Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0003320

Physical Location & Seq

Genomic Coordinates Forward (+)

25203142 .. 25205886

Gene Structure 2745 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G287700.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 711 bp

ATGGCAGTCACATTCCATGACATCAACTCGGCTGTTGGCCTGAAGAAATTGGATGACTACTTGCTTGCCCGCAGTTACATCACTGGCTACGAAGCTTCAAAGGATGATCTCATTGTCCATGCAGCTCTTTCAAAGCCTCCATCATCAGAATTTGTGAACGTGTCTCGGTGGTACAACCATATCACTGCACTTCTTAGGATTTCTGGTGTTTCTGGACAAGGCTCTGGTGTCATTGTTGAGGGATCTGCTCCCATCACAGAGGAAGCAGTTGCTACACCTCCTGTGGCTGATACAAAGGCCTCAGCTGCTGAAGACGATGATGATGATGTGGATCTGTTTGGTGAAGAGACTGAAGAAGAGAAGAAGGCTGCTGAAGAGCGTGCAGCTTCCATCAAGGCATCTACAAAAAAGAAAGAATCTGGAAAGTCGTCAGTCCTGTTGGATGTGAAGCCATGGGATGATGAAACTGACATGAAAAAGCTTGAGGAGGCAGTAAGAAGTGTTCACATTGAAGGCTTGCATTGGGGAGCATCCAAACTTGTAGCTGTTGGGTATGGAATAAAGAAGTTGCAAATAATGCTAACAATTGTTGATGACCTGGTCTCTGTCGACACTCTTATTGAGGAACAACTTACTGTTGAACCAATTAATGAGTATGTCCAGAGCTGTGACATTGTAGCATTCAACAAAATATGTAATGTTCTAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF1_GNE

Protein Analysis

237

Amino Acids

25.64

Weight (kDa)

4.62

Isoelectric Point (pI)

