Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr07

Orthogroup ID

OG0002423

Physical Location & Seq

Genomic Coordinates Forward (+)

29757226 .. 29759264

Gene Structure 2039 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD07G1219900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 864 bp

ATGGCCTCGTTCACTCAGCCCAAAGACGACTCAGTCCCGGCCACCGTGTCAACTCGCCCGTTCGACGACGACGGCTACCTGGGCTACGACCCCCGACTCTCCTCCCAGCGATTCGACTCCTTCGTCGACTCCGAGTCGCTCAAGGATTCCGCCACCGATTCCCCAATCTTCCACGGCTCCGCCACAGACGACGCTTTCGCTACTCAGCCGGCGTCGGAGGCCTTCTCTCCTCCGTCGATCTACGCCGAATCGAACGGCCAGGGCTTTGATGGAGGGTTTGGCGGGTCCGACGATCCCATTTTGCCGCCTCCGTCGGAGATGCTGCCTGAGGAGGGCTTCGCTCTCAGAGAATGGAGGAGGCAGAATGCAATTCATCTCGAGGAGAAGGAGAAGAGAGAAAAGGAGTTGTTGGTTCAAATAATTGAGGAAGCAGATGAATTCAAGGTGGGATTCTACCAGAAGAGGAAGATCACTACTGAAAATAACAAGGCTGCGAACAGGGAAAGGGAGAAGCTGTTCCTGGCTAATCAAGAGAAGTTTCATGCTGAGGTAGACAAGAACTACTGGAAGGCAATTGCGGACCTCATCCCCAATGAGGTGCCAGCAATAGAGAAGAAGAGAGGGAAGAAGGATACGGAAAAGAAGCCATCCATTCTCGTTGTCCAAGGTCCAAAGCCTGGAAAGCCAACCGAGCTTTCAAGGATGAGGCAGGTACTTTTAAAATTGAAGCATAATACACCTCCCCACCTTAAGCCTTCACCTCCAGCCCCAGCTCCCACCAAGGATGCAAAACCGAGTACTTCTGCTCCCCCCAAGGCTGCAGTTGTGGCGGCTACCCCCGAGCCTGTAGTAGCTGCTTCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0006897 GO:0006898 GO:0008150 GO:0009504 GO:0009507 GO:0009524 GO:0009526 GO:0009536 GO:0009941 GO:0012506 GO:0016020 GO:0016192 GO:0030117 GO:0030118 GO:0030120 GO:0030125 GO:0030135 GO:0030136 GO:0030276 GO:0030659 GO:0030662 GO:0030665 GO:0031090 GO:0031410 GO:0031967 GO:0031975 GO:0031982 GO:0032050 GO:0032991 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048475 GO:0051179 GO:0051234 GO:0071944 GO:0072583 GO:0097708 GO:0098588 GO:0098657 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04142 ko04144 ko04721 ko04961 ko05016 ko05100 map04142 map04144 map04721 map04961 map05016 map05100

Pfam Domains

Protein Families

Clathrin_lg_ch

Protein Analysis

288

Amino Acids

31.63

Weight (kDa)

5.7

Isoelectric Point (pI)

