Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Contig00712

Orthogroup ID

OG0002423

Physical Location & Seq

Genomic Coordinates Forward (+)

20668 .. 23095

Gene Structure 2428 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw0G015470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 726 bp

ATGTCCTCCTCCTCCTTCACTCTTCCCGATGACGACTCCGTCCCCACCACCGGATCAACCCGCCCCTTTGACGACGACGACGACTACCTCCGCTACGAGCATGACTCCGTCGTAGTGGACGACGTGTTCGCGACTGAGACAGAAGCTCCATCTCCGCCGTCGGTCTTCGCTGCCGGATCGGACAATCCGATTCTTCCGCCTCCGTCCGAGATGCTGCCGGAGGAGGGCTCCGCTCTCAGAGAATGGAGGAGGCAGAATGCAATTCAGCTTGCAGAGAAAGAGAAGAGAGAAAAGGAGTTATTGAGCCAAATCATCGAGGAAGCTGAAGATTTCAAGGTTGAATTCTACCAGAAGAGGAAGATCACTTCTGAGAATAACAAAGCTGCTAACAGGGAAAAAGAGAAGATGTTTGTTGCCAGTCAAGAGAAGTTTCATGCTGAGGTAGACCAGAACTACTGGAAGGCAGTTGCAGATCTCATTCCCAATGAGGTGCCAGCAATAGAGAAGAGAGGGAAGAAGGATCAAGAAAAGAAGCCTTCCATTGTCGTTGTGCAAGGTCCAAAACCTGGTAAGCCAACTGAGATCTCGAGGATGAGGCAGATACTTCTAAAATTGAAGCATAATACGCCTCCTCACCTAAAGCCTTCGCCACCGGCACCAGCCACTGCCCCTGACGCTGTAGTTGCCACTGCGGCAGCTGCGCCTGAGGCTATAGCTGCTGCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005198 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0006897 GO:0006898 GO:0008150 GO:0009504 GO:0009507 GO:0009524 GO:0009526 GO:0009536 GO:0009941 GO:0012506 GO:0016020 GO:0016192 GO:0030117 GO:0030118 GO:0030120 GO:0030125 GO:0030135 GO:0030136 GO:0030276 GO:0030659 GO:0030662 GO:0030665 GO:0031090 GO:0031410 GO:0031967 GO:0031975 GO:0031982 GO:0032050 GO:0032991 GO:0042802 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044425 GO:0044433 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048475 GO:0051179 GO:0051234 GO:0071944 GO:0072583 GO:0097708 GO:0098588 GO:0098657 GO:0098796 GO:0098805

KEGG Pathways

Metabolic & Signaling

ko04142 ko04144 ko04721 ko04961 ko05016 ko05100 map04142 map04144 map04721 map04961 map05016 map05100

Pfam Domains

Protein Families

Clathrin_lg_ch

Protein Analysis

241

Amino Acids

26.7

Weight (kDa)

5.06

Isoelectric Point (pI)

61.22

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Clathrin_lg_ch	PF01086	70 - 177	1.1e-09	Clathrin light chain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002423)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G40060
fragaria_vesca	FvH4_4g08020 FvH4_7g24260
malus_domestica	MD00G1024200.v1.1 MD00G1047100.v1.1 MD00G1047900.v1.1 MD00G1048400.v1.1 MD00G1062700.v1.1 MD01G1132200.v1.1 MD01G1150700.v1.1 MD01G1152000.v1.1 MD05G1333900.v1.1 MD07G1216800.v1.1 MD07G1219900.v1.1
prunus_persica	Prupe.2G248500_v2.0.a1
pyrus_communis	pycom01g16830 pycom01g16850 pycom01g16880 pycom07g19900 pycom11g19450
rosa_chinensis	RchiOBHm_Chr1g0369851
rosa_laevigata	RLG00000027088 RLG00000027098
rosa_multiflora	Rmu_co8474619.1_g000001 Rmu_sc0008140.1_g000010
rosa_roxburghii	Rroxscaffold_3G00232620 Rroxscaffold_4G00286940 Rroxscaffold_4G00287110 Rroxscaffold_4G00322920
rosa_rugosa	Rorug01G0352700
rosa_samantha	Rh1AG194100 Rh1AG361200 Rh1BG178100 Rh1BG324900 Rh1CG179000 Rh1CG338100 Rh1DG087000 Rh1DG207800 Rh1DG355300
rosa_wichuraiana	Rw0G015470 Rw1G031810

