Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0008140.1

Orthogroup ID

OG0002423

Physical Location & Seq

Genomic Coordinates Reverse (-)

40100 .. 41724

Gene Structure 1625 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0008140.1_g000010.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

atgtttaggcagaatgcaattcagctcgcagagaaggagaagagcgaaaaggagcttttgagccaaatcatcggagaagctgaagatttcaaggttgaattttatcagaagaggaagatcacttctgagaataacaaagctactaacagggaaaaagagaagaaggcagttgaagatctcattcccaatgaggtgccagcaatagagaagaagagagggaagaaggatcaagaaaagaagccttccattgtcgttgtgcaaggtccaaaacctggtaagccaactgagctctcgaggatgaggcagatacttctaaaattgaggcataatacgcctcctcacctaaagccttcgccaccggcaccagccactacccctgaggctgtagttgtcactgtggcagctgcacccgaggctataactgctgtttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0006897 GO:0006898 GO:0008150 GO:0009504 GO:0009507 GO:0009524 GO:0009526 GO:0009536 GO:0009941 GO:0012506 GO:0016020 GO:0016192 GO:0030117 GO:0030118 GO:0030120 GO:0030125 GO:0030135 GO:0030136 GO:0030276 GO:0030659 GO:0030662 GO:0030665 GO:0031090 GO:0031410 GO:0031967 GO:0031975 GO:0031982 GO:0032050 GO:0032991 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048475 GO:0051179 GO:0051234 GO:0071944 GO:0072583 GO:0097708 GO:0098588 GO:0098657 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04142 ko04144 ko04721 ko04961 ko05016 ko05100 map04142 map04144 map04721 map04961 map05016 map05100

Pfam Domains

Protein Families

Clathrin_lg_ch

Protein Analysis

143

Amino Acids

15.98

Weight (kDa)

9.6

Isoelectric Point (pI)