40.23

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003320)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30230 AT1G30230 AT2G18110
fragaria_vesca	FvH4_5g08071 FvH4_5g08120 FvH4_7g00650 FvH4_7g00650
malus_domestica	MD02G1316000.v1.1 MD06G1013800.v1.1 MD07G1005900.v1.1
prunus_persica	Prupe.1G190100_v2.0.a1 Prupe.2G008700_v2.0.a1 Prupe.4G287700_v2.0.a1 Prupe.4G287700_v2.0.a1
pyrus_communis	pycom02g26470
rosa_chinensis	RchiOBHm_Chr1g0314841 RchiOBHm_Chr7g0190381 RchiOBHm_Chr7g0190391
rosa_laevigata	RLG00000004537 RLG00000030760
rosa_multiflora	Rmu_co8123596.1_g000001 Rmu_ssc0000038.1_g000001
rosa_roxburghii	Rroxscaffold_3G00264680 Rroxscaffold_4G00331840
rosa_rugosa	Rorug01G0002400 Rorug06G0504400
rosa_samantha	Rh1AG013200 Rh1BG004800 Rh1CG011700 Rh1DG006500 Rh7AG110100 Rh7BG112600 Rh7DG113100
rosa_wichuraiana	Rw1G000580 Rw1G000590 Rw7G009550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	609
AciI	CCGC	1 cut(s)	70
AclWI	GGATC	2 cut(s)	250, 339
AcsI	RAATTY	1 cut(s)	149
AcuI	CTGAAG	4 cut(s)	62, 330, 372, 393
AfaI	GTAC	1 cut(s)	173
AflIII	ACRYGT	1 cut(s)	159
AgsI	TTSAA	5 cut(s)	99, 132, 512, 641, 685
AjnI	CCWGG	1 cut(s)	597
AluBI	AGCT	7 cut(s)	95, 125, 305, 386, 481, 545, 666
AluI	AGCT	7 cut(s)	95, 125, 305, 386, 481, 545, 666
Alw26I	GTCTC	3 cut(s)	168, 341, 607
AlwI	GGATC	2 cut(s)	250, 339
AlwNI	CAGNNNCTG	1 cut(s)	308
AoxI	GGCC	2 cut(s)	37, 297
ApeKI	GCWGC	4 cut(s)	122, 305, 368, 383
ApoI	RAATTY	1 cut(s)	149
AseI	ATTAAT	1 cut(s)	648
AsuHPI	GGTGA	1 cut(s)	353
BbsI	GAAGAC	1 cut(s)	318
BbvCI	CCTCAGC	1 cut(s)	301
BbvI	GCAGC	4 cut(s)	134, 292, 355, 395
BccI	CCATC	3 cut(s)	148, 260, 398
BciT130I	CCWGG	1 cut(s)	599
BcoDI	GTCTC	3 cut(s)	168, 341, 607
BfaI	CTAG	1 cut(s)	704
BisI	GCNGC	4 cut(s)	123, 306, 369, 384
BlsI	GCNGC	4 cut(s)	124, 307, 370, 385
Bme1390I	CCNGG	1 cut(s)	599
BmrFI	CCNGG	1 cut(s)	599
BmsI	GCATC	2 cut(s)	407, 539
BpiI	GAAGAC	1 cut(s)	318
Bpu10I	CCTNAGC	1 cut(s)	301
BpuEI	CTTGAG	1 cut(s)	503
BsaBI	GATNNNNATC	1 cut(s)	330
BsaI	GGTCTC	1 cut(s)	607
BsaJI	CCNNGG	1 cut(s)	452
Bse1I	ACTGG	1 cut(s)	88
Bse8I	GATNNNNATC	1 cut(s)	330
BseBI	CCWGG	1 cut(s)	599
BseDI	CCNNGG	1 cut(s)	452
BseGI	GGATG	5 cut(s)	58, 109, 448, 463, 530
BseJI	GATNNNNATC	1 cut(s)	330
BseMII	CTCAG	1 cut(s)	315
BseNI	ACTGG	1 cut(s)	88
BseRI	GAGGAG	1 cut(s)	500
BseXI	GCAGC	4 cut(s)	134, 292, 355, 395
BsgI	GTGCAG	2 cut(s)	171, 402
BshFI	GGCC	2 cut(s)	39, 299
BsmAI	GTCTC	3 cut(s)	168, 341, 607
BsmI	GAATGC	1 cut(s)	680
BsnI	GGCC	2 cut(s)	39, 299
Bso31I	GGTCTC	1 cut(s)	607
