Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr1

Orthogroup ID

OG0002423

Physical Location & Seq

Genomic Coordinates Forward (+)

16298020 .. 16300042

Gene Structure 2023 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom01g16830.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGGCCTCGTTCACTCAGCCCGAAGACGACTCAGTCCCGACCACCGTGTCAACTCGCCTGTTCGATGACGACGGTTATCTGGGTTACGACCCCCGACTCCCCTCCCAGCGATTCGACTCCTTCGTCGACACCGAGTCGCTCAAGGACTCCGCTACCGATTCCCCAATCTTCCACGACTCCGCCGTAGGCGATGCTTTCGCCACTCAGCCTGAGTCGGAGGCCTTCTCTCCTCCGTCGATCTACGCCGAATCGAATGGACAGGGCTTTGATGGAGGTTTTGGCGGGTCCGACGATCCGATTTTGCCGCCTCCGTTGGAGATGCTGCCTGAGGAGGGCTTCGCTCTCAGAGAATGGAGGAGGCAGAATGCAATTCAGCTTGAGGAGAAGGAAAGGCGGGAAAAGGAGTTGTTGGTTCAGATAATCGAGGAAGCAGATGAATTCAAGGTGGGATTCTACCAGAAGAGGAAGATCACTACTGAAAATAACAAGGCTGCTAACAGGAAAAGGGAGAAGTTTCATGCTGAGGTAGACAAGAACTACTGGAAGGCAATTGCGGACCTCATTTCCAATGATGTGCCGGCTATAGAGAAGAAGAGAGGGAAGGAGGATCAGGAAAAGAAGCCGTCCATTCTCGTTGTCCAAGGACCAAAGCCCGGAAAGCCAACCAAGCTTTCAAGGATGAGGCAGATACTTTTAAAGTTGAAGCACAATACCCCTCCCCACCTTAAGCCTTCACAACCGGCCCTAGCTCCCGCCAAGGATGCAAAACCGAGTACTTCTGCTCCCCCCAAGGCAGCAATTGTCGCAGCTACCCCCCGAGGCTGTAGTTGCTTCTTCGTAATTTGCCTGGCGTTCTTTGTTAGGCTTATTTCGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0006897 GO:0006898 GO:0008150 GO:0009504 GO:0009507 GO:0009524 GO:0009526 GO:0009536 GO:0009941 GO:0012506 GO:0016020 GO:0016192 GO:0030117 GO:0030118 GO:0030120 GO:0030125 GO:0030135 GO:0030136 GO:0030276 GO:0030659 GO:0030662 GO:0030665 GO:0031090 GO:0031410 GO:0031967 GO:0031975 GO:0031982 GO:0032050 GO:0032991 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048475 GO:0051179 GO:0051234 GO:0071944 GO:0072583 GO:0097708 GO:0098588 GO:0098657 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04142 ko04144 ko04721 ko04961 ko05016 ko05100 map04142 map04144 map04721 map04961 map05016 map05100

Pfam Domains

Protein Families

Clathrin_lg_ch

Protein Analysis

292

Amino Acids

32.42

Weight (kDa)

5.94

Isoelectric Point (pI)