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	38
AccB1I	GGYRCC	2 cut(s)	490, 655
AccB7I	CCANNNNNTGG	1 cut(s)	566
AccBSI	CCGCTC	1 cut(s)	233
AccI	GTMKAC	1 cut(s)	444
AccII	CGCG	1 cut(s)	131
AciI	CCGC	6 cut(s)	61, 91, 155, 197, 231, 692
AclWI	GGATC	3 cut(s)	61, 184, 528
AcsI	RAATTY	1 cut(s)	341
AcuI	CTGAAG	1 cut(s)	345
AfiI	CCNNNNNNNGG	3 cut(s)	50, 224, 566
AflIII	ACRYGT	1 cut(s)	123
AgsI	TTSAA	3 cut(s)	334, 341, 616
AjiI	CACGTC	1 cut(s)	124
AjnI	CCWGG	1 cut(s)	565
AloI	GAACNNNNNNTCC	2 cut(s)	110, 142
AluBI	AGCT	6 cut(s)	146, 268, 323, 383, 698, 716
AluI	AGCT	6 cut(s)	146, 268, 323, 383, 698, 716
Alw26I	GTCTC	1 cut(s)	131
AlwI	GGATC	3 cut(s)	61, 184, 528
AlwNI	CAGNNNCTG	1 cut(s)	665
Ama87I	CYCGRG	1 cut(s)	586
ApeKI	GCWGC	7 cut(s)	170, 214, 383, 695, 698, 716, 719
ApoI	RAATTY	1 cut(s)	341
ArsI	GACNNNNNNTTYG	2 cut(s)	110, 142
AspLEI	GCGC	1 cut(s)	703
AspS9I	GGNCC	1 cut(s)	557
AsuHPI	GGTGA	1 cut(s)	626
AvaI	CYCGRG	1 cut(s)	586
AvaII	GGWCC	1 cut(s)	557
AxyI	CCTNAGG	1 cut(s)	705
BanI	GGYRCC	2 cut(s)	490, 655
BanII	GRGCYC	1 cut(s)	230
BbsI	GAAGAC	1 cut(s)	157
BbvCI	CCTCAGC	1 cut(s)	438
BbvI	GCAGC	7 cut(s)	157, 201, 370, 685, 703, 706, 707
BccI	CCATC	1 cut(s)	157
BceAI	ACGGC	1 cut(s)	142
BciT130I	CCWGG	1 cut(s)	567
BcoDI	GTCTC	1 cut(s)	131
BfmI	CTRYAG	2 cut(s)	678, 711
BglI	GCCNNNNNGGC	1 cut(s)	692
BglII	AGATCT	2 cut(s)	472, 582
BisI	GCNGC	8 cut(s)	171, 215, 384, 693, 696, 699, 717, 720
BlsI	GCNGC	8 cut(s)	172, 216, 385, 694, 697, 700, 718, 721
Bme1390I	CCNGG	1 cut(s)	567
Bme18I	GGWCC	1 cut(s)	557
BmeT110I	CYCGRG	1 cut(s)	586
BmgBI	CACGTC	1 cut(s)	124
BmgT120I	GGNCC	1 cut(s)	557
BmiI	GGNNCC	3 cut(s)	229, 492, 657
BmrFI	CCNGG	1 cut(s)	567
BmsI	GCATC	1 cut(s)	201
BpiI	GAAGAC	1 cut(s)	157
BplI	GAGNNNNNCTC	4 cut(s)	89, 121, 212, 244
Bpu10I	CCTNAGC	1 cut(s)	438
BsaWI	WCCGGW	1 cut(s)	50
BsaXI	ACNNNNNCTCC	2 cut(s)	130, 160
Bsc4I	CCNNNNNNNGG	3 cut(s)	50, 224, 566
Bse118I	RCCGGY	1 cut(s)	652
Bse1I	ACTGG	2 cut(s)	417, 461
Bse21I	CCTNAGG	1 cut(s)	705
BseBI	CCWGG	1 cut(s)	567
BseGI	GGATG	1 cut(s)	597
BseLI	CCNNNNNNNGG	3 cut(s)	50, 224, 566
