(s)	325, 409, 481, 489, 508, 539
Hpy188III	TCNNGA	2 cut(s)	70, 239
Hpy8I	GTNNAC	2 cut(s)	319, 379
Hpy99I	CGWCG	1 cut(s)	485
HpyAV	CCTTC	2 cut(s)	5, 424
HpyCH4III	ACNGT	2 cut(s)	59, 266
HpyCH4V	TGCA	2 cut(s)	215, 259
HpyF10VI	GCNNNNNNNGC	1 cut(s)	410
HpyF3I	CTNAG	5 cut(s)	119, 195, 396, 519, 536
Hsp92II	CATG	2 cut(s)	73, 176
KroI	GCCGGC	2 cut(s)	400, 496
KroNI	GCCGGC	2 cut(s)	402, 498
Kzo9I	GATC	2 cut(s)	429, 484
LmnI	GCTCC	1 cut(s)	505
Lsp1109I	GCAGC	1 cut(s)	501
LweI	GCATC	2 cut(s)	413, 501
MaeIII	GTNAC	2 cut(s)	184, 266
MalI	GATC	2 cut(s)	431, 486
MboI	GATC	2 cut(s)	429, 484
MboII	GAAGA	1 cut(s)	352
MhlI	GDGCHC	1 cut(s)	28
MluCI	AATT	2 cut(s)	222, 230
MlyI	GAGTC	5 cut(s)	185, 302, 314, 332, 335
MmeI	TCCRAC	1 cut(s)	504
MnlI	CCTC	8 cut(s)	256, 304, 403, 432, 458, 514, 517, 540
MroNI	GCCGGC	2 cut(s)	400, 496
MseI	TTAA	3 cut(s)	47, 221, 233
MspI	CCGG	4 cut(s)	135, 401, 451, 497
MspR9I	CCNGG	3 cut(s)	136, 272, 452
MvaI	CCWGG	1 cut(s)	272
MwoI	GCNNNNNNNGC	1 cut(s)	410
NaeI	GCCGGC	2 cut(s)	402, 498
NciI	CCSGG	2 cut(s)	136, 452
NdeII	GATC	2 cut(s)	429, 484
NgoMIV	GCCGGC	2 cut(s)	400, 496
NlaIII	CATG	2 cut(s)	73, 176
NlaIV	GGNNCC	4 cut(s)	116, 478, 501, 551
PagI	TCATGA	1 cut(s)	69
PaqCI	CACCTGC	1 cut(s)	264
PceI	AGGCCT	1 cut(s)	413
PdiI	GCCGGC	2 cut(s)	402, 498
PfeI	GAWTC	4 cut(s)	73, 303, 350, 440
PkrI	GCNGC	2 cut(s)	516, 554
PleI	GAGTC	5 cut(s)	185, 302, 314, 332, 334
PpsI	GAGTC	5 cut(s)	185, 302, 314, 332, 334
PpuMI	RGGWCCY	1 cut(s)	115
Psp5II	RGGWCCY	1 cut(s)	115
Psp6I	CCWGG	1 cut(s)	270
PspEI	GGTNACC	1 cut(s)	266
PspFI	CCCAGC	1 cut(s)	297
PspGI	CCWGG	1 cut(s)	270
PspN4I	GGNNCC	4 cut(s)	116, 478, 501, 551
PspPI	GGNCC	3 cut(s)	115, 477, 550
PspPPI	RGGWCCY	1 cut(s)	115
PstNI	CAGNNNCTG	1 cut(s)	188
RsaI	GTAC	1 cut(s)	165
RsaNI	GTAC	1 cut(s)	164
SalI	GTCGAC	1 cut(s)	317
SaqAI	TTAA	3 cut(s)	47, 221, 233
SatI	GCNGC	2 cut(s)	515, 553
Sau3AI	GATC	2 cut(s)	429, 484
Sau96I	GGNCC	3 cut(s)	115, 477, 550
SchI	GAGTC	5 cut(s)	185, 302, 314, 332, 335
ScrFI	CCNGG	3 cut(s)	136, 272, 452
SduI	GDGCHC	1 cut(s)	28
SetI	ASST	8 cut(s)	41, 53, 85, 172, 201, 258, 273, 371
SfaNI	GCATC	2 cut(s)	413, 501
SfcI	CTRYAG	1 cut(s)	375
SinI	GGWCC	2 cut(s)	115, 477
SmlI	CTYRAG	2 cut(s)	237, 332
SmoI	CTYRAG	2 cut(s)	237, 332
Sse9I	AATT	2 cut(s)	222, 230
SseBI	AGGCCT	1 cut(s)	413
SsiI	CCGC	3 cut(s)	342, 474, 553
StuI	AGGCCT	1 cut(s)	413
StyD4I	CCNGG	3 cut(s)	134, 270, 450
StyI	CCWWGG	1 cut(s)	6
TaaI	ACNGT	2 cut(s)	59, 266
TaqI	TCGA	3 cut(s)	306, 318, 443
TasI	AATT	2 cut(s)	222, 230
TatI	WGTACW	1 cut(s)	163
TauI	GCSGC	1 cut(s)	555
TfiI	GAWTC	4 cut(s)	73, 303, 350, 440
Tru1I	TTAA	3 cut(s)	47, 221, 233
Tru9I	TTAA	3 cut(s)	47, 221, 233
TscAI	CASTG	1 cut(s)	28
TseI	GCWGC	1 cut(s)	514
TspDTI	ATGAA	1 cut(s)	65
TspGWI	ACGGA	1 cut(s)	414
TspRI	CASTG	1 cut(s)	28
VpaK11BI	GGWCC	2 cut(s)	115, 477
XmiI	GTMKAC	2 cut(s)	318, 378

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.