Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7D

Orthogroup ID

OG0003320

Physical Location & Seq

Genomic Coordinates Reverse (-)

9641274 .. 9642714

Gene Structure 1441 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7DG113100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 438 bp

ATGACCTCTTTGCACTTTCTTGTGGAGGGTTTTAGTTTGAGGAAACTAGAAGGACTTCAAGGGGATGTTTATAGACTTGAATTTGCAACATTGTTGCTTTTCAGGTATCAGGCTTCAAAGGATGATATCACTGTGCTTGCAGCTCTTGCAAAACCCCCATCCTCGGAATATGTGAATGTGCTGCGATGGTACAAACATATTGAGGCACTTCTGAGGATTTCTGGTGTTTCCGGAGAAGGTTGTGGTGTCACCATCAAGGGAGATGCTCCTGTCATAGCAGCTGAAACAAAGGCCTCAGCTGCTGAAGAAGATGATGATGATGTGGATCTTTTTGGTGAAGAAACCGAAGAGGAGAAGAAGGCTGCTCAAGAACGTGCAGCCTGCATCAAGGCATCTGCAAAAAAAGAGAGCCCTTCAACAAAATATGATTTGAGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0044424 GO:0044444 GO:0044464

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

EF1_GNE

Protein Analysis

145

Amino Acids

15.94

Weight (kDa)

4.93

Isoelectric Point (pI)