BseMII	CTCAG	6 cut(s)	126, 250, 360, 429, 570, 696
BseNI	ACTGG	2 cut(s)	417, 461
BseRI	GAGGAG	3 cut(s)	236, 262, 621
BseXI	GCAGC	7 cut(s)	157, 201, 370, 685, 703, 706, 707
Bsh1236I	CGCG	1 cut(s)	131
BshNI	GGYRCC	2 cut(s)	490, 655
BsiHKCI	CYCGRG	1 cut(s)	586
BsiSI	CCGG	4 cut(s)	51, 174, 218, 653
BslFI	GGGAC	1 cut(s)	26
BslI	CCNNNNNNNGG	3 cut(s)	50, 224, 566
BsmAI	GTCTC	1 cut(s)	131
BsmFI	GGGAC	1 cut(s)	26
BsmI	GAATGC	1 cut(s)	262
BsoBI	CYCGRG	1 cut(s)	586
Bsp1286I	GDGCHC	1 cut(s)	230
Bsp143I	GATC	6 cut(s)	53, 176, 360, 472, 520, 582
Bsp68I	TCGCGA	1 cut(s)	131
BspACI	CCGC	6 cut(s)	61, 91, 155, 197, 231, 692
BspCNI	CTCAG	6 cut(s)	127, 249, 361, 430, 571, 697
BspFNI	CGCG	1 cut(s)	131
BspLI	GGNNCC	3 cut(s)	229, 492, 657
BspPI	GGATC	3 cut(s)	61, 184, 528
BspT107I	GGYRCC	2 cut(s)	490, 655
BsrBI	CCGCTC	1 cut(s)	233
BsrFI	RCCGGY	1 cut(s)	652
BsrI	ACTGG	2 cut(s)	417, 461
BssAI	RCCGGY	1 cut(s)	652
BssMI	GATC	6 cut(s)	53, 176, 360, 472, 520, 582
Bst2UI	CCWGG	1 cut(s)	567
Bst6I	CTCTTC	4 cut(s)	27, 278, 347, 500
BstC8I	GCNNGC	2 cut(s)	270, 495
BstDEI	CTNAG	6 cut(s)	135, 236, 369, 438, 579, 705
BstF5I	GGATG	1 cut(s)	597
BstFNI	CGCG	1 cut(s)	131
BstHHI	GCGC	1 cut(s)	703
BstKTI	GATC	6 cut(s)	56, 179, 363, 475, 523, 585
BstMAI	GTCTC	1 cut(s)	131
BstMBI	GATC	6 cut(s)	53, 176, 360, 472, 520, 582
BstMWI	GCNNNNNNNGC	7 cut(s)	625, 674, 683, 692, 698, 707, 716
BstNI	CCWGG	1 cut(s)	567
BstSCI	CCNGG	1 cut(s)	565
BstSFI	CTRYAG	2 cut(s)	678, 711
BstUI	CGCG	1 cut(s)	131
BstV1I	GCAGC	7 cut(s)	157, 201, 370, 685, 703, 706, 707
BstV2I	GAAGAC	1 cut(s)	157
BstX2I	RGATCY	2 cut(s)	472, 582
BstYI	RGATCY	2 cut(s)	472, 582
Bsu36I	CCTNAGG	1 cut(s)	705
BtrI	CACGTC	1 cut(s)	124
BtsCI	GGATG	1 cut(s)	597
BtsI	GCAGTG	2 cut(s)	663, 687
BtsIMutI	CAGTG	2 cut(s)	663, 687
BtuMI	TCGCGA	1 cut(s)	131
Cac8I	GCNNGC	2 cut(s)	270, 495
CaiI	CAGNNNCTG	1 cut(s)	665
CfoI	GCGC	1 cut(s)	703
Cfr10I	RCCGGY	1 cut(s)	652
Cfr13I	GGNCC	1 cut(s)	557
CseI	GACGC	1 cut(s)	683
CsiI	ACCWGGT	1 cut(s)	565
CviAII	CATG	2 cut(s)	101, 434
DdeI	CTNAG	6 cut(s)	135, 236, 369, 438, 579, 705
