Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb5

Orthogroup ID

OG0003320

Physical Location & Seq

Genomic Coordinates Forward (+)

4711611 .. 4712397

Gene Structure 787 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_5g08071.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 378 bp

ATGGCAATCCCTGCTGACCTGAAGAAACTGGATGAGTACTTACTTTCTAGGAGTTACATCACTGGGTATCAGGCTTCAAAGGATGATATCACTGTGCTCGCAGCTCTTGAAAAGACCCCATCCTCGCAATATGTGAATGTGCTGCGGTGGTACAAACATATTGAGGCACTTCTGAAGATTTCTGGTGTTTCCGGAGAAGGTTGTGGTGTCACTGTCAAAGGAGACGCCCCTGTCATAGCAGCTGGAACAAAGGCCCCAGCTGGTGAAGAGGAAGATGATGATGATGTGGATCTTTTCGGTGAAGAAACGGAAGAGGAGAAGAAGGCTGCTGAAGAACATGCAGCATCCATCAAGGCATCTGCAAAAAAGAAGGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF1_GNE

Protein Analysis

126

Amino Acids

13.43

Weight (kDa)

4.78

Isoelectric Point (pI)

47.34

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003320)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30230 AT1G30230 AT2G18110
fragaria_vesca	FvH4_5g08071 FvH4_5g08120 FvH4_7g00650 FvH4_7g00650
malus_domestica	MD02G1316000.v1.1 MD06G1013800.v1.1 MD07G1005900.v1.1
prunus_persica	Prupe.1G190100_v2.0.a1 Prupe.2G008700_v2.0.a1 Prupe.4G287700_v2.0.a1 Prupe.4G287700_v2.0.a1
pyrus_communis	pycom02g26470
rosa_chinensis	RchiOBHm_Chr1g0314841 RchiOBHm_Chr7g0190381 RchiOBHm_Chr7g0190391
rosa_laevigata	RLG00000004537 RLG00000030760
rosa_multiflora	Rmu_co8123596.1_g000001 Rmu_ssc0000038.1_g000001
rosa_roxburghii	Rroxscaffold_3G00264680 Rroxscaffold_4G00331840
rosa_rugosa	Rorug01G0002400 Rorug06G0504400
rosa_samantha	Rh1AG013200 Rh1BG004800 Rh1CG011700 Rh1DG006500 Rh7AG110100 Rh7BG112600 Rh7DG113100
rosa_wichuraiana	Rw1G000580 Rw1G000590 Rw7G009550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	230
AccIII	TCCGGA	1 cut(s)	191
AciI	CCGC	1 cut(s)	145
AclWI	GGATC	1 cut(s)	297
AcuI	CTGAAG	3 cut(s)	41, 194, 351
AcyI	GRCGYC	1 cut(s)	225
AfaI	GTAC	2 cut(s)	38, 152
AgsI	TTSAA	2 cut(s)	78, 110
AluBI	AGCT	3 cut(s)	104, 242, 260
AluI	AGCT	3 cut(s)	104, 242, 260
Alw21I	GWGCWC	1 cut(s)	99
Alw26I	GTCTC	1 cut(s)	216
AlwI	GGATC	1 cut(s)	297
Aor13HI	TCCGGA	1 cut(s)	191
AoxI	GGCC	1 cut(s)	252
ApeKI	GCWGC	5 cut(s)	101, 142, 239, 326, 341
AspS9I	GGNCC	1 cut(s)	253
AsuHPI	GGTGA	2 cut(s)	275, 311