57.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Clathrin_lg_ch	PF01086	108 - 220	6.2e-09	Clathrin light chain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002423)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40060
fragaria_vesca	FvH4_4g08020 FvH4_7g24260
malus_domestica	MD00G1024200.v1.1 MD00G1047100.v1.1 MD00G1047900.v1.1 MD00G1048400.v1.1 MD00G1062700.v1.1 MD01G1132200.v1.1 MD01G1150700.v1.1 MD01G1152000.v1.1 MD05G1333900.v1.1 MD07G1216800.v1.1 MD07G1219900.v1.1
prunus_persica	Prupe.2G248500_v2.0.a1
pyrus_communis	pycom01g16830 pycom01g16850 pycom01g16880 pycom07g19900 pycom11g19450
rosa_chinensis	RchiOBHm_Chr1g0369851
rosa_laevigata	RLG00000027088 RLG00000027098
rosa_multiflora	Rmu_co8474619.1_g000001 Rmu_sc0008140.1_g000010
rosa_roxburghii	Rroxscaffold_3G00232620 Rroxscaffold_4G00286940 Rroxscaffold_4G00287110 Rroxscaffold_4G00322920
rosa_rugosa	Rorug01G0352700
rosa_samantha	Rh1AG194100 Rh1AG361200 Rh1BG178100 Rh1BG324900 Rh1CG179000 Rh1CG338100 Rh1DG087000 Rh1DG207800 Rh1DG355300
rosa_wichuraiana	Rw0G015470 Rw1G031810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	2 cut(s)	32, 122
Acc36I	ACCTGC	1 cut(s)	700
AccB1I	GGYRCC	1 cut(s)	598
AccB7I	CCANNNNNTGG	1 cut(s)	677
AccI	GTMKAC	2 cut(s)	126, 552
AciI	CCGC	6 cut(s)	150, 180, 282, 305, 578, 830
AclWI	GGATC	1 cut(s)	287
AcoI	YGGCCR	2 cut(s)	39, 256
AcsI	RAATTY	1 cut(s)	437
AcyI	GRCGYC	1 cut(s)	212
AfaI	GTAC	2 cut(s)	714, 799
AfiI	CCNNNNNNNGG	3 cut(s)	332, 595, 677
AflII	CTTAAG	1 cut(s)	749
AgsI	TTSAA	4 cut(s)	416, 442, 699, 727
AhdI	GACNNNNNGTC	1 cut(s)	133
AjnI	CCWGG	4 cut(s)	78, 258, 519, 676
AjuI	GAANNNNNNNTTGG	2 cut(s)	679, 711
AloI	GAACNNNNNNTCC	2 cut(s)	500, 532
AluBI	AGCT	4 cut(s)	514, 694, 773, 854
AluI	AGCT	4 cut(s)	514, 694, 773, 854
AlwI	GGATC	1 cut(s)	287
Ama87I	CYCGRG	2 cut(s)	377, 839
AoxI	GGCC	4 cut(s)	3, 39, 219, 256
ApeKI	GCWGC	4 cut(s)	322, 491, 818, 854
ApoI	RAATTY	1 cut(s)	437
ArsI	GACNNNNNNTTYG	2 cut(s)	179, 211
Asp700I	GAANNNNTTC	1 cut(s)	515
AspS9I	GGNCC	3 cut(s)	285, 580, 668
AsuC2I	CCSGG	1 cut(s)	38
AsuHPI	GGTGA	1 cut(s)	750
AvaI	CYCGRG	2 cut(s)	377, 839