55.43

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002423)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40060
fragaria_vesca	FvH4_4g08020 FvH4_7g24260
malus_domestica	MD00G1024200.v1.1 MD00G1047100.v1.1 MD00G1047900.v1.1 MD00G1048400.v1.1 MD00G1062700.v1.1 MD01G1132200.v1.1 MD01G1150700.v1.1 MD01G1152000.v1.1 MD05G1333900.v1.1 MD07G1216800.v1.1 MD07G1219900.v1.1
prunus_persica	Prupe.2G248500_v2.0.a1
pyrus_communis	pycom01g16830 pycom01g16850 pycom01g16880 pycom07g19900 pycom11g19450
rosa_chinensis	RchiOBHm_Chr1g0369851
rosa_laevigata	RLG00000027088 RLG00000027098
rosa_multiflora	Rmu_co8474619.1_g000001 Rmu_sc0008140.1_g000010
rosa_roxburghii	Rroxscaffold_3G00232620 Rroxscaffold_4G00286940 Rroxscaffold_4G00287110 Rroxscaffold_4G00322920
rosa_rugosa	Rorug01G0352700
rosa_samantha	Rh1AG194100 Rh1AG361200 Rh1BG178100 Rh1BG324900 Rh1CG179000 Rh1CG338100 Rh1DG087000 Rh1DG207800 Rh1DG355300
rosa_wichuraiana	Rw0G015470 Rw1G031810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	3 cut(s)	32, 46, 122
AccI	GTMKAC	2 cut(s)	126, 528
AciI	CCGC	7 cut(s)	150, 180, 282, 305, 394, 554, 753
AclWI	GGATC	2 cut(s)	287, 615
AcsI	RAATTY	1 cut(s)	437
AfaI	GTAC	1 cut(s)	775
AfiI	CCNNNNNNNGG	2 cut(s)	332, 653
AflII	CTTAAG	1 cut(s)	725
AgsI	TTSAA	3 cut(s)	442, 675, 703
AhdI	GACNNNNNGTC	1 cut(s)	133
AjnI	CCWGG	1 cut(s)	846
AjuI	GAANNNNNNNTTGG	2 cut(s)	655, 687
AluBI	AGCT	4 cut(s)	376, 670, 749, 809
AluI	AGCT	4 cut(s)	376, 670, 749, 809
AlwI	GGATC	2 cut(s)	287, 615
Ama87I	CYCGRG	1 cut(s)	816
AoxI	GGCC	3 cut(s)	3, 219, 741
ApeKI	GCWGC	4 cut(s)	322, 491, 794, 806
ApoI	RAATTY	1 cut(s)	437
AspS9I	GGNCC	4 cut(s)	285, 556, 644, 742
AsuC2I	CCSGG	1 cut(s)	654
AvaI	CYCGRG	1 cut(s)	816
AvaII	GGWCC	3 cut(s)	285, 556, 644
AxyI	CCTNAGG	1 cut(s)	327
BbsI	GAAGAC	1 cut(s)	30
BbvCI	CCTCAGC	1 cut(s)	522
BbvI	GCAGC	4 cut(s)	309, 478, 806, 818
BccI	CCATC	1 cut(s)	263
BceAI	ACGGC	2 cut(s)	167, 607
BciT130I	CCWGG	1 cut(s)	848
BcnI	CCSGG	1 cut(s)	654
BfaI	CTAG	1 cut(s)	746
BfmI	CTRYAG	2 cut(s)	582, 823
BfrI	CTTAAG	1 cut(s)	725
BisI	GCNGC	5 cut(s)	305, 323, 492, 795, 807
BlsI	GCNGC	5 cut(s)	306, 324, 493, 796, 808
BmcAI	AGTACT	1 cut(s)	775
Bme1390I	CCNGG	2 cut(s)	654, 848
Bme18I	GGWCC	3 cut(s)	285, 556, 644
BmeRI	GACNNNNNGTC	1 cut(s)	133
BmeT110I	CYCGRG	1 cut(s)	816
BmgT120I	GGNCC	4 cut(s)	285, 556, 644, 742