50.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0003320)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G30230 AT1G30230 AT2G18110
fragaria_vesca	FvH4_5g08071 FvH4_5g08120 FvH4_7g00650 FvH4_7g00650
malus_domestica	MD02G1316000.v1.1 MD06G1013800.v1.1 MD07G1005900.v1.1
prunus_persica	Prupe.1G190100_v2.0.a1 Prupe.2G008700_v2.0.a1 Prupe.4G287700_v2.0.a1 Prupe.4G287700_v2.0.a1
pyrus_communis	pycom02g26470
rosa_chinensis	RchiOBHm_Chr1g0314841 RchiOBHm_Chr7g0190381 RchiOBHm_Chr7g0190391
rosa_laevigata	RLG00000004537 RLG00000030760
rosa_multiflora	Rmu_co8123596.1_g000001 Rmu_ssc0000038.1_g000001
rosa_roxburghii	Rroxscaffold_3G00264680 Rroxscaffold_4G00331840
rosa_rugosa	Rorug01G0002400 Rorug06G0504400
rosa_samantha	Rh1AG013200 Rh1BG004800 Rh1CG011700 Rh1DG006500 Rh7AG110100 Rh7BG112600 Rh7DG113100
rosa_wichuraiana	Rw1G000580 Rw1G000590 Rw7G009550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	230
AclWI	GGATC	1 cut(s)	333
AcsI	RAATTY	1 cut(s)	80
AcuI	CTGAAG	1 cut(s)	324
AfaI	GTAC	1 cut(s)	191
AfiI	CCNNNNNNNGG	1 cut(s)	163
AgsI	TTSAA	4 cut(s)	59, 80, 117, 417
AluBI	AGCT	3 cut(s)	143, 281, 299
AluI	AGCT	3 cut(s)	143, 281, 299
AlwI	GGATC	1 cut(s)	333
AlwNI	CAGNNNCTG	1 cut(s)	302
Aor13HI	TCCGGA	1 cut(s)	230
AoxI	GGCC	1 cut(s)	291
ApeKI	GCWGC	6 cut(s)	140, 181, 278, 299, 362, 377
ApoI	RAATTY	1 cut(s)	80
Asp700I	GAANNNNTTC	1 cut(s)	54
AsuHPI	GGTGA	2 cut(s)	241, 347
BanII	GRGCYC	1 cut(s)	413
BbvCI	CCTCAGC	1 cut(s)	295
BbvI	GCAGC	6 cut(s)	152, 168, 286, 290, 349, 389
BccI	CCATC	3 cut(s)	166, 180, 260
BfaI	CTAG	1 cut(s)	47
BisI	GCNGC	6 cut(s)	141, 182, 279, 300, 363, 378
BlsI	GCNGC	6 cut(s)	142, 183, 280, 301, 364, 379
BmsI	GCATC	3 cut(s)	253, 393, 401
Bpu10I	CCTNAGC	1 cut(s)	295
BpuEI	CTTGAG	1 cut(s)	351
BsaBI	GATNNNNATC	1 cut(s)	324
BsaJI	CCNNGG	1 cut(s)	162
BsaWI	WCCGGW	1 cut(s)	230
Bsc4I	CCNNNNNNNGG	1 cut(s)	163
Bse8I	GATNNNNATC	1 cut(s)	324
BseAI	TCCGGA	1 cut(s)	230
BseDI	CCNNGG	1 cut(s)	162
BseGI	GGATG	3 cut(s)	70, 127, 158
BseJI	GATNNNNATC	1 cut(s)	324
BseLI	CCNNNNNNNGG	1 cut(s)	163
BseMII	CTCAG	2 cut(s)	203, 309
BseRI	GAGGAG	1 cut(s)	365
BseXI	GCAGC	6 cut(s)	152, 168, 286, 290, 349, 389
BsgI	GTGCAG	1 cut(s)	396
BshFI	GGCC	1 cut(s)	293
BsiSI	CCGG	1 cut(s)	231
BslI	CCNNNNNNNGG	1 cut(s)	163
BsnI	GGCC	1 cut(s)	293
Bsp1286I	GDGCHC	1 cut(s)	413
Bsp13I	TCCGGA	1 cut(s)	230
Bsp143I	GATC	1 cut(s)	325
BspANI	GGCC	1 cut(s)	293
BspCNI	CTCAG	2 cut(s)	204, 308
BspEI	TCCGGA	1 cut(s)	230
BspPI	GGATC	1 cut(s)	333
BssECI	CCNNGG	1 cut(s)	162
BssMI	GATC	1 cut(s)	325
Bst4CI	ACNGT	1 cut(s)	133
Bst6I	CTCTTC	1 cut(s)	342
BstAPI	GCANNNNNTGC	1 cut(s)	146
BstC8I	GCNNGC	2 cut(s)	138, 382
BstDEI	CTNAG	2 cut(s)	212, 295
BstF5I	GGATG	3 cut(s)	70, 127, 158
BstKTI	GATC	1 cut(s)	328
BstMBI	GATC	1 cut(s)	325
BstMWI	GCNNNNNNNGC	2 cut(s)	146, 299
BstV1I	GCAGC	6 cut(s)	152, 168, 286, 290, 349, 389
BstX2I	RGATCY	1 cut(s)	325
BstYI	RGATCY	1 cut(s)	325
BsuRI	GGCC	1 cut(s)	293