AvaII	GGWCC	3 cut(s)	285, 580, 668
AxyI	CCTNAGG	1 cut(s)	327
BanI	GGYRCC	1 cut(s)	598
BbvCI	CCTCAGC	1 cut(s)	546
BbvI	GCAGC	4 cut(s)	309, 478, 805, 841
BccI	CCATC	2 cut(s)	263, 655
BceAI	ACGGC	3 cut(s)	88, 190, 271
BciT130I	CCWGG	4 cut(s)	80, 260, 521, 678
BciVI	GTATCC	1 cut(s)	625
BcnI	CCSGG	1 cut(s)	38
BfmI	CTRYAG	2 cut(s)	819, 846
BfrI	CTTAAG	1 cut(s)	749
BfuAI	ACCTGC	1 cut(s)	700
BfuI	GTATCC	1 cut(s)	625
BisI	GCNGC	6 cut(s)	305, 323, 492, 819, 831, 855
BlsI	GCNGC	6 cut(s)	306, 324, 493, 820, 832, 856
BmcAI	AGTACT	1 cut(s)	799
Bme1390I	CCNGG	5 cut(s)	38, 80, 260, 521, 678
Bme18I	GGWCC	3 cut(s)	285, 580, 668
BmeRI	GACNNNNNGTC	1 cut(s)	133
BmeT110I	CYCGRG	2 cut(s)	377, 839
BmgT120I	GGNCC	3 cut(s)	285, 580, 668
BmiI	GGNNCC	3 cut(s)	178, 286, 600
BmrFI	CCNGG	5 cut(s)	38, 80, 260, 521, 678
BmsI	GCATC	2 cut(s)	309, 775
BplI	GAGNNNNNCTC	2 cut(s)	209, 241
BpmI	CTGGAG	1 cut(s)	747
Bpu10I	CCTNAGC	1 cut(s)	546
BpuEI	CTTGAG	1 cut(s)	125
BpuMI	CCSGG	1 cut(s)	38
BsaHI	GRCGYC	1 cut(s)	212
BsaJI	CCNNGG	6 cut(s)	79, 172, 259, 664, 780, 813
BsaXI	ACNNNNNCTCC	4 cut(s)	500, 530, 790, 820
Bsc4I	CCNNNNNNNGG	3 cut(s)	332, 595, 677
Bse118I	RCCGGY	1 cut(s)	208
Bse1I	ACTGG	1 cut(s)	569
Bse21I	CCTNAGG	1 cut(s)	327
BseBI	CCWGG	4 cut(s)	80, 260, 521, 678
BseDI	CCNNGG	6 cut(s)	79, 172, 259, 664, 780, 813
BseGI	GGATG	4 cut(s)	585, 647, 708, 790
BseLI	CCNNNNNNNGG	3 cut(s)	332, 595, 677
BseMII	CTCAG	6 cut(s)	29, 45, 218, 318, 358, 537
BseNI	ACTGG	1 cut(s)	569
BseRI	GAGGAG	5 cut(s)	91, 219, 344, 370, 395
BseXI	GCAGC	4 cut(s)	309, 478, 805, 841
BseYI	CCCAGC	2 cut(s)	105, 769
BshFI	GGCC	4 cut(s)	5, 41, 221, 258
BshNI	GGYRCC	1 cut(s)	598
BsiHKCI	CYCGRG	2 cut(s)	377, 839
BsiSI	CCGG	2 cut(s)	38, 209
BslFI	GGGAC	1 cut(s)	20
BslI	CCNNNNNNNGG	3 cut(s)	332, 595, 677
BsmFI	GGGAC	1 cut(s)	20
BsmI	GAATGC	1 cut(s)	370
BsnI	GGCC	4 cut(s)	5, 41, 221, 258
BsoBI	CYCGRG	2 cut(s)	377, 839
Bsp143I	GATC	3 cut(s)	237, 292, 468
BspACI	CCGC	6 cut(s)	150, 180, 282, 305, 578, 830
BspANI	GGCC	4 cut(s)	5, 41, 221, 258
BspCNI	CTCAG	6 cut(s)	28, 44, 217, 319, 357, 538
BspLI	GGNNCC	3 cut(s)	178, 286, 600