Bbv12I	GWGCWC	1 cut(s)	99
BbvI	GCAGC	5 cut(s)	113, 129, 251, 313, 353
BccI	CCATC	2 cut(s)	127, 356
BcoDI	GTCTC	1 cut(s)	216
BfaI	CTAG	1 cut(s)	48
BisI	GCNGC	5 cut(s)	102, 143, 240, 327, 342
BlsI	GCNGC	5 cut(s)	103, 144, 241, 328, 343
BmcAI	AGTACT	1 cut(s)	38
BmgT120I	GGNCC	1 cut(s)	253
BmiI	GGNNCC	1 cut(s)	255
BmrI	ACTGGG	1 cut(s)	72
BmsI	GCATC	2 cut(s)	353, 365
BmuI	ACTGGG	1 cut(s)	72
BsaBI	GATNNNNATC	1 cut(s)	288
BsaHI	GRCGYC	1 cut(s)	225
BsaWI	WCCGGW	1 cut(s)	191
Bse1I	ACTGG	2 cut(s)	33, 67
Bse8I	GATNNNNATC	1 cut(s)	288
BseAI	TCCGGA	1 cut(s)	191
BseGI	GGATG	4 cut(s)	37, 88, 119, 344
BseJI	GATNNNNATC	1 cut(s)	288
BseNI	ACTGG	2 cut(s)	33, 67
BseRI	GAGGAG	1 cut(s)	329
BseXI	GCAGC	5 cut(s)	113, 129, 251, 313, 353
BseYI	CCCAGC	1 cut(s)	256
BshFI	GGCC	1 cut(s)	254
BsiHKAI	GWGCWC	1 cut(s)	99
BsiSI	CCGG	1 cut(s)	192
BsmAI	GTCTC	1 cut(s)	216
BsmBI	CGTCTC	1 cut(s)	216
BsnI	GGCC	1 cut(s)	254
Bsp1286I	GDGCHC	1 cut(s)	99
Bsp13I	TCCGGA	1 cut(s)	191
Bsp143I	GATC	1 cut(s)	289
BspACI	CCGC	1 cut(s)	145
BspANI	GGCC	1 cut(s)	254
BspEI	TCCGGA	1 cut(s)	191
BspLI	GGNNCC	1 cut(s)	255
BspPI	GGATC	1 cut(s)	297
BsrI	ACTGG	2 cut(s)	33, 67
BssMI	GATC	1 cut(s)	289
BssNI	GRCGYC	1 cut(s)	225
Bst4CI	ACNGT	2 cut(s)	94, 214
Bst6I	CTCTTC	2 cut(s)	261, 306
BstACI	GRCGYC	1 cut(s)	225
BstAPI	GCANNNNNTGC	1 cut(s)	11
BstC8I	GCNNGC	1 cut(s)	99
BstF5I	GGATG	4 cut(s)	37, 88, 119, 344
BstKTI	GATC	1 cut(s)	292
BstMAI	GTCTC	1 cut(s)	216
BstMBI	GATC	1 cut(s)	289
BstMWI	GCNNNNNNNGC	1 cut(s)	11
BstNSI	RCATGY	1 cut(s)	341
BstV1I	GCAGC	5 cut(s)	113, 129, 251, 313, 353
BstX2I	RGATCY	1 cut(s)	289
BstYI	RGATCY	1 cut(s)	289
BsuRI	GGCC	1 cut(s)	254
BtsCI	GGATG	4 cut(s)	37, 88, 119, 344
BtsIMutI	CAGTG	3 cut(s)	60, 90, 210
Cac8I	GCNNGC	1 cut(s)	99
Cfr13I	GGNCC	1 cut(s)	253
CseI	GACGC	1 cut(s)	233
Csp6I	GTAC	2 cut(s)	37, 151
CviAII	CATG	1 cut(s)	338
CviJI	RGCY	6 cut(s)	74, 104, 242, 254, 260, 326
CviKI_1	RGCY	6 cut(s)	74, 104, 242, 254, 260, 326
CviQI	GTAC	2 cut(s)	37, 151
DpnI	GATC	1 cut(s)	291
DpnII	GATC	1 cut(s)	289
DrdI	GACNNNNNNGTC	1 cut(s)	230
DseDI	GACNNNNNNGTC	1 cut(s)	230
Eam1104I	CTCTTC	2 cut(s)	261, 306
EarI	CTCTTC	2 cut(s)	261, 306
Eco32I	GATATC	1 cut(s)	88
Eco57I	CTGAAG	3 cut(s)	41, 194, 351
EcoO109I	RGGNCCY	1 cut(s)	253
EcoRV	GATATC	1 cut(s)	88