47.11

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002423)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40060
fragaria_vesca	FvH4_4g08020 FvH4_7g24260
malus_domestica	MD00G1024200.v1.1 MD00G1047100.v1.1 MD00G1047900.v1.1 MD00G1048400.v1.1 MD00G1062700.v1.1 MD01G1132200.v1.1 MD01G1150700.v1.1 MD01G1152000.v1.1 MD05G1333900.v1.1 MD07G1216800.v1.1 MD07G1219900.v1.1
prunus_persica	Prupe.2G248500_v2.0.a1
pyrus_communis	pycom01g16830 pycom01g16850 pycom01g16880 pycom07g19900 pycom11g19450
rosa_chinensis	RchiOBHm_Chr1g0369851
rosa_laevigata	RLG00000027088 RLG00000027098
rosa_multiflora	Rmu_co8474619.1_g000001 Rmu_sc0008140.1_g000010
rosa_roxburghii	Rroxscaffold_3G00232620 Rroxscaffold_4G00286940 Rroxscaffold_4G00287110 Rroxscaffold_4G00322920
rosa_rugosa	Rorug01G0352700
rosa_samantha	Rh1AG194100 Rh1AG361200 Rh1BG178100 Rh1BG324900 Rh1CG179000 Rh1CG338100 Rh1DG087000 Rh1DG207800 Rh1DG355300
rosa_wichuraiana	Rw0G015470 Rw1G031810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	2 cut(s)	193, 361
AccB7I	CCANNNNNTGG	1 cut(s)	272
AclWI	GGATC	1 cut(s)	234
AcsI	RAATTY	1 cut(s)	98
AcuI	CTGAAG	1 cut(s)	102
AfiI	CCNNNNNNNGG	1 cut(s)	272
AgsI	TTSAA	3 cut(s)	91, 98, 173
AjnI	CCWGG	1 cut(s)	271
AluBI	AGCT	6 cut(s)	25, 55, 80, 140, 289, 404
AluI	AGCT	6 cut(s)	25, 55, 80, 140, 289, 404
Alw21I	GWGCWC	1 cut(s)	291
AlwI	GGATC	1 cut(s)	234
Ama87I	CYCGRG	2 cut(s)	292, 410
ApeKI	GCWGC	2 cut(s)	401, 404
ApoI	RAATTY	1 cut(s)	98
AspS9I	GGNCC	1 cut(s)	263
AsuHPI	GGTGA	1 cut(s)	332
AvaI	CYCGRG	2 cut(s)	292, 410
AvaII	GGWCC	1 cut(s)	263
AxyI	CCTNAGG	1 cut(s)	378
BanI	GGYRCC	2 cut(s)	193, 361
BanII	GRGCYC	1 cut(s)	291
Bbv12I	GWGCWC	1 cut(s)	291
BbvI	GCAGC	2 cut(s)	391, 413
BciT130I	CCWGG	1 cut(s)	273
BfmI	CTRYAG	1 cut(s)	384
BglII	AGATCT	1 cut(s)	175
BisI	GCNGC	2 cut(s)	402, 405
BlsI	GCNGC	2 cut(s)	403, 406
Bme1390I	CCNGG	1 cut(s)	273
Bme18I	GGWCC	1 cut(s)	263
BmeT110I	CYCGRG	2 cut(s)	292, 410
BmgT120I	GGNCC	1 cut(s)	263
BmiI	GGNNCC	2 cut(s)	195, 363
BmrFI	CCNGG	1 cut(s)	273
BsaJI	CCNNGG	1 cut(s)	411
Bsc4I	CCNNNNNNNGG	1 cut(s)	272
Bse118I	RCCGGY	1 cut(s)	358
Bse21I	CCTNAGG	1 cut(s)	378
BseBI	CCWGG	1 cut(s)	273
BseDI	CCNNGG	1 cut(s)	411
BseGI	GGATG	1 cut(s)	303
BseLI	CCNNNNNNNGG	1 cut(s)	272
BseMII	CTCAG	3 cut(s)	117, 276, 369
BseRI	GAGGAG	1 cut(s)	327
BseXI	GCAGC	2 cut(s)	391, 413
BsgI	GTGCAG	1 cut(s)	390
BshNI	GGYRCC	2 cut(s)	193, 361
BsiHKAI	GWGCWC	1 cut(s)	291
BsiHKCI	CYCGRG	2 cut(s)	292, 410
BsiSI	CCGG	1 cut(s)	359
BslI	CCNNNNNNNGG	1 cut(s)	272
BsmI	GAATGC	1 cut(s)	19
BsoBI	CYCGRG	2 cut(s)	292, 410
Bsp1286I	GDGCHC	1 cut(s)	291
Bsp143I	GATC	3 cut(s)	117, 175, 226
BspCNI	CTCAG	3 cut(s)	118, 277, 370
BspLI	GGNNCC	2 cut(s)	195, 363
BspPI	GGATC	1 cut(s)	234
BspQI	GCTCTTC	1 cut(s)	35
BspT107I	GGYRCC	2 cut(s)	193, 361
BsrFI	RCCGGY	1 cut(s)	358
BssAI	RCCGGY	1 cut(s)	358
BssECI	CCNNGG	1 cut(s)	411
BssMI	GATC	3 cut(s)	117, 175, 226
Bst2UI	CCWGG	1 cut(s)	273
Bst4CI	ACNGT	1 cut(s)	397
Bst6I	CTCTTC	3 cut(s)	35, 104, 206
BstC8I	GCNNGC	2 cut(s)	27, 198
BstDEI	CTNAG	3 cut(s)	126, 285, 378
BstF5I	GGATG	1 cut(s)	303
BstKTI	GATC	3 cut(s)	120, 178, 229
BstMBI	GATC	3 cut(s)	117, 175, 226
BstMWI	GCNNNNNNNGC	4 cut(s)	286, 331, 413, 422