BtgZI	GCGATG	1 cut(s)	199
BtsCI	GGATG	3 cut(s)	70, 127, 158
BtsIMutI	CAGTG	1 cut(s)	129
Cac8I	GCNNGC	2 cut(s)	138, 382
CaiI	CAGNNNCTG	1 cut(s)	302
Csp6I	GTAC	1 cut(s)	190
CviJI	RGCY	8 cut(s)	113, 143, 281, 293, 299, 362, 380, 411
CviKI_1	RGCY	8 cut(s)	113, 143, 281, 293, 299, 362, 380, 411
CviQI	GTAC	1 cut(s)	190
DdeI	CTNAG	2 cut(s)	212, 295
DpnI	GATC	1 cut(s)	327
DpnII	GATC	1 cut(s)	325
Eam1104I	CTCTTC	1 cut(s)	342
EarI	CTCTTC	1 cut(s)	342
Eco147I	AGGCCT	1 cut(s)	293
Eco24I	GRGCYC	1 cut(s)	413
Eco32I	GATATC	1 cut(s)	127
Eco57I	CTGAAG	1 cut(s)	324
EcoRV	GATATC	1 cut(s)	127
EcoT38I	GRGCYC	1 cut(s)	413
FaiI	YATR	5 cut(s)	72, 171, 198, 275, 426
Fnu4HI	GCNGC	6 cut(s)	141, 182, 279, 300, 363, 378
FokI	GGATG	3 cut(s)	77, 134, 145
FriOI	GRGCYC	1 cut(s)	413
Fsp4HI	GCNGC	6 cut(s)	141, 182, 279, 300, 363, 378
FspBI	CTAG	1 cut(s)	47
GluI	GCNGC	6 cut(s)	141, 182, 279, 300, 363, 378
HaeIII	GGCC	1 cut(s)	293
HapII	CCGG	1 cut(s)	231
HpaII	CCGG	1 cut(s)	231
HphI	GGTGA	2 cut(s)	241, 347
Hpy188I	TCNGA	2 cut(s)	166, 213
Hpy188III	TCNNGA	2 cut(s)	231, 368
HpyAV	CCTTC	4 cut(s)	44, 230, 352, 423
HpyCH4III	ACNGT	1 cut(s)	133
HpyCH4IV	ACGT	1 cut(s)	373
HpyCH4V	TGCA	7 cut(s)	13, 86, 140, 149, 377, 384, 398
HpyF10VI	GCNNNNNNNGC	2 cut(s)	146, 299
HpyF3I	CTNAG	2 cut(s)	212, 295
HpySE526I	ACGT	1 cut(s)	373
Kpn2I	TCCGGA	1 cut(s)	230
Kzo9I	GATC	1 cut(s)	325
LmnI	GCTCC	1 cut(s)	271
LpnPI	CCDG	6 cut(s)	88, 95, 207, 244, 282, 394
Lsp1109I	GCAGC	6 cut(s)	152, 168, 286, 290, 349, 389
LweI	GCATC	3 cut(s)	253, 393, 401
MaeI	CTAG	1 cut(s)	47
MaeII	ACGT	1 cut(s)	373
MaeIII	GTNAC	1 cut(s)	247
MalI	GATC	1 cut(s)	327
MboI	GATC	1 cut(s)	325
MboII	GAAGA	5 cut(s)	317, 320, 350, 359, 367
MflI	RGATCY	1 cut(s)	325
MhlI	GDGCHC	1 cut(s)	413
MluCI	AATT	1 cut(s)	80
MnlI	CCTC	9 cut(s)	16, 19, 33, 172, 196, 207, 304, 343, 426
MroI	TCCGGA	1 cut(s)	230
MroXI	GAANNNNTTC	1 cut(s)	54
MspA1I	CMGCKG	2 cut(s)	281, 299
MspI	CCGG	1 cut(s)	231
MwoI	GCNNNNNNNGC	2 cut(s)	146, 299
NdeII	GATC	1 cut(s)	325
NmuCI	GTSAC	1 cut(s)	247
PceI	AGGCCT	1 cut(s)	293
PdmI	GAANNNNTTC	1 cut(s)	54
PkrI	GCNGC	6 cut(s)	142, 183, 280, 301, 364, 379
PstNI	CAGNNNCTG	1 cut(s)	302
PsuI	RGATCY	1 cut(s)	325
PvuII	CAGCTG	2 cut(s)	281, 299
RsaI	GTAC	1 cut(s)	191
RsaNI	GTAC	1 cut(s)	190
SatI	GCNGC	6 cut(s)	141, 182, 279, 300, 363, 378
Sau3AI	GATC	1 cut(s)	325
SduI	GDGCHC	1 cut(s)	413
SetI	ASST	8 cut(s)	8, 107, 145, 241, 283, 301, 376, 437
SfaNI	GCATC	3 cut(s)	253, 393, 401
SmlI	CTYRAG	1 cut(s)	366
SmoI	CTYRAG	1 cut(s)	366
Sse9I	AATT	1 cut(s)	80
SseBI	AGGCCT	1 cut(s)	293
SspMI	CTAG	1 cut(s)	47
StuI	AGGCCT	1 cut(s)	293
TaaI	ACNGT	1 cut(s)	133
TaiI	ACGT	1 cut(s)	376
TasI	AATT	1 cut(s)	80
TscAI	CASTG	1 cut(s)	136
TseFI	GTSAC	1 cut(s)	247
TseI	GCWGC	6 cut(s)	140, 181, 278, 299, 362, 377
Tsp45I	GTSAC	1 cut(s)	247
TspRI	CASTG	1 cut(s)	136
XapI	RAATTY	1 cut(s)	80
XmnI	GAANNNNTTC	1 cut(s)	54
XspI	CTAG	1 cut(s)	47

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.