Esp3I	CGTCTC	1 cut(s)	216
FaeI	CATG	1 cut(s)	341
FaiI	YATR	4 cut(s)	132, 159, 236, 339
FatI	CATG	1 cut(s)	337
Fnu4HI	GCNGC	5 cut(s)	102, 143, 240, 327, 342
FokI	GGATG	4 cut(s)	44, 95, 106, 331
Fsp4HI	GCNGC	5 cut(s)	102, 143, 240, 327, 342
FspBI	CTAG	1 cut(s)	48
GluI	GCNGC	5 cut(s)	102, 143, 240, 327, 342
GsaI	CCCAGC	1 cut(s)	260
HaeIII	GGCC	1 cut(s)	254
HapII	CCGG	1 cut(s)	192
HgaI	GACGC	1 cut(s)	233
Hin1I	GRCGYC	1 cut(s)	225
Hin1II	CATG	1 cut(s)	341
HpaII	CCGG	1 cut(s)	192
HphI	GGTGA	2 cut(s)	275, 311
Hpy188I	TCNGA	1 cut(s)	174
Hpy188III	TCNNGA	2 cut(s)	107, 192
HpyAV	CCTTC	3 cut(s)	191, 316, 364
HpyCH4III	ACNGT	2 cut(s)	94, 214
HpyCH4V	TGCA	2 cut(s)	341, 362
HpyF10VI	GCNNNNNNNGC	1 cut(s)	11
Hsp92I	GRCGYC	1 cut(s)	225
Hsp92II	CATG	1 cut(s)	341
Kpn2I	TCCGGA	1 cut(s)	191
Kzo9I	GATC	1 cut(s)	289
Lsp1109I	GCAGC	5 cut(s)	113, 129, 251, 313, 353
LweI	GCATC	2 cut(s)	353, 365
MaeI	CTAG	1 cut(s)	48
MaeIII	GTNAC	2 cut(s)	53, 208
MalI	GATC	1 cut(s)	291
MboI	GATC	1 cut(s)	289
MboII	GAAGA	8 cut(s)	34, 187, 278, 284, 314, 323, 331, 344
MflI	RGATCY	1 cut(s)	289
MhlI	GDGCHC	1 cut(s)	99
MnlI	CCTC	4 cut(s)	133, 157, 262, 307
MroI	TCCGGA	1 cut(s)	191
MspA1I	CMGCKG	2 cut(s)	242, 260
MspI	CCGG	1 cut(s)	192
MwoI	GCNNNNNNNGC	1 cut(s)	11
NdeII	GATC	1 cut(s)	289
NlaIII	CATG	1 cut(s)	341
NlaIV	GGNNCC	1 cut(s)	255
NmuCI	GTSAC	1 cut(s)	208
NspI	RCATGY	1 cut(s)	341
PkrI	GCNGC	5 cut(s)	103, 144, 241, 328, 343
PspFI	CCCAGC	1 cut(s)	256
PspN4I	GGNNCC	1 cut(s)	255
PspPI	GGNCC	1 cut(s)	253
PsuI	RGATCY	1 cut(s)	289
PvuII	CAGCTG	2 cut(s)	242, 260
RsaI	GTAC	2 cut(s)	38, 152
RsaNI	GTAC	2 cut(s)	37, 151
SatI	GCNGC	5 cut(s)	102, 143, 240, 327, 342
Sau3AI	GATC	1 cut(s)	289
Sau96I	GGNCC	1 cut(s)	253
ScaI	AGTACT	1 cut(s)	38
SduI	GDGCHC	1 cut(s)	99
SetI	ASST	6 cut(s)	21, 106, 202, 244, 262, 375
SfaNI	GCATC	2 cut(s)	353, 365
SsiI	CCGC	1 cut(s)	145
SspMI	CTAG	1 cut(s)	48
TaaI	ACNGT	2 cut(s)	94, 214
TatI	WGTACW	1 cut(s)	36
TscAI	CASTG	3 cut(s)	67, 97, 217
TseFI	GTSAC	1 cut(s)	208
TseI	GCWGC	5 cut(s)	101, 142, 239, 326, 341
Tsp45I	GTSAC	1 cut(s)	208
TspGWI	ACGGA	1 cut(s)	323
TspRI	CASTG	3 cut(s)	67, 97, 217
XceI	RCATGY	1 cut(s)	341
XspI	CTAG	1 cut(s)	48
ZrmI	AGTACT	1 cut(s)	38

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.