BspMAI	CTGCAG	1 cut(s)	823
BspMI	ACCTGC	1 cut(s)	700
BspPI	GGATC	1 cut(s)	287
BspT107I	GGYRCC	1 cut(s)	598
BspTI	CTTAAG	1 cut(s)	749
BsrFI	RCCGGY	1 cut(s)	208
BsrI	ACTGG	1 cut(s)	569
BssAI	RCCGGY	1 cut(s)	208
BssECI	CCNNGG	6 cut(s)	79, 172, 259, 664, 780, 813
BssMI	GATC	3 cut(s)	237, 292, 468
BssNI	GRCGYC	1 cut(s)	212
BssT1I	CCWWGG	3 cut(s)	664, 780, 813
Bst2UI	CCWGG	4 cut(s)	80, 260, 521, 678
Bst4CI	ACNGT	1 cut(s)	46
Bst6I	CTCTTC	3 cut(s)	386, 455, 611
BstACI	GRCGYC	1 cut(s)	212
BstAFI	CTTAAG	1 cut(s)	749
BstC8I	GCNNGC	2 cut(s)	210, 603
BstDEI	CTNAG	6 cut(s)	15, 31, 204, 327, 344, 546
BstDSI	CCRYGG	1 cut(s)	172
BstF5I	GGATG	4 cut(s)	585, 647, 708, 790
BstKTI	GATC	3 cut(s)	240, 295, 471
BstMBI	GATC	3 cut(s)	237, 292, 468
BstMWI	GCNNNNNNNGC	5 cut(s)	81, 218, 682, 691, 827
BstNI	CCWGG	4 cut(s)	80, 260, 521, 678
BstSCI	CCNGG	5 cut(s)	36, 78, 258, 519, 676
BstSFI	CTRYAG	2 cut(s)	819, 846
BstV1I	GCAGC	4 cut(s)	309, 478, 805, 841
Bsu36I	CCTNAGG	1 cut(s)	327
BsuI	GTATCC	1 cut(s)	625
BsuRI	GGCC	4 cut(s)	5, 41, 221, 258
BtgI	CCRYGG	1 cut(s)	172
BtsCI	GGATG	4 cut(s)	585, 647, 708, 790
BveI	ACCTGC	1 cut(s)	700
Cac8I	GCNNGC	2 cut(s)	210, 603
Cfr10I	RCCGGY	1 cut(s)	208
Cfr13I	GGNCC	3 cut(s)	285, 580, 668
CseI	GACGC	2 cut(s)	200, 201
Csp6I	GTAC	2 cut(s)	713, 798
CviAII	CATG	1 cut(s)	542
CviQI	GTAC	2 cut(s)	713, 798
DdeI	CTNAG	6 cut(s)	15, 31, 204, 327, 344, 546
DpnI	GATC	3 cut(s)	239, 294, 470
DpnII	GATC	3 cut(s)	237, 292, 468
DraI	TTTAAA	1 cut(s)	720
DrdI	GACNNNNNNGTC	2 cut(s)	32, 122
DriI	GACNNNNNGTC	1 cut(s)	133
DseDI	GACNNNNNNGTC	2 cut(s)	32, 122
EaeI	YGGCCR	2 cut(s)	39, 256
Eam1104I	CTCTTC	3 cut(s)	386, 455, 611
Eam1105I	GACNNNNNGTC	1 cut(s)	133
EarI	CTCTTC	3 cut(s)	386, 455, 611
EciI	GGCGGA	2 cut(s)	139, 169
Eco130I	CCWWGG	3 cut(s)	664, 780, 813
Eco147I	AGGCCT	1 cut(s)	221
Eco47I	GGWCC	3 cut(s)	285, 580, 668
Eco81I	CCTNAGG	1 cut(s)	327
Eco88I	CYCGRG	2 cut(s)	377, 839
EcoRI	GAATTC	1 cut(s)	437
EcoRII	CCWGG	4 cut(s)	78, 258, 519, 676
EcoT14I	CCWWGG	3 cut(s)	664, 780, 813
ErhI	CCWWGG	3 cut(s)	664, 780, 813
FaeI	CATG	1 cut(s)	545
FaiI	YATR	2 cut(s)	543, 732
FaqI	GGGAC	1 cut(s)	20