BstNI	CCWGG	1 cut(s)	273
BstSCI	CCNGG	1 cut(s)	271
BstSFI	CTRYAG	1 cut(s)	384
BstV1I	GCAGC	2 cut(s)	391, 413
BstX2I	RGATCY	1 cut(s)	175
BstYI	RGATCY	1 cut(s)	175
Bsu36I	CCTNAGG	1 cut(s)	378
BtsCI	GGATG	1 cut(s)	303
BtsIMutI	CAGTG	1 cut(s)	393
Cac8I	GCNNGC	2 cut(s)	27, 198
Cfr10I	RCCGGY	1 cut(s)	358
Cfr13I	GGNCC	1 cut(s)	263
CsiI	ACCWGGT	1 cut(s)	271
DdeI	CTNAG	3 cut(s)	126, 285, 378
DpnI	GATC	3 cut(s)	119, 177, 228
DpnII	GATC	3 cut(s)	117, 175, 226
Eam1104I	CTCTTC	3 cut(s)	35, 104, 206
EarI	CTCTTC	3 cut(s)	35, 104, 206
Ecl136II	GAGCTC	1 cut(s)	289
Eco24I	GRGCYC	1 cut(s)	291
Eco47I	GGWCC	1 cut(s)	263
Eco53kI	GAGCTC	1 cut(s)	289
Eco57I	CTGAAG	1 cut(s)	102
Eco81I	CCTNAGG	1 cut(s)	378
Eco88I	CYCGRG	2 cut(s)	292, 410
EcoICRI	GAGCTC	1 cut(s)	289
EcoRII	CCWGG	1 cut(s)	271
EcoT38I	GRGCYC	1 cut(s)	291
FaiI	YATR	2 cut(s)	327, 419
Fnu4HI	GCNGC	2 cut(s)	402, 405
FokI	GGATG	1 cut(s)	310
FriOI	GRGCYC	1 cut(s)	291
Fsp4HI	GCNGC	2 cut(s)	402, 405
GluI	GCNGC	2 cut(s)	402, 405
HapII	CCGG	1 cut(s)	359
HpaII	CCGG	1 cut(s)	359
HphI	GGTGA	1 cut(s)	332
Hpy188I	TCNGA	3 cut(s)	74, 108, 127
Hpy188III	TCNNGA	2 cut(s)	230, 292
HpyAV	CCTTC	5 cut(s)	28, 157, 217, 252, 360
HpyCH4III	ACNGT	1 cut(s)	397
HpyCH4V	TGCA	3 cut(s)	17, 259, 407
HpyF10VI	GCNNNNNNNGC	4 cut(s)	286, 331, 413, 422
HpyF3I	CTNAG	3 cut(s)	126, 285, 378
Kzo9I	GATC	3 cut(s)	117, 175, 226
LguI	GCTCTTC	1 cut(s)	35
LmnI	GCTCC	1 cut(s)	52
LpnPI	CCDG	7 cut(s)	133, 210, 258, 285, 372, 378, 390
Lsp1109I	GCAGC	2 cut(s)	391, 413
MabI	ACCWGGT	1 cut(s)	271
MaeIII	GTNAC	1 cut(s)	391
MalI	GATC	3 cut(s)	119, 177, 228
MboI	GATC	3 cut(s)	117, 175, 226
MboII	GAAGA	9 cut(s)	52, 95, 121, 127, 172, 185, 220, 223, 232
MflI	RGATCY	1 cut(s)	175
MhlI	GDGCHC	1 cut(s)	291
MluCI	AATT	3 cut(s)	18, 98, 317
MspA1I	CMGCKG	1 cut(s)	404
MspI	CCGG	1 cut(s)	359
MspR9I	CCNGG	1 cut(s)	273
Mva1269I	GAATGC	1 cut(s)	19
MvaI	CCWGG	1 cut(s)	273
MwoI	GCNNNNNNNGC	4 cut(s)	286, 331, 413, 422
NdeII	GATC	3 cut(s)	117, 175, 226
NlaIV	GGNNCC	2 cut(s)	195, 363
NmuCI	GTSAC	1 cut(s)	391
PaeR7I	CTCGAG	1 cut(s)	292
PciSI	GCTCTTC	1 cut(s)	35
PctI	GAATGC	1 cut(s)	19
PflMI	CCANNNNNTGG	1 cut(s)	272
PkrI	GCNGC	2 cut(s)	403, 406
Psp124BI	GAGCTC	1 cut(s)	291
Psp6I	CCWGG	1 cut(s)	271
PspGI	CCWGG	1 cut(s)	271
PspN4I	GGNNCC	2 cut(s)	195, 363
PspPI	GGNCC	1 cut(s)	263
PsuI	RGATCY	1 cut(s)	175
PvuII	CAGCTG	1 cut(s)	404
SacI	GAGCTC	1 cut(s)	291
SapI	GCTCTTC	1 cut(s)	35
SatI	GCNGC	2 cut(s)	402, 405
Sau3AI	GATC	3 cut(s)	117, 175, 226
Sau96I	GGNCC	1 cut(s)	263
ScrFI	CCNGG	1 cut(s)	273
SduI	GDGCHC	1 cut(s)	291
SexAI	ACCWGGT	1 cut(s)	271
SfcI	CTRYAG	1 cut(s)	384
Sfr274I	CTCGAG	1 cut(s)	292
SinI	GGWCC	1 cut(s)	263
SlaI	CTCGAG	1 cut(s)	292
SmlI	CTYRAG	1 cut(s)	292
SmoI	CTYRAG	1 cut(s)	292
Sse9I	AATT	3 cut(s)	18, 98, 317
SstI	GAGCTC	1 cut(s)	291
StyD4I	CCNGG	1 cut(s)	271
TaaI	ACNGT	1 cut(s)	397
TaqI	TCGA	1 cut(s)	293
TasI	AATT	3 cut(s)	18, 98, 317
TscAI	CASTG	1 cut(s)	400
TseFI	GTSAC	1 cut(s)	391
TseI	GCWGC	2 cut(s)	401, 404
Tsp45I	GTSAC	1 cut(s)	391
TspRI	CASTG	1 cut(s)	400
Van91I	CCANNNNNTGG	1 cut(s)	272
VpaK11BI	GGWCC	1 cut(s)	263
XapI	RAATTY	1 cut(s)	98
XhoI	CTCGAG	1 cut(s)	292

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.