DpnI	GATC	6 cut(s)	55, 178, 362, 474, 522, 584
DpnII	GATC	6 cut(s)	53, 176, 360, 472, 520, 582
DrdI	GACNNNNNNGTC	1 cut(s)	38
DseDI	GACNNNNNNGTC	1 cut(s)	38
Eam1104I	CTCTTC	4 cut(s)	27, 278, 347, 500
EarI	CTCTTC	4 cut(s)	27, 278, 347, 500
EciI	GGCGGA	2 cut(s)	144, 186
Eco24I	GRGCYC	1 cut(s)	230
Eco47I	GGWCC	1 cut(s)	557
Eco57I	CTGAAG	1 cut(s)	345
Eco81I	CCTNAGG	1 cut(s)	705
Eco88I	CYCGRG	1 cut(s)	586
EcoRI	GAATTC	1 cut(s)	341
EcoRII	CCWGG	1 cut(s)	565
EcoT38I	GRGCYC	1 cut(s)	230
FaeI	CATG	2 cut(s)	104, 437
FaiI	YATR	4 cut(s)	102, 435, 621, 713
FaqI	GGGAC	1 cut(s)	26
FatI	CATG	2 cut(s)	100, 433
FauI	CCCGC	1 cut(s)	68
FblI	GTMKAC	1 cut(s)	444
Fnu4HI	GCNGC	8 cut(s)	171, 215, 384, 693, 696, 699, 717, 720
FokI	GGATG	1 cut(s)	604
FriOI	GRGCYC	1 cut(s)	230
Fsp4HI	GCNGC	8 cut(s)	171, 215, 384, 693, 696, 699, 717, 720
GlaI	GCGC	1 cut(s)	702
GluI	GCNGC	8 cut(s)	171, 215, 384, 693, 696, 699, 717, 720
HapII	CCGG	4 cut(s)	51, 174, 218, 653
HgaI	GACGC	1 cut(s)	683
HhaI	GCGC	1 cut(s)	703
Hin1II	CATG	2 cut(s)	104, 437
Hin6I	GCGC	1 cut(s)	701
HinP1I	GCGC	1 cut(s)	701
HinfI	GANTC	3 cut(s)	35, 104, 190
HpaII	CCGG	4 cut(s)	51, 174, 218, 653
HphI	GGTGA	1 cut(s)	626
Hpy166II	GTNNAC	2 cut(s)	118, 445
Hpy188I	TCNGA	5 cut(s)	181, 189, 208, 239, 370
Hpy188III	TCNNGA	5 cut(s)	26, 130, 422, 524, 586
Hpy8I	GTNNAC	2 cut(s)	118, 445
Hpy99I	CGWCG	6 cut(s)	77, 80, 83, 113, 125, 163
HpyAV	CCTTC	5 cut(s)	25, 454, 511, 546, 654
HpyCH4IV	ACGT	1 cut(s)	123
HpyCH4V	TGCA	4 cut(s)	260, 272, 470, 553
HpyF10VI	GCNNNNNNNGC	7 cut(s)	625, 674, 683, 692, 698, 707, 716
HpyF3I	CTNAG	6 cut(s)	135, 236, 369, 438, 579, 705
HpySE526I	ACGT	1 cut(s)	123
Hsp92II	CATG	2 cut(s)	104, 437
HspAI	GCGC	1 cut(s)	701
Kzo9I	GATC	6 cut(s)	53, 176, 360, 472, 520, 582
LmnI	GCTCC	2 cut(s)	151, 233
Lsp1109I	GCAGC	7 cut(s)	157, 201, 370, 685, 703, 706, 707
LweI	GCATC	1 cut(s)	201
MabI	ACCWGGT	1 cut(s)	565
MaeII	ACGT	1 cut(s)	123
MalI	GATC	6 cut(s)	55, 178, 362, 474, 522, 584
MbiI	CCGCTC	1 cut(s)	233
MboI	GATC	6 cut(s)	53, 176, 360, 472, 520, 582
MflI	RGATCY	2 cut(s)	472, 582
MhlI	GDGCHC	1 cut(s)	230