Bsp143I	GATC	3 cut(s)	106, 242, 331
Bsp19I	CCATGG	1 cut(s)	452
BspACI	CCGC	1 cut(s)	70
BspANI	GGCC	2 cut(s)	39, 299
BspCNI	CTCAG	1 cut(s)	314
BspPI	GGATC	2 cut(s)	250, 339
BspQI	GCTCTTC	1 cut(s)	369
BspTNI	GGTCTC	1 cut(s)	607
BsrI	ACTGG	1 cut(s)	88
BssECI	CCNNGG	1 cut(s)	452
BssMI	GATC	3 cut(s)	106, 242, 331
BssT1I	CCWWGG	1 cut(s)	452
Bst2UI	CCWGG	1 cut(s)	599
Bst4CI	ACNGT	1 cut(s)	637
Bst6I	CTCTTC	3 cut(s)	339, 351, 369
BstAPI	GCANNNNNTGC	1 cut(s)	577
BstC8I	GCNNGC	4 cut(s)	66, 70, 381, 518
BstDEI	CTNAG	2 cut(s)	194, 301
BstDSI	CCRYGG	1 cut(s)	452
BstF5I	GGATG	5 cut(s)	58, 109, 448, 463, 530
BstKTI	GATC	3 cut(s)	109, 245, 334
BstMAI	GTCTC	3 cut(s)	168, 341, 607
BstMBI	GATC	3 cut(s)	106, 242, 331
BstMWI	GCNNNNNNNGC	2 cut(s)	305, 577
BstNI	CCWGG	1 cut(s)	599
BstSCI	CCNGG	1 cut(s)	597
BstV1I	GCAGC	4 cut(s)	134, 292, 355, 395
BstV2I	GAAGAC	1 cut(s)	318
BstX2I	RGATCY	2 cut(s)	242, 331
BstYI	RGATCY	2 cut(s)	242, 331
BsuRI	GGCC	2 cut(s)	39, 299
BtgI	CCRYGG	1 cut(s)	452
BtsCI	GGATG	5 cut(s)	58, 109, 448, 463, 530
BtsI	GCAGTG	1 cut(s)	183
BtsIMutI	CAGTG	2 cut(s)	81, 183
Cac8I	GCNNGC	4 cut(s)	66, 70, 381, 518
CaiI	CAGNNNCTG	1 cut(s)	308
CsiI	ACCWGGT	1 cut(s)	597
Csp6I	GTAC	1 cut(s)	172
CviAII	CATG	4 cut(s)	17, 119, 453, 472
CviQI	GTAC	1 cut(s)	172
DdeI	CTNAG	2 cut(s)	194, 301
DpnI	GATC	3 cut(s)	108, 244, 333
DpnII	GATC	3 cut(s)	106, 242, 331
Eam1104I	CTCTTC	3 cut(s)	339, 351, 369
EarI	CTCTTC	3 cut(s)	339, 351, 369
Eco130I	CCWWGG	1 cut(s)	452
Eco147I	AGGCCT	1 cut(s)	299
Eco31I	GGTCTC	1 cut(s)	607
Eco57I	CTGAAG	4 cut(s)	62, 330, 372, 393
EcoRII	CCWGG	1 cut(s)	597
EcoT14I	CCWWGG	1 cut(s)	452
ErhI	CCWWGG	1 cut(s)	452
FaeI	CATG	4 cut(s)	20, 122, 456, 475
FaiI	YATR	8 cut(s)	18, 120, 180, 454, 473, 555, 657, 694
FatI	CATG	4 cut(s)	16, 118, 452, 471
FauI	CCCGC	1 cut(s)	77
FblI	GTMKAC	1 cut(s)	609
Fnu4HI	GCNGC	4 cut(s)	123, 306, 369, 384
FokI	GGATG	5 cut(s)	65, 116, 455, 470, 517
Fsp4HI	GCNGC	4 cut(s)	123, 306, 369, 384
FspBI	CTAG	1 cut(s)	704
GluI	GCNGC	4 cut(s)	123, 306, 369, 384
HaeIII	GGCC	2 cut(s)	39, 299
Hin1II	CATG	4 cut(s)	20, 122, 456, 475
HincII	GTYRAC	1 cut(s)	610
HindII	GTYRAC	1 cut(s)	610
HindIII	AAGCTT	2 cut(s)	93, 479
HinfI	GANTC	1 cut(s)	416
HphI	GGTGA	1 cut(s)	353
Hpy166II	GTNNAC	3 cut(s)	157, 505, 610
Hpy188I	TCNGA	1 cut(s)	148
Hpy188III	TCNNGA	3 cut(s)	213, 420, 661
Hpy8I	GTNNAC	3 cut(s)	157, 505, 610
HpyAV	CCTTC	2 cut(s)	358, 506
HpyCH4III	ACNGT	1 cut(s)	637
HpyCH4IV	ACGT	1 cut(s)	159
HpyCH4V	TGCA	5 cut(s)	122, 188, 383, 520, 571