BmiI	GGNNCC	1 cut(s)	286
BmrFI	CCNGG	2 cut(s)	654, 848
BmsI	GCATC	3 cut(s)	181, 309, 751
BpiI	GAAGAC	1 cut(s)	30
BplI	GAGNNNNNCTC	2 cut(s)	209, 241
Bpu10I	CCTNAGC	1 cut(s)	522
BpuEI	CTTGAG	2 cut(s)	125, 398
BpuMI	CCSGG	1 cut(s)	654
BsaJI	CCNNGG	4 cut(s)	640, 756, 789, 817
BsaXI	ACNNNNNCTCC	2 cut(s)	766, 796
Bsc4I	CCNNNNNNNGG	2 cut(s)	332, 653
Bse118I	RCCGGY	2 cut(s)	577, 739
Bse1I	ACTGG	1 cut(s)	545
Bse21I	CCTNAGG	1 cut(s)	327
BseBI	CCWGG	1 cut(s)	848
BseDI	CCNNGG	4 cut(s)	640, 756, 789, 817
BseGI	GGATG	2 cut(s)	684, 766
BseLI	CCNNNNNNNGG	2 cut(s)	332, 653
BseMII	CTCAG	7 cut(s)	29, 45, 201, 218, 318, 358, 513
BseNI	ACTGG	1 cut(s)	545
BseRI	GAGGAG	4 cut(s)	219, 344, 370, 395
BseXI	GCAGC	4 cut(s)	309, 478, 806, 818
BseYI	CCCAGC	1 cut(s)	105
BshFI	GGCC	3 cut(s)	5, 221, 743
BsiHKCI	CYCGRG	1 cut(s)	816
BsiSI	CCGG	3 cut(s)	578, 654, 740
BslFI	GGGAC	1 cut(s)	20
BslI	CCNNNNNNNGG	2 cut(s)	332, 653
BsmFI	GGGAC	1 cut(s)	20
BsmI	GAATGC	1 cut(s)	370
BsnI	GGCC	3 cut(s)	5, 221, 743
BsoBI	CYCGRG	1 cut(s)	816
Bsp143I	GATC	4 cut(s)	237, 292, 468, 607
BspACI	CCGC	7 cut(s)	150, 180, 282, 305, 394, 554, 753
BspANI	GGCC	3 cut(s)	5, 221, 743
BspCNI	CTCAG	7 cut(s)	28, 44, 202, 217, 319, 357, 514
BspLI	GGNNCC	1 cut(s)	286
BspPI	GGATC	2 cut(s)	287, 615
BspTI	CTTAAG	1 cut(s)	725
BsrFI	RCCGGY	2 cut(s)	577, 739
BsrI	ACTGG	1 cut(s)	545
BssAI	RCCGGY	2 cut(s)	577, 739
BssECI	CCNNGG	4 cut(s)	640, 756, 789, 817
BssMI	GATC	4 cut(s)	237, 292, 468, 607
BssT1I	CCWWGG	3 cut(s)	640, 756, 789
Bst2UI	CCWGG	1 cut(s)	848
Bst4CI	ACNGT	2 cut(s)	46, 74
Bst6I	CTCTTC	2 cut(s)	455, 587
BstAFI	CTTAAG	1 cut(s)	725
BstC8I	GCNNGC	1 cut(s)	579
BstDEI	CTNAG	7 cut(s)	15, 31, 204, 210, 327, 344, 522
BstF5I	GGATG	2 cut(s)	684, 766
BstKTI	GATC	4 cut(s)	240, 295, 471, 610
BstMBI	GATC	4 cut(s)	237, 292, 468, 607
BstMWI	GCNNNNNNNGC	5 cut(s)	658, 667, 761, 803, 828
BstNI	CCWGG	1 cut(s)	848
BstSCI	CCNGG	2 cut(s)	652, 846
BstSFI	CTRYAG	2 cut(s)	582, 823
BstV1I	GCAGC	4 cut(s)	309, 478, 806, 818
BstV2I	GAAGAC	1 cut(s)	30
Bsu36I	CCTNAGG	1 cut(s)	327
BsuRI	GGCC	3 cut(s)	5, 221, 743
BtgZI	GCGATG	1 cut(s)	204
BtsCI	GGATG	2 cut(s)	684, 766
Cac8I	GCNNGC	1 cut(s)	579
Cfr10I	RCCGGY	2 cut(s)	577, 739
Cfr13I	GGNCC	4 cut(s)	285, 556, 644, 742
Csp6I	GTAC	1 cut(s)	774
CviAII	CATG	1 cut(s)	518
CviQI	GTAC	1 cut(s)	774