MluCI	AATT	3 cut(s)	261, 341, 611
MlyI	GAGTC	2 cut(s)	29, 98
MspA1I	CMGCKG	1 cut(s)	698
MspI	CCGG	4 cut(s)	51, 174, 218, 653
MspR9I	CCNGG	1 cut(s)	567
Mva1269I	GAATGC	1 cut(s)	262
MvaI	CCWGG	1 cut(s)	567
MvnI	CGCG	1 cut(s)	131
MwoI	GCNNNNNNNGC	7 cut(s)	625, 674, 683, 692, 698, 707, 716
NdeII	GATC	6 cut(s)	53, 176, 360, 472, 520, 582
NlaIII	CATG	2 cut(s)	104, 437
NlaIV	GGNNCC	3 cut(s)	229, 492, 657
NruI	TCGCGA	1 cut(s)	131
PaeR7I	CTCGAG	1 cut(s)	586
PcsI	WCGNNNNNNNCGW	3 cut(s)	78, 117, 185
PctI	GAATGC	1 cut(s)	262
PfeI	GAWTC	1 cut(s)	190
PflFI	GACNNNGTC	2 cut(s)	38, 107
PflMI	CCANNNNNTGG	1 cut(s)	566
PkrI	GCNGC	8 cut(s)	172, 216, 385, 694, 697, 700, 718, 721
PleI	GAGTC	2 cut(s)	29, 98
PpsI	GAGTC	2 cut(s)	29, 98
Psp6I	CCWGG	1 cut(s)	565
PspGI	CCWGG	1 cut(s)	565
PspN4I	GGNNCC	3 cut(s)	229, 492, 657
PspPI	GGNCC	1 cut(s)	557
PstNI	CAGNNNCTG	1 cut(s)	665
PsuI	RGATCY	2 cut(s)	472, 582
PsyI	GACNNNGTC	2 cut(s)	38, 107
PvuII	CAGCTG	1 cut(s)	698
RruI	TCGCGA	1 cut(s)	131
SatI	GCNGC	8 cut(s)	171, 215, 384, 693, 696, 699, 717, 720
Sau3AI	GATC	6 cut(s)	53, 176, 360, 472, 520, 582
Sau96I	GGNCC	1 cut(s)	557
SchI	GAGTC	2 cut(s)	29, 98
ScrFI	CCNGG	1 cut(s)	567
SduI	GDGCHC	1 cut(s)	230
SexAI	ACCWGGT	1 cut(s)	565
SfaNI	GCATC	1 cut(s)	201
SfcI	CTRYAG	2 cut(s)	678, 711
Sfr274I	CTCGAG	1 cut(s)	586
SinI	GGWCC	1 cut(s)	557
SlaI	CTCGAG	1 cut(s)	586
SmlI	CTYRAG	1 cut(s)	586
SmoI	CTYRAG	1 cut(s)	586
Sse9I	AATT	3 cut(s)	261, 341, 611
SsiI	CCGC	6 cut(s)	61, 91, 155, 197, 231, 692
StyD4I	CCNGG	1 cut(s)	565
TaiI	ACGT	1 cut(s)	126
TaqI	TCGA	2 cut(s)	315, 587
TaqII	GACCGA	1 cut(s)	151
TasI	AATT	3 cut(s)	261, 341, 611
TauI	GCSGC	1 cut(s)	695
TfiI	GAWTC	1 cut(s)	190
TscAI	CASTG	2 cut(s)	670, 694
TseI	GCWGC	7 cut(s)	170, 214, 383, 695, 698, 716, 719
TspDTI	ATGAA	1 cut(s)	422
TspGWI	ACGGA	3 cut(s)	28, 97, 192
TspRI	CASTG	2 cut(s)	670, 694
Tth111I	GACNNNGTC	2 cut(s)	38, 107
Van91I	CCANNNNNTGG	1 cut(s)	566
VpaK11BI	GGWCC	1 cut(s)	557
XapI	RAATTY	1 cut(s)	341
XhoI	CTCGAG	1 cut(s)	586
XmiI	GTMKAC	1 cut(s)	444

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.