FatI	CATG	1 cut(s)	541
FauI	CCCGC	1 cut(s)	275
FblI	GTMKAC	2 cut(s)	126, 552
Fnu4HI	GCNGC	6 cut(s)	305, 323, 492, 819, 831, 855
FokI	GGATG	4 cut(s)	572, 634, 715, 797
Fsp4HI	GCNGC	6 cut(s)	305, 323, 492, 819, 831, 855
GluI	GCNGC	6 cut(s)	305, 323, 492, 819, 831, 855
GsaI	CCCAGC	2 cut(s)	109, 773
GsuI	CTGGAG	1 cut(s)	747
HaeIII	GGCC	4 cut(s)	5, 41, 221, 258
HapII	CCGG	2 cut(s)	38, 209
HgaI	GACGC	2 cut(s)	200, 201
Hin1I	GRCGYC	1 cut(s)	212
Hin1II	CATG	1 cut(s)	545
HincII	GTYRAC	2 cut(s)	51, 127
HindII	GTYRAC	2 cut(s)	51, 127
HpaII	CCGG	2 cut(s)	38, 209
HphI	GGTGA	1 cut(s)	750
Hpy166II	GTNNAC	4 cut(s)	12, 51, 127, 553
Hpy188I	TCNGA	5 cut(s)	133, 217, 289, 316, 347
Hpy188III	TCNNGA	2 cut(s)	377, 530
Hpy8I	GTNNAC	4 cut(s)	12, 51, 127, 553
Hpy99I	CGWCG	9 cut(s)	68, 71, 74, 128, 194, 217, 238, 293, 316
HpyAV	CCTTC	6 cut(s)	130, 232, 379, 562, 622, 765
HpyCH4III	ACNGT	1 cut(s)	46
HpyCH4V	TGCA	3 cut(s)	368, 788, 821
HpyF10VI	GCNNNNNNNGC	5 cut(s)	81, 218, 682, 691, 827
HpyF3I	CTNAG	6 cut(s)	15, 31, 204, 327, 344, 546
Hsp92I	GRCGYC	1 cut(s)	212
Hsp92II	CATG	1 cut(s)	545
KroI	GCCGGC	1 cut(s)	208
KroNI	GCCGGC	1 cut(s)	210
Kzo9I	GATC	3 cut(s)	237, 292, 468
LmnI	GCTCC	3 cut(s)	182, 778, 811
Lsp1109I	GCAGC	4 cut(s)	309, 478, 805, 841
LweI	GCATC	2 cut(s)	309, 775
MalI	GATC	3 cut(s)	239, 294, 470
MboI	GATC	3 cut(s)	237, 292, 468
MboII	GAAGA	7 cut(s)	160, 403, 472, 478, 625, 628, 637
MfeI	CAATTG	1 cut(s)	573
MluCI	AATT	5 cut(s)	369, 420, 437, 573, 722
MlyI	GAGTC	5 cut(s)	23, 90, 110, 122, 143
MmeI	TCCRAC	3 cut(s)	195, 294, 312
MroNI	GCCGGC	1 cut(s)	208
MroXI	GAANNNNTTC	1 cut(s)	515
MseI	TTAA	2 cut(s)	719, 750
MspCI	CTTAAG	1 cut(s)	749
MspI	CCGG	2 cut(s)	38, 209
MspR9I	CCNGG	5 cut(s)	38, 80, 260, 521, 678
MunI	CAATTG	1 cut(s)	573
Mva1269I	GAATGC	1 cut(s)	370
MvaI	CCWGG	4 cut(s)	80, 260, 521, 678
MwoI	GCNNNNNNNGC	5 cut(s)	81, 218, 682, 691, 827
NaeI	GCCGGC	1 cut(s)	210
NciI	CCSGG	1 cut(s)	38
NdeII	GATC	3 cut(s)	237, 292, 468
NgoMIV	GCCGGC	1 cut(s)	208
NlaIII	CATG	1 cut(s)	545
NlaIV	GGNNCC	3 cut(s)	178, 286, 600
PaeR7I	CTCGAG	1 cut(s)	377
PceI	AGGCCT	1 cut(s)	221