HpyF10VI	GCNNNNNNNGC	2 cut(s)	305, 577
HpyF3I	CTNAG	2 cut(s)	194, 301
HpySE526I	ACGT	1 cut(s)	159
Hsp92II	CATG	4 cut(s)	20, 122, 456, 475
Kzo9I	GATC	3 cut(s)	106, 242, 331
LguI	GCTCTTC	1 cut(s)	369
LmnI	GCTCC	2 cut(s)	253, 527
Lsp1109I	GCAGC	4 cut(s)	134, 292, 355, 395
LweI	GCATC	2 cut(s)	407, 539
MabI	ACCWGGT	1 cut(s)	597
MaeI	CTAG	1 cut(s)	704
MaeII	ACGT	1 cut(s)	159
MaeIII	GTNAC	3 cut(s)	7, 74, 668
MalI	GATC	3 cut(s)	108, 244, 333
MboI	GATC	3 cut(s)	106, 242, 331
MboII	GAAGA	7 cut(s)	55, 323, 356, 365, 368, 373, 386
MfeI	CAATTG	1 cut(s)	585
MflI	RGATCY	2 cut(s)	242, 331
MluCI	AATT	4 cut(s)	47, 149, 585, 645
MmeI	TCCRAC	1 cut(s)	420
MnlI	CCTC	8 cut(s)	147, 232, 253, 288, 310, 478, 481, 616
MseI	TTAA	1 cut(s)	648
MspA1I	CMGCKG	1 cut(s)	305
MspR9I	CCNGG	1 cut(s)	599
MunI	CAATTG	1 cut(s)	585
Mva1269I	GAATGC	1 cut(s)	680
MvaI	CCWGG	1 cut(s)	599
MwoI	GCNNNNNNNGC	2 cut(s)	305, 577
NcoI	CCATGG	1 cut(s)	452
NdeII	GATC	3 cut(s)	106, 242, 331
NlaIII	CATG	4 cut(s)	20, 122, 456, 475
NmeAIII	GCCGAG	1 cut(s)	8
NmuCI	GTSAC	2 cut(s)	7, 668
PceI	AGGCCT	1 cut(s)	299
PciSI	GCTCTTC	1 cut(s)	369
PctI	GAATGC	1 cut(s)	680
PfeI	GAWTC	1 cut(s)	416
PflFI	GACNNNGTC	1 cut(s)	599
PkrI	GCNGC	4 cut(s)	124, 307, 370, 385
PshBI	ATTAAT	1 cut(s)	648
Psp6I	CCWGG	1 cut(s)	597
PspGI	CCWGG	1 cut(s)	597
PsrI	GAACNNNNNNTAC	2 cut(s)	486, 518
PstNI	CAGNNNCTG	1 cut(s)	308
PsuI	RGATCY	2 cut(s)	242, 331
PsyI	GACNNNGTC	1 cut(s)	599
PvuII	CAGCTG	1 cut(s)	305
RsaI	GTAC	1 cut(s)	173
RsaNI	GTAC	1 cut(s)	172
SalI	GTCGAC	1 cut(s)	608
SapI	GCTCTTC	1 cut(s)	369
SaqAI	TTAA	1 cut(s)	648
SatI	GCNGC	4 cut(s)	123, 306, 369, 384
Sau3AI	GATC	3 cut(s)	106, 242, 331
ScrFI	CCNGG	1 cut(s)	599
SexAI	ACCWGGT	1 cut(s)	597
SfaNI	GCATC	2 cut(s)	407, 539
SmlI	CTYRAG	1 cut(s)	482
SmoI	CTYRAG	1 cut(s)	482
Sse9I	AATT	4 cut(s)	47, 149, 585, 645
SseBI	AGGCCT	1 cut(s)	299
SsiI	CCGC	1 cut(s)	70
SspMI	CTAG	1 cut(s)	704
StuI	AGGCCT	1 cut(s)	299
StyD4I	CCNGG	1 cut(s)	597
StyI	CCWWGG	1 cut(s)	452
TaaI	ACNGT	1 cut(s)	637
TaiI	ACGT	1 cut(s)	162
TaqI	TCGA	1 cut(s)	609
TasI	AATT	4 cut(s)	47, 149, 585, 645
TfiI	GAWTC	1 cut(s)	416
Tru1I	TTAA	1 cut(s)	648
Tru9I	TTAA	1 cut(s)	648
TscAI	CASTG	2 cut(s)	88, 190
TseFI	GTSAC	2 cut(s)	7, 668
TseI	GCWGC	4 cut(s)	122, 305, 368, 383
Tsp45I	GTSAC	2 cut(s)	7, 668
TspDTI	ATGAA	2 cut(s)	477, 488
TspRI	CASTG	2 cut(s)	88, 190
Tth111I	GACNNNGTC	1 cut(s)	599
VspI	ATTAAT	1 cut(s)	648
XapI	RAATTY	1 cut(s)	149
XmiI	GTMKAC	1 cut(s)	609
XspI	CTAG	1 cut(s)	704

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.