DdeI	CTNAG	7 cut(s)	15, 31, 204, 210, 327, 344, 522
DpnI	GATC	4 cut(s)	239, 294, 470, 609
DpnII	GATC	4 cut(s)	237, 292, 468, 607
DraI	TTTAAA	1 cut(s)	696
DrdI	GACNNNNNNGTC	3 cut(s)	32, 46, 122
DriI	GACNNNNNGTC	1 cut(s)	133
DseDI	GACNNNNNNGTC	3 cut(s)	32, 46, 122
Eam1104I	CTCTTC	2 cut(s)	455, 587
Eam1105I	GACNNNNNGTC	1 cut(s)	133
EarI	CTCTTC	2 cut(s)	455, 587
EciI	GGCGGA	1 cut(s)	169
Eco130I	CCWWGG	3 cut(s)	640, 756, 789
Eco147I	AGGCCT	1 cut(s)	221
Eco47I	GGWCC	3 cut(s)	285, 556, 644
Eco81I	CCTNAGG	1 cut(s)	327
Eco88I	CYCGRG	1 cut(s)	816
EcoRI	GAATTC	1 cut(s)	437
EcoRII	CCWGG	1 cut(s)	846
EcoT14I	CCWWGG	3 cut(s)	640, 756, 789
ErhI	CCWWGG	3 cut(s)	640, 756, 789
FaeI	CATG	1 cut(s)	521
FaiI	YATR	2 cut(s)	519, 584
FaqI	GGGAC	1 cut(s)	20
FatI	CATG	1 cut(s)	517
FauI	CCCGC	3 cut(s)	275, 387, 760
FblI	GTMKAC	2 cut(s)	126, 528
Fnu4HI	GCNGC	5 cut(s)	305, 323, 492, 795, 807
FokI	GGATG	2 cut(s)	691, 773
Fsp4HI	GCNGC	5 cut(s)	305, 323, 492, 795, 807
FspBI	CTAG	1 cut(s)	746
GluI	GCNGC	5 cut(s)	305, 323, 492, 795, 807
GsaI	CCCAGC	1 cut(s)	109
HaeIII	GGCC	3 cut(s)	5, 221, 743
HapII	CCGG	3 cut(s)	578, 654, 740
Hin1II	CATG	1 cut(s)	521
HincII	GTYRAC	2 cut(s)	51, 127
HindII	GTYRAC	2 cut(s)	51, 127
HindIII	AAGCTT	1 cut(s)	668
HpaII	CCGG	3 cut(s)	578, 654, 740
Hpy166II	GTNNAC	4 cut(s)	12, 51, 127, 529
Hpy188I	TCNGA	5 cut(s)	217, 289, 297, 347, 417
Hpy188III	TCNNGA	2 cut(s)	37, 611
Hpy8I	GTNNAC	4 cut(s)	12, 51, 127, 529
Hpy99I	CGWCG	4 cut(s)	74, 128, 238, 293
HpyAV	CCTTC	6 cut(s)	130, 232, 379, 538, 595, 741
HpyCH4III	ACNGT	2 cut(s)	46, 74
HpyCH4V	TGCA	2 cut(s)	368, 764
HpyF10VI	GCNNNNNNNGC	5 cut(s)	658, 667, 761, 803, 828
HpyF3I	CTNAG	7 cut(s)	15, 31, 204, 210, 327, 344, 522
Hsp92II	CATG	1 cut(s)	521
KroI	GCCGGC	1 cut(s)	577
KroNI	GCCGGC	1 cut(s)	579
Kzo9I	GATC	4 cut(s)	237, 292, 468, 607
LmnI	GCTCC	2 cut(s)	754, 787
Lsp1109I	GCAGC	4 cut(s)	309, 478, 806, 818
LweI	GCATC	3 cut(s)	181, 309, 751
MaeI	CTAG	1 cut(s)	746
MaeIII	GTNAC	1 cut(s)	83
MalI	GATC	4 cut(s)	239, 294, 470, 609
MboI	GATC	4 cut(s)	237, 292, 468, 607
MboII	GAAGA	7 cut(s)	35, 160, 472, 478, 601, 604, 826
MfeI	CAATTG	2 cut(s)	549, 798
MluCI	AATT	5 cut(s)	369, 437, 549, 798, 840
MlyI	GAGTC	7 cut(s)	23, 90, 110, 140, 143, 170, 221
MmeI	TCCRAC	3 cut(s)	195, 294, 312
MroNI	GCCGGC	1 cut(s)	577
MseI	TTAA	2 cut(s)	695, 726