PcsI	WCGNNNNNNNCGW	2 cut(s)	120, 129
PctI	GAATGC	1 cut(s)	370
PdiI	GCCGGC	1 cut(s)	210
PdmI	GAANNNNTTC	1 cut(s)	515
PfeI	GAWTC	5 cut(s)	111, 146, 158, 248, 450
PflFI	GACNNNGTC	1 cut(s)	32
PflMI	CCANNNNNTGG	1 cut(s)	677
PkrI	GCNGC	6 cut(s)	306, 324, 493, 820, 832, 856
PleI	GAGTC	5 cut(s)	23, 90, 110, 122, 142
PpsI	GAGTC	5 cut(s)	23, 90, 110, 122, 142
Psp6I	CCWGG	4 cut(s)	78, 258, 519, 676
PspFI	CCCAGC	2 cut(s)	105, 769
PspGI	CCWGG	4 cut(s)	78, 258, 519, 676
PspN4I	GGNNCC	3 cut(s)	178, 286, 600
PspPI	GGNCC	3 cut(s)	285, 580, 668
PstI	CTGCAG	1 cut(s)	823
PsyI	GACNNNGTC	1 cut(s)	32
RsaI	GTAC	2 cut(s)	714, 799
RsaNI	GTAC	2 cut(s)	713, 798
SalI	GTCGAC	1 cut(s)	125
SaqAI	TTAA	2 cut(s)	719, 750
SatI	GCNGC	6 cut(s)	305, 323, 492, 819, 831, 855
Sau3AI	GATC	3 cut(s)	237, 292, 468
Sau96I	GGNCC	3 cut(s)	285, 580, 668
ScaI	AGTACT	1 cut(s)	799
SchI	GAGTC	5 cut(s)	23, 90, 110, 122, 143
ScrFI	CCNGG	5 cut(s)	38, 80, 260, 521, 678
SfaNI	GCATC	2 cut(s)	309, 775
SfcI	CTRYAG	2 cut(s)	819, 846
Sfr274I	CTCGAG	1 cut(s)	377
SinI	GGWCC	3 cut(s)	285, 580, 668
SlaI	CTCGAG	1 cut(s)	377
SmlI	CTYRAG	3 cut(s)	140, 377, 749
SmoI	CTYRAG	3 cut(s)	140, 377, 749
Sse9I	AATT	5 cut(s)	369, 420, 437, 573, 722
SseBI	AGGCCT	1 cut(s)	221
SsiI	CCGC	6 cut(s)	150, 180, 282, 305, 578, 830
StuI	AGGCCT	1 cut(s)	221
StyD4I	CCNGG	5 cut(s)	36, 78, 258, 519, 676
StyI	CCWWGG	3 cut(s)	664, 780, 813
TaaI	ACNGT	1 cut(s)	46
TaqI	TCGA	6 cut(s)	63, 114, 126, 236, 251, 378
TasI	AATT	5 cut(s)	369, 420, 437, 573, 722
TatI	WGTACW	1 cut(s)	797
TauI	GCSGC	2 cut(s)	307, 833
TfiI	GAWTC	5 cut(s)	111, 146, 158, 248, 450
Tru1I	TTAA	2 cut(s)	719, 750
Tru9I	TTAA	2 cut(s)	719, 750
TseI	GCWGC	4 cut(s)	322, 491, 818, 854
TspDTI	ATGAA	3 cut(s)	362, 450, 530
TspGWI	ACGGA	3 cut(s)	222, 300, 650
Tth111I	GACNNNGTC	1 cut(s)	32
Van91I	CCANNNNNTGG	1 cut(s)	677
Vha464I	CTTAAG	1 cut(s)	749
VpaK11BI	GGWCC	3 cut(s)	285, 580, 668
XapI	RAATTY	1 cut(s)	437
XcmI	CCANNNNNNNNNTGG	1 cut(s)	266
XhoI	CTCGAG	1 cut(s)	377
XmiI	GTMKAC	2 cut(s)	126, 552
XmnI	GAANNNNTTC	1 cut(s)	515
ZrmI	AGTACT	1 cut(s)	799

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.