MspCI	CTTAAG	1 cut(s)	725
MspI	CCGG	3 cut(s)	578, 654, 740
MspR9I	CCNGG	2 cut(s)	654, 848
MunI	CAATTG	2 cut(s)	549, 798
Mva1269I	GAATGC	1 cut(s)	370
MvaI	CCWGG	1 cut(s)	848
MwoI	GCNNNNNNNGC	5 cut(s)	658, 667, 761, 803, 828
NaeI	GCCGGC	1 cut(s)	579
NciI	CCSGG	1 cut(s)	654
NdeII	GATC	4 cut(s)	237, 292, 468, 607
NgoMIV	GCCGGC	1 cut(s)	577
NlaIII	CATG	1 cut(s)	521
NlaIV	GGNNCC	1 cut(s)	286
PceI	AGGCCT	1 cut(s)	221
PcsI	WCGNNNNNNNCGW	3 cut(s)	120, 129, 180
PctI	GAATGC	1 cut(s)	370
PdiI	GCCGGC	1 cut(s)	579
PfeI	GAWTC	4 cut(s)	111, 158, 248, 450
PflFI	GACNNNGTC	1 cut(s)	32
PkrI	GCNGC	5 cut(s)	306, 324, 493, 796, 808
PleI	GAGTC	7 cut(s)	23, 90, 110, 140, 142, 170, 220
PpsI	GAGTC	7 cut(s)	23, 90, 110, 140, 142, 170, 220
Psp6I	CCWGG	1 cut(s)	846
PspFI	CCCAGC	1 cut(s)	105
PspGI	CCWGG	1 cut(s)	846
PspN4I	GGNNCC	1 cut(s)	286
PspPI	GGNCC	4 cut(s)	285, 556, 644, 742
PsyI	GACNNNGTC	1 cut(s)	32
RsaI	GTAC	1 cut(s)	775
RsaNI	GTAC	1 cut(s)	774
SalI	GTCGAC	1 cut(s)	125
SaqAI	TTAA	2 cut(s)	695, 726
SatI	GCNGC	5 cut(s)	305, 323, 492, 795, 807
Sau3AI	GATC	4 cut(s)	237, 292, 468, 607
Sau96I	GGNCC	4 cut(s)	285, 556, 644, 742
ScaI	AGTACT	1 cut(s)	775
SchI	GAGTC	7 cut(s)	23, 90, 110, 140, 143, 170, 221
ScrFI	CCNGG	2 cut(s)	654, 848
SetI	ASST	9 cut(s)	277, 378, 447, 528, 561, 672, 726, 751, 811
SfaNI	GCATC	3 cut(s)	181, 309, 751
SfcI	CTRYAG	2 cut(s)	582, 823
SinI	GGWCC	3 cut(s)	285, 556, 644
SmlI	CTYRAG	3 cut(s)	140, 377, 725
SmoI	CTYRAG	3 cut(s)	140, 377, 725
Sse9I	AATT	5 cut(s)	369, 437, 549, 798, 840
SseBI	AGGCCT	1 cut(s)	221
SsiI	CCGC	7 cut(s)	150, 180, 282, 305, 394, 554, 753
SspMI	CTAG	1 cut(s)	746
StuI	AGGCCT	1 cut(s)	221
StyD4I	CCNGG	2 cut(s)	652, 846
StyI	CCWWGG	3 cut(s)	640, 756, 789
TaaI	ACNGT	2 cut(s)	46, 74
TaqI	TCGA	6 cut(s)	63, 114, 126, 236, 251, 423
TasI	AATT	5 cut(s)	369, 437, 549, 798, 840
TatI	WGTACW	1 cut(s)	773
TauI	GCSGC	1 cut(s)	307
TfiI	GAWTC	4 cut(s)	111, 158, 248, 450
Tru1I	TTAA	2 cut(s)	695, 726
Tru9I	TTAA	2 cut(s)	695, 726
TseI	GCWGC	4 cut(s)	322, 491, 794, 806
TspDTI	ATGAA	2 cut(s)	450, 506
TspGWI	ACGGA	2 cut(s)	222, 300
Tth111I	GACNNNGTC	1 cut(s)	32
Vha464I	CTTAAG	1 cut(s)	725
VpaK11BI	GGWCC	3 cut(s)	285, 556, 644
XapI	RAATTY	1 cut(s)	437
XmiI	GTMKAC	2 cut(s)	126, 528
XspI	CTAG	1 cut(s)	746
ZrmI	AGTACT	1 cut(s